View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6029_high_6 (Length: 418)

Name: NF6029_high_6
Description: NF6029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6029_high_6
NF6029_high_6
[»] chr6 (1 HSPs)
chr6 (16-418)||(9488482-9488884)


Alignment Details
Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 16 - 418
Target Start/End: Original strand, 9488482 - 9488884
Alignment:
Q  16 atcgaacagttgtggatgaatcctgcaaatgcgcgaacagaaagggaaagacgaagagaaaaaagagacattaaaatgctgcaggccaaaatataaacag 115  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9488482 atcgaacagttgtggaagaatcctgcaaatgcgcgaacagaaagggaaagacgaagagaaaaaagagacattaaaatgctgcaggccaaaatataaacag 9488581  T
Q  116 ataatcacgagcaccggacaatccaccattgtcatcaaaattgtcatgctcaagtttggatacggaagggaaagaaagatcggtgacaatgaagcaatta 215  Q
    ||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9488582 ataatcacgagcaccggacaacccactatcgtcatcaaaattgtcatgctcaagtttggatacggaagggaaagaaagatcggtgacaatgaagcaatta 9488681  T
Q  216 acatagatggtgaaacctgacgttacttagatgatagcagaaacaaaagaaagcacaaacctggtttgagtcgtataggccaagccaagtgcagaaaaga 315  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9488682 acatcgatggtgaaacctgacgttacttagatgatagcagaaacaaaagaaagcacaaacctggtttgagtcgtataggccaagccaagtgcagaaaaga 9488781  T
Q  316 ttctgaccaccgtgcagatttgggtcacgtgcatgtcccaatatccaccgctactgccatggcgccagagaaaatgtgcagcagagaaatctaaggagac 415  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9488782 ttctgaccaccgtgcagatttgggtcacgtgcatgtccgaatatccaccgctactgccatggcgccagagaaaatgtgtagcagagaaatctaaggagac 9488881  T
Q  416 aaa 418  Q
    |||    
T  9488882 aaa 9488884  T

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