View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6029_low_15 (Length: 296)

Name: NF6029_low_15
Description: NF6029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6029_low_15
NF6029_low_15
[»] chr8 (4 HSPs)
chr8 (18-279)||(34570068-34570328)
chr8 (64-164)||(1770914-1771014)
chr8 (66-153)||(1786397-1786484)
chr8 (64-153)||(1781491-1781580)
[»] chr4 (2 HSPs)
chr4 (64-214)||(34688827-34688973)
chr4 (101-145)||(52549829-52549873)
[»] chr2 (3 HSPs)
chr2 (64-206)||(13824483-13824625)
chr2 (71-151)||(5521753-5521833)
chr2 (65-120)||(36267830-36267885)
[»] chr6 (3 HSPs)
chr6 (65-145)||(2420114-2420194)
chr6 (110-214)||(3410686-3410788)
chr6 (111-148)||(20855774-20855811)
[»] chr1 (3 HSPs)
chr1 (65-148)||(34452589-34452672)
chr1 (80-164)||(28196316-28196400)
chr1 (64-153)||(23410728-23410815)
[»] chr7 (1 HSPs)
chr7 (73-214)||(28426697-28426835)
[»] chr5 (1 HSPs)
chr5 (65-145)||(7825800-7825877)


Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 34570328 - 34570068
Alignment:
Q  18 attagatgtaaggacatcataaacatgtataacccctttcacaaatgattaagagtttggtttgttaatttacttttgctttctgaaatttttatgtgta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34570328 attagatgtaaggacatcataaacatgtataacccctttcacaaatga--aagagtttggtttgttaatttacttttgctttctgaaatttttatgtgta 34570231  T
Q  118 ttgataacatgtatttggctttcaaaatatggatggggaatgtctcacctcgtaaccaatttgattgtaccctcgttattttagcatttgaatgaag-nn 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||       
T  34570230 ttgataacatgtatttggctttcaaaatatggatggggaatgtctcacctcgtaaccaatttgattgtaccctcgctattttagcatttgaatgaagttt 34570131  T
Q  217 nnnnnnaccgtnnnnnnnntgtataacccttttcatggctttaaatattccttgtgttttgtg 279  Q
          |||||        ||||||||||||||||||||||||||||||||||||||||||||    
T  34570130 ttttttaccgtaaaaaaaatgtataacccttttcatggctttaaatattccttgtgttttgtg 34570068  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 164
Target Start/End: Complemental strand, 1771014 - 1770914
Alignment:
Q  64 gattaagagtttggtttgttaatttacttttgctttctgaaatttttatgtgtattgataacatgtatttggctttcaaaatatggatggggaatgtctc 163  Q
    |||||||| ||||  |||||||| ||||||||  || |||| |||||||||| ||||||| |||||| ||| |||||||||||||||||  |||||||||    
T  1771014 gattaagattttgacttgttaatgtacttttgacttatgaattttttatgtgcattgatagcatgtaattgtctttcaaaatatggatgaagaatgtctc 1770915  T
Q  164 a 164  Q
    |    
T  1770914 a 1770914  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 66 - 153
Target Start/End: Complemental strand, 1786484 - 1786397
Alignment:
Q  66 ttaagagtttggtttgttaatttacttttgctttctgaaatttttatgtgtattgataacatgtatttggctttcaaaatatggatgg 153  Q
    |||||| |||||||||||||| ||||||||  || | || |||||||| | ||||||| |||||||||| ||||||||||||||||||    
T  1786484 ttaagattttggtttgttaatgtacttttgacttataaattttttatgagcattgatagcatgtatttgtctttcaaaatatggatgg 1786397  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 153
Target Start/End: Complemental strand, 1781580 - 1781491
Alignment:
Q  64 gattaagagtttggtttgttaatttacttttgctttctgaaatttttatgtgtattgataacatgtatttggctttcaaaatatggatgg 153  Q
    |||||||| |||||||||||||| || |||||  || | || ||||||||   ||||||| |||||||||| ||||||||||||||||||    
T  1781580 gattaagattttggtttgttaatgtaattttgacttataaattttttatgaacattgatagcatgtatttgtctttcaaaatatggatgg 1781491  T

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Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 64 - 214
Target Start/End: Original strand, 34688827 - 34688973
Alignment:
Q  64 gattaagagtttggtttgttaatttacttttgctttctgaaatttttatgtgtattgataacatgtatttggctttcaaaatatggatggggaatgtctc 163  Q
    |||||||||||||||||||||||  ||||||| ||||| ||||||    |||||||| || ||||| || |||||||||||| || ||||| ||||||||    
T  34688827 gattaagagtttggtttgttaatgaacttttggtttcttaaattt----gtgtattggtagcatgttttcggctttcaaaatgtgtatgggaaatgtctc 34688922  T
Q  164 acctcgtaaccaatttgattgtaccctcgttattttagcatttgaatgaag 214  Q
    | ||| || ||||||||||||||| |||||||||| |  ||||||||||||    
T  34688923 aactcatagccaatttgattgtactctcgttatttcaatatttgaatgaag 34688973  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 52549829 - 52549873
Alignment:
Q  101 tgaaatttttatgtgtattgataacatgtatttggctttcaaaat 145  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||    
T  52549829 tgaaatttctatgtgtatcgataacatgtatttggctttcaaaat 52549873  T

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Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 64 - 206
Target Start/End: Original strand, 13824483 - 13824625
Alignment:
Q  64 gattaagagtttggtttgttaatttacttttgctttctgaaatttttatgtgtattgataacatgtatttggctttcaaaatatggatgggga-atgtct 162  Q
    ||||||||||||||||||||| || | ||| |||| ||||||||||||| ||||||| || ||||| ||||||||| | ||| | | |||||  |||||     
T  13824483 gattaagagtttggtttgttagttcattttggctt-ctgaaatttttatatgtattggtagcatgtttttggctttaagaatgttgttgggggcatgtcc 13824581  T
Q  163 cacctcgtaaccaatttgattgtaccctcgttattttagcattt 206  Q
    || ||| || ||||||||||||||| ||||||||||||||||||    
T  13824582 caactcatatccaatttgattgtactctcgttattttagcattt 13824625  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 151
Target Start/End: Complemental strand, 5521833 - 5521753
Alignment:
Q  71 agtttggtttgttaatttacttttgctttctgaaatttttatgtgtattgataacatgtatttggctttcaaaatatggat 151  Q
    |||||||||||||||| ||||||||| ||   |||||| | ||| ||||||| |||||||||||| ||| ||||| |||||    
T  5521833 agtttggtttgttaatgtacttttgccttaaaaaatttctctgtatattgatgacatgtatttggtttttaaaatgtggat 5521753  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 36267885 - 36267830
Alignment:
Q  65 attaagagtttggtttgttaatttacttttgctttctgaaatttttatgtgtattg 120  Q
    |||||| ||||| ||||||||| || ||||| |||||||||||| |||||||||||    
T  36267885 attaagggtttgatttgttaatgtatttttggtttctgaaatttctatgtgtattg 36267830  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 145
Target Start/End: Complemental strand, 2420194 - 2420114
Alignment:
Q  65 attaagagtttggtttgttaatttacttttgctttctgaaatttttatgtgtattgataacatgtatttggctttcaaaat 145  Q
    ||||||||||| |||| ||||| ||||||||  ||||||||||| ||||||||| |||||||||||||||| ||| |||||    
T  2420194 attaagagtttagttttttaatatacttttgacttctgaaatttctatgtgtatcgataacatgtatttggttttaaaaat 2420114  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 214
Target Start/End: Complemental strand, 3410788 - 3410686
Alignment:
Q  110 tatgtgtattgataacatgtatttggctttcaaaatatggatggggaatgtctcacctcgtaaccaatttgattgtaccctcgttattttagcatttgaa 209  Q
    |||||||||| |||||||||||||| ||||||||||   |||| |  |||||||| ||| ||  |||||||||||||| ||||| ||||||  |||||||    
T  3410788 tatgtgtattaataacatgtatttgactttcaaaatt--gatgtgacatgtctcaactcatagacaatttgattgtactctcgtcattttaatatttgaa 3410691  T
Q  210 tgaag 214  Q
     ||||    
T  3410690 agaag 3410686  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 20855811 - 20855774
Alignment:
Q  111 atgtgtattgataacatgtatttggctttcaaaatatg 148  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  20855811 atgtgtatttataacatgtatttggctttcaaaatatg 20855774  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 34452672 - 34452589
Alignment:
Q  65 attaagagtttggtttgttaatttacttttgctttctgaaatttttatgtgtattgataacatgtatttggctttcaaaatatg 148  Q
    ||||||||||| |||||||||| ||||||| | |||| |||||||||| |||||||||| ||||||||||  ||||||| ||||    
T  34452672 attaagagtttagtttgttaatgtacttttaccttcttaaatttttatatgtattgatagcatgtatttgattttcaaattatg 34452589  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 80 - 164
Target Start/End: Complemental strand, 28196400 - 28196316
Alignment:
Q  80 tgttaatttacttttgctttctgaaatttttatgtgtattgataacatgtatttggctttcaaaatatggatggggaatgtctca 164  Q
    ||||||| ||||||||  || ||||| |||||| ||||||||||  |||||||| | ||| ||||||||||| ||||||||||||    
T  28196400 tgttaatatacttttgtcttatgaaacttttatatgtattgatataatgtattttgttttaaaaatatggatagggaatgtctca 28196316  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 23410728 - 23410815
Alignment:
Q  64 gattaagagtttggtttgttaatttacttttgctttctgaaatttttatgtgtattgataacatgtatttggctttcaaaatatggatgg 153  Q
    |||||||||||||| ||| |||| ||||||||| |||||||| || ||  | |||||||||||| ||| | ||||| ||| |||||||||    
T  23410728 gattaagagtttgggttgctaatgtacttttgccttctgaaacttcta--tatattgataacatttatatagctttgaaactatggatgg 23410815  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 73 - 214
Target Start/End: Complemental strand, 28426835 - 28426697
Alignment:
Q  73 tttggtttgttaatttacttt-tgctttctgaaatttttatgtgtattgataacatgtatttggctttcaaaatatggatggggaatgtctcacctcgta 171  Q
    ||||||| ||||||||||||| ||||| |||||||    |||| ||||||||| ||||||||| |||| |||||||  | |||  ||||||||  || ||    
T  28426835 tttggttggttaatttactttatgctt-ctgaaatc---atgtctattgataatatgtatttgacttttaaaatatttaagggccatgtctcagttcata 28426740  T
Q  172 accaatttgattgtaccctcgttattttagcatttgaatgaag 214  Q
      |||||||||| ||| || |||||||||||||||||||||||    
T  28426739 gacaatttgattatactctagttattttagcatttgaatgaag 28426697  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 145
Target Start/End: Original strand, 7825800 - 7825877
Alignment:
Q  65 attaagagtttggtttgttaatttac-ttttgctttctgaaatttttatgtgtattgataacatgtatttggctttcaaaat 145  Q
    |||||||||||||||||||||||||| ||||||||| |||||    ||||| ||||||||| ||||||||| ||||||||||    
T  7825800 attaagagtttggtttgttaatttacattttgcttt-tgaaa---ctatgtatattgataatatgtatttgactttcaaaat 7825877  T

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