View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6029_low_11 (Length: 342)

Name: NF6029_low_11
Description: NF6029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6029_low_11
NF6029_low_11
[»] chr3 (8 HSPs)
chr3 (76-342)||(9420153-9420419)
chr3 (54-342)||(9401888-9402180)
chr3 (30-314)||(9432356-9432645)
chr3 (95-192)||(9356943-9357044)
chr3 (202-342)||(9347196-9347333)
chr3 (253-342)||(9357087-9357175)
chr3 (78-142)||(9340077-9340141)
chr3 (30-70)||(9401833-9401874)
[»] chr6 (4 HSPs)
chr6 (87-142)||(9159852-9159907)
chr6 (80-142)||(9170514-9170576)
chr6 (86-141)||(7040933-7040988)
chr6 (80-136)||(7046426-7046482)
[»] chr1 (1 HSPs)
chr1 (79-112)||(231132-231165)
[»] chr2 (1 HSPs)
chr2 (80-108)||(16629600-16629628)


Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 76 - 342
Target Start/End: Original strand, 9420153 - 9420419
Alignment:
Q  76 gataaacatatagtctgcaaaagtaacaataaaataagatgatcacgctcatcaacattgttacatcgtatcatacaaattacctcctcaaaacaaaatg 175  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  9420153 gataaacatatagtctgcaaaagtaaaaataaaataagatgatcacgctcatcaacattgttacatcttatcatacaaattacctcctcaaaataaaatg 9420252  T
Q  176 cattaaatatatttagatttctgaaaatttaaaagtgcagatacttatttacaaagaacataattggtaataaagtaatatttgatgcaacaacatttca 275  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9420253 cattaaatatatttagatttctgaaaagttaaaagtgcagatacttatttacaaagaacataattggtaataaagtaatatttgatgcaacaacatttca 9420352  T
Q  276 atatttctatttgtgataacataaactaagaacacaacagaacaaaatcaaaatcacattagaaatt 342  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9420353 atatttctatttgtaataacataaactaagaacacaacagaacaaaatcaaaatcacattagaaatt 9420419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 54 - 342
Target Start/End: Original strand, 9401888 - 9402180
Alignment:
Q  54 aatatgtaattagggatcaaccgataaacatatagtctgcaaaagtaacaataaaataagatgatcacgctcatcaacattg----ttacatcgtatcat 149  Q
    ||||||||||||||||| | | | |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    ||||||| ||||||    
T  9401888 aatatgtaattagggattagctgctaaacatatagtctgcaaaagtaacaataaaagaagatgatcaagctcatcaacattgattgttacatcttatcat 9401987  T
Q  150 acaaattacctcctcaaaacaaaatgcattaaatatatttagatttctgaaaatttaaaagtgcagatacttatttacaaagaacataattggtaataaa 249  Q
    |||||| ||| ||||||||||||||| || ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||  |||    
T  9401988 acaaatcaccccctcaaaacaaaatgtatgaaacatatttagatttctgaaaagttaaaagtgcagatacttatttacaaagaacatgattggtacaaaa 9402087  T
Q  250 gtaatatttgatgcaacaacatttcaatatttctatttgtgataacataaactaagaacacaacagaacaaaatcaaaatcacattagaaatt 342  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9402088 gtaatatttgatgcaacaacatttcaatatttctatttgtaataacataaactaagaacacaacagaacaaaatcaaaatcacattagaaatt 9402180  T

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Target: chr3; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 30 - 314
Target Start/End: Original strand, 9432356 - 9432645
Alignment:
Q  30 accagaacgcttatcttctcat-tcaatatgtaattagggatcaaccgataaacatatagtctgcaaaagtaacaataaaataagatgatcacgctcatc 128  Q
    ||||||| |||||||||||||| ||||||||||||||||||| | | | |||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  9432356 accagaaagcttatcttctcatatcaatatgtaattagggattagctgctaaacatatagtctgcaaaagtaacaataaaagaagatgatcaagctcatc 9432455  T
Q  129 aacattg----ttacatcgtatcatacaaattacctcctcaaaacaaaatgcattaaatatatttagatttctgaaaatttaaaagtgcagatacttatt 224  Q
    |||||||    ||||||| |||||||||||| ||| |||||||||||||||||| ||| |||||||||||||| |||||||| |||||||||||||||||    
T  9432456 aacattgattgttacatcttatcatacaaatcaccccctcaaaacaaaatgcatgaaacatatttagatttctaaaaatttagaagtgcagatacttatt 9432555  T
Q  225 tacaaagaacataattggtaataaagtaatatttgatgcaacaacatttcaatatttctatttgtgataacataaactaagaacacaaca 314  Q
    ||||||||||||| ||| ||  |||   | ||||||||||||||||||||||||||||  ||| | ||||||||||||||| ||||||||    
T  9432556 tacaaagaacatatttgctacaaaatccagatttgatgcaacaacatttcaatatttcgctttctaataacataaactaagtacacaaca 9432645  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 95 - 192
Target Start/End: Original strand, 9356943 - 9357044
Alignment:
Q  95 aaagtaacaataaaataagatgatcacgctcatcaac----attgttacatcgtatcatacaaattacctcctcaaaacaaaatgcattaaatatattta 190  Q
    ||||||||||||||| |||||||||| ||||||||||    |||||| |||| ||||||||| |||| | |||||||| ||||||||| ||| |||||||    
T  9356943 aaagtaacaataaaagaagatgatcaagctcatcaacattgattgttgcatcttatcatacagattatcccctcaaaataaaatgcatgaaacatattta 9357042  T
Q  191 ga 192  Q
    ||    
T  9357043 ga 9357044  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 202 - 342
Target Start/End: Original strand, 9347196 - 9347333
Alignment:
Q  202 atttaaaagtgcagatacttatttacaaagaacataattggtaataaagtaatatttgatgcaacaacatttcaatatttctatttgtgataacataaac 301  Q
    ||||| ||||||||||||||||||| |||  |||||  || ||  ||||  ||||| |||||||||||||| |||||||||| ||| | |||||||||||    
T  9347196 atttagaagtgcagatacttatttagaaa--acatatgtgctacaaaagccatattcgatgcaacaacatt-caatatttctctttctaataacataaac 9347292  T
Q  302 taagaacacaacagaacaaaatcaaaatcacattagaaatt 342  Q
     ||| |||||| | | ||| |||| ||||||||||||||||    
T  9347293 caagcacacaagaaagcaatatcacaatcacattagaaatt 9347333  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 342
Target Start/End: Original strand, 9357087 - 9357175
Alignment:
Q  253 atatttgatgcaacaacatttcaatatttctatttgtgataacataaactaagaacacaacagaacaaaatcaaaatcacattagaaatt 342  Q
    ||||| |||||||||||||| |||||||||| ||| | ||||||||||| ||| |||||| | | ||| |||| ||||||||||||||||    
T  9357087 atattcgatgcaacaacatt-caatatttctctttctaataacataaaccaagcacacaagaaagcaatatcacaatcacattagaaatt 9357175  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 9340077 - 9340141
Alignment:
Q  78 taaacatatagtctgcaaaagtaacaataaaataagatgatcacgctcatcaacattgttacatc 142  Q
    |||||||||||||||||||||||||||| ||| ||||| ||||  | || |||||||||||||||    
T  9340077 taaacatatagtctgcaaaagtaacaatgaaagaagataatcaaacccaacaacattgttacatc 9340141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 9401833 - 9401874
Alignment:
Q  30 accagaacgcttatcttctcat-tcaatatgtaattagggat 70  Q
    ||||||| |||||||||||||| |||||||||||||||||||    
T  9401833 accagaaagcttatcttctcatatcaatatgtaattagggat 9401874  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 87 - 142
Target Start/End: Complemental strand, 9159907 - 9159852
Alignment:
Q  87 agtctgcaaaagtaacaataaaataagatgatcacgctcatcaacattgttacatc 142  Q
    ||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||    
T  9159907 agtctgcaaaagtaacaataaaagaagataatcaagctcatcaacattgttacatc 9159852  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 9170514 - 9170576
Alignment:
Q  80 aacatatagtctgcaaaagtaacaataaaataagatgatcacgctcatcaacattgttacatc 142  Q
    ||||| ||||||| |||||||||||||||| ||||| |||| |||||||||||||||||||||    
T  9170514 aacatgtagtctgaaaaagtaacaataaaagaagataatcaagctcatcaacattgttacatc 9170576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 141
Target Start/End: Original strand, 7040933 - 7040988
Alignment:
Q  86 tagtctgcaaaagtaacaataaaataagatgatcacgctcatcaacattgttacat 141  Q
    |||||||||||||||||||||||| ||||| ||||  | |||||||||||| ||||    
T  7040933 tagtctgcaaaagtaacaataaaagaagataatcaatcccatcaacattgtcacat 7040988  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 7046426 - 7046482
Alignment:
Q  80 aacatatagtctgcaaaagtaacaataaaataagatgatcacgctcatcaacattgt 136  Q
    ||||| || ||||||||||||||||||||| ||||| |||| || || |||||||||    
T  7046426 aacatgtaatctgcaaaagtaacaataaaagaagataatcaagcccagcaacattgt 7046482  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 112
Target Start/End: Original strand, 231132 - 231165
Alignment:
Q  79 aaacatatagtctgcaaaagtaacaataaaataa 112  Q
    |||||||||||||||||||| |||||||||||||    
T  231132 aaacatatagtctgcaaaaggaacaataaaataa 231165  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 108
Target Start/End: Original strand, 16629600 - 16629628
Alignment:
Q  80 aacatatagtctgcaaaagtaacaataaa 108  Q
    |||||||||||||||||||||||||||||    
T  16629600 aacatatagtctgcaaaagtaacaataaa 16629628  T

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