View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6029_high_31 (Length: 243)
Name: NF6029_high_31
Description: NF6029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6029_high_31 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 47282404 - 47282187
Alignment:
| Q |
11 |
taatactgtctgagtcacaactttaaggacaaaa-tggtgattaagtcaaaactgtggcgaggcctgcaaaacattaaggatgaagaattaacatgattg |
109 |
Q |
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| T |
47282404 |
taatactgtctgagtcacaactttaaggacaaaaatggtgattaagtcaaaagtgtggcgaggcctgcaaaacattaaggatgaagaattaacatgattg |
47282305 |
T |
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| Q |
110 |
gacctgtatgagcagaataggatgatcaatgatttgtttcgtgcttggaacatcatatatgagttcttggaaacaagggaatgggggatgaagagcatca |
209 |
Q |
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| T |
47282304 |
gacctgtatgagcagaataggatgatcaatgatttgtttcgtgcttggaacatcatatatgagttcttggaagcaagggaatgggggatgaagagcatca |
47282205 |
T |
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| Q |
210 |
ccaaattcattaagtgtt |
227 |
Q |
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| T |
47282204 |
ccaaattcattaagtgtt |
47282187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 70 - 226
Target Start/End: Complemental strand, 47275604 - 47275447
Alignment:
| Q |
70 |
aggcctgcaaaacattaaggatgaa-gaattaacatgattggacctgtatgagcagaataggatgatcaatgatttgtttcgtgcttggaacatcatata |
168 |
Q |
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| T |
47275604 |
aggcctgcaaaacattaaggttgaaagaattaacataattggacctgtataagcagaatgggatgatcaataatttggtttgtgcctggaacatcgtata |
47275505 |
T |
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| Q |
169 |
tgagttcttggaaacaagggaatgggggatgaagagcatcaccaaattcattaagtgt |
226 |
Q |
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| T |
47275504 |
tgagttcttggaagcaagggaatgggggatgcagtgcatcaccaaattcatcaagtgt |
47275447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 47240954 - 47240882
Alignment:
| Q |
155 |
tggaacatcatatatgagttcttggaaacaagggaatgggggatgaagagcatcaccaaattcattaagtgtt |
227 |
Q |
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| T |
47240954 |
tggaacatcgtataagagttgttggaagcaagggaatggaggatgcagagcatcaccaaattgatcaagtgtt |
47240882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 227
Target Start/End: Original strand, 47296239 - 47296311
Alignment:
| Q |
155 |
tggaacatcatatatgagttcttggaaacaagggaatgggggatgaagagcatcaccaaattcattaagtgtt |
227 |
Q |
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| T |
47296239 |
tggaacatcatataggagttgttggaagcaagggaatggaggatgcagggcatcaccaaattgatcaagtgtt |
47296311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 96 - 227
Target Start/End: Original strand, 47300772 - 47300903
Alignment:
| Q |
96 |
aattaacatgattggacctgtatgagcagaataggatgatcaatgatttgtttcgtgcttggaacatcatatatgagttcttggaaacaagggaatgggg |
195 |
Q |
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| T |
47300772 |
aattaatataattgaacctgtatgagtcgaatgggacggtccataatttgttccgagcctcgaacatcatataggagttgatggaagcaagggaatggag |
47300871 |
T |
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| Q |
196 |
gatgaagagcatcaccaaattcattaagtgtt |
227 |
Q |
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| T |
47300872 |
gatgcagggcatcaccaaattgatcaagtgtt |
47300903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 47255906 - 47255834
Alignment:
| Q |
155 |
tggaacatcatatatgagttcttggaaacaagggaatgggggatgaagagcatcaccaaattcattaagtgtt |
227 |
Q |
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| T |
47255906 |
tggaacatcacatagaatttcttggaagcaaggaaatggaggttgcagagcatcaccaaattgatcaagtgtt |
47255834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 32729668 - 32729547
Alignment:
| Q |
106 |
attggacctgtatgagcagaataggatgatcaatgatttgtttcgtgcttggaacatcatatatgagttcttggaaacaagggaatgggggatgaagagc |
205 |
Q |
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|||||||||||||||| |||| ||| | ||||| || |||| | || ||||||||| |||| ||||| |||||| ||||||||||| ||||| ||||| |
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| T |
32729668 |
attggacctgtatgagtcgaatgggacggtcaataatatgttctgagcctggaacatcgtataagagttgttggaagcaagggaatggaggatgcagagc |
32729569 |
T |
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| Q |
206 |
atcaccaaattcattaagtgtt |
227 |
Q |
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| T |
32729568 |
atcaccaaattgatcaagtgtt |
32729547 |
T |
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