View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6029_low_1 (Length: 721)

Name: NF6029_low_1
Description: NF6029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6029_low_1
NF6029_low_1
[»] chr4 (1 HSPs)
chr4 (20-713)||(26794368-26795056)


Alignment Details
Target: chr4 (Bit Score: 627; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 20 - 713
Target Start/End: Complemental strand, 26795056 - 26794368
Alignment:
Q  20 tatagctgctactgcttctcaccgtcgccttctatttcctccaccgcatccgtttccttctttcaggcccggtatgccatattaattagtttcttaatct 119  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  26795056 tatagctgctactgcttctcatcgtcgccttctatatcctccaccgcatccattaccttctttcaggcccggtatgccatattaattagtttcttaatct 26794957  T
Q  120 ctagctagatcatgaaaattaattgagctaggaccttcttgggagtttgttgctaaatcatcagtagcataagagagacagtactattttgaatcaataa 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||    
T  26794956 ctagctagatcatgaaaattaattgagctaggaccttcttgggagtttgttgctaaatcatcagtagcataagagagacagtg---ttttgaatcaataa 26794860  T
Q  220 tagaccgagagagcttaattattgatttgtttgaaataccaataacttgattatatattatacattaattgctgtctattttttatctttatagtttgtg 319  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26794859 tagaccgagagagcttaattattggtttgtttgaaataccaataacttgattatatattatacattaattgctgtctattttttatctttatagtttgtg 26794760  T
Q  320 tgtagcatgcatgccctacatataggtttggtagttttgtctgctagttttgctttttagactgttatagtgatcatagtgtttcttcttgcttcgagtt 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26794759 tgtagcatgcatgccctacatataggtttggtagttttgtctgctagttttgctttttagactgttatagtgatcatagtgtttcttcttgcttcgagtt 26794660  T
Q  420 ccatttaaattactaatttttctctaagtatcacctacatgagaacttataatttctttcacaaaacttggttggctgttttgagtggagttttgtctct 519  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26794659 ccatttaaattactaatttttctccaagtatcacctacatgagaacttataatttctttcacaaaacttggttggctgttttgagtggagttttgtctct 26794560  T
Q  520 tatcatattttattatattcaaaactcaaatcgaatgttagtaattagtttgtgacatgaagaaaacttgttagtatagtgatcaaactttgaacctcct 619  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  26794559 tatcatattttgttatattcaaaactcaaatcgaatgttagtaattagtttgtgacatgaagaaaacttgttagtatagtgatcaaactttgaa---cct 26794463  T
Q  620 acatgcataggtgtttagttggccggagatatctttggcaatgcgtgtgggaagttgctatcattgtttt-catgcttgcctcctatcctatgct 713  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26794462 acatgcataggtgtttagttggccggagatatctttggcaatgcgtgtgggaagttgctatcattgttttccatgcttgcctcctatcctatgct 26794368  T

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