View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6029_low_10 (Length: 344)
Name: NF6029_low_10
Description: NF6029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6029_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 35 - 337
Target Start/End: Complemental strand, 42233876 - 42233574
Alignment:
| Q |
35 |
agtaagtttgttattcgtcttagttagttgatttacccttgtacctaaagtttagagtgatgctaaatgctactaaggatttgagacactaaaggcaaga |
134 |
Q |
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| T |
42233876 |
agtaagtttgttattcgtcttagttagttgatttacccttgtgcctaaagtttagagtgatgctaaatgctactaaggatttgagacacgaaaggcaaga |
42233777 |
T |
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| Q |
135 |
atacatatgtggaacattctaaagaactcaaaactctaattttgatgtttaatggaaattatgcggtcatgggtggatgtaaaatcaacggaccataatc |
234 |
Q |
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| T |
42233776 |
atacatatgtggaacattctaaagaactcaaaactctaatcttgatgtttaatggaaattatgcggtcatgggtggatgtaaaatcaacggaccataatc |
42233677 |
T |
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| Q |
235 |
attcttctctttcgttatttattctttccttaataaccgatgttagcctaaagtgtagatctcattggtaactcaattgaatctcatatcacatattcat |
334 |
Q |
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| T |
42233676 |
attcttctctttcgttatttattctttccttaataatcgacgttagcctaaaatgtagatctcattggtaactcaattgaatctcatagcacatattcat |
42233577 |
T |
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| Q |
335 |
ctc |
337 |
Q |
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| T |
42233576 |
ctc |
42233574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 89 - 255
Target Start/End: Original strand, 35767072 - 35767235
Alignment:
| Q |
89 |
gagtgatgctaaatgctactaaggatttgagacactaaaggcaagaatacatatgtggaacattctaaagaactcaaaactctaattttgatgtttaatg |
188 |
Q |
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| T |
35767072 |
gagtgatgctaaatgttacgaaagaattgagacacgaaagacaagaatgcacatgtggaacattctaaaggactcaactctgtaatctccacgtttcacg |
35767171 |
T |
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| Q |
189 |
gaaattatgcggtcatgggtggatgtaaaatcaacggaccataatcattcttctctttcgttattta |
255 |
Q |
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| T |
35767172 |
gaaatcatgcgg---tgggtgaatgtataatcaacgaaccatagtcattcttctcttttgttattta |
35767235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 36784355 - 36784403
Alignment:
| Q |
204 |
tgggtggatgtaaaatcaacggaccataatcattcttctctttcgttat |
252 |
Q |
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| T |
36784355 |
tgggtggatttaaaatcaatggaccgtaatcattcttctctttcgttat |
36784403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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