View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6029_high_4 (Length: 494)
Name: NF6029_high_4
Description: NF6029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6029_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 13 - 475
Target Start/End: Original strand, 8944200 - 8944659
Alignment:
| Q |
13 |
cagatgggagtggatcatgaactggagacaacctttgttctcgtgaaagggatcactattagtgcttgagtcagaggctgtcattgcagggatcactatt |
112 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8944200 |
cagatgggagtggagcatgaactggagacaacctttgttctcgtgaaagggatcactattattgcttgagtcagaggctgtcattgcagggatcactatt |
8944299 |
T |
|
| Q |
113 |
agtgcagattttttggacaaattgatttggagacacgactccgtggctaggtacattgtaaagtcagcatatatactttgtcaaagaaaaaggtgcatca |
212 |
Q |
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| T |
8944300 |
agtgcagatttttcggacaaattgatttggagacacgactccgtggctaggtacactgtaaagtcagcatatatactttgtcaaagaaaaaggtgcatca |
8944399 |
T |
|
| Q |
213 |
tgctttgtatataatatttgatcagctcagcagtactaatgagtaaaccatcaaattggcttatgattttgtgaagttcttttaaataggtatgtcaaat |
312 |
Q |
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||||||||||||||| |||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
8944400 |
tgctttgtatataatgtttgatcagctcagcagtg---acgagtaaaccatcaaattggcctatgattttgtgaagttcttttaaataggtatgtcaaat |
8944496 |
T |
|
| Q |
313 |
tatgaatatttcaaatgttacatgacgtcgttttaatgttactcacattcatccttttgtcaaacttagttgcttaacatcgttttactgggacgaaatt |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||| ||| ||||||||| |
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| T |
8944497 |
tatgaatatttcaaatgttacatgacgtcgttttaatgttactcacattcatccttttgtcaaacttagtttcttagcatctttttcctgagacgaaatt |
8944596 |
T |
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| Q |
413 |
gataataagtagtaaaatataaggatgtaaacgaaacgtgataacatgaaagtttgacagaaa |
475 |
Q |
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|||| ||||| || |||||||||||||||| ||||||||| |||| ||||||||||||||| |
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| T |
8944597 |
gatactaagtggttaaatataaggatgtaagcgaaacgtgttaacgataaagtttgacagaaa |
8944659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 85 - 189
Target Start/End: Complemental strand, 43564510 - 43564406
Alignment:
| Q |
85 |
agaggctgtcattgcagggatcactattagtgcagattttttggacaaattgatttggagacacgactccgtggctaggtacattgtaaagtcagcatat |
184 |
Q |
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||||||||| ||||||||||||||| | ||||||||||||| |||||||| | ||| |||||| |||||||||||| |||||| |||||||| |||||| |
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| T |
43564510 |
agaggctgttattgcagggatcactgtgagtgcagatttttcggacaaatgggtttagagacatgactccgtggctgggtacacggtaaagtctgcatat |
43564411 |
T |
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| Q |
185 |
atact |
189 |
Q |
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||||| |
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| T |
43564410 |
atact |
43564406 |
T |
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