View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6029_low_16 (Length: 292)

Name: NF6029_low_16
Description: NF6029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6029_low_16
NF6029_low_16
[»] chr4 (24 HSPs)
chr4 (18-279)||(35969244-35969505)
chr4 (48-279)||(36635835-36636069)
chr4 (51-278)||(36627112-36627342)
chr4 (18-279)||(28125736-28126001)
chr4 (18-133)||(29677411-29677526)
chr4 (50-279)||(18360973-18361207)
chr4 (50-279)||(36601722-36601956)
chr4 (51-248)||(55965765-55965965)
chr4 (51-137)||(36612402-36612488)
chr4 (68-144)||(43941954-43942030)
chr4 (51-133)||(36664919-36665001)
chr4 (51-128)||(36616590-36616667)
chr4 (51-133)||(18084012-18084094)
chr4 (51-129)||(36630273-36630351)
chr4 (177-279)||(36630399-36630501)
chr4 (51-116)||(18365178-18365243)
chr4 (51-116)||(36597682-36597747)
chr4 (173-278)||(36642496-36642601)
chr4 (51-116)||(36910512-36910577)
chr4 (51-116)||(36642658-36642723)
chr4 (40-129)||(52187783-52187872)
chr4 (53-145)||(36655955-36656047)
chr4 (174-254)||(36664792-36664872)
chr4 (209-279)||(18365336-18365406)
[»] chr6 (3 HSPs)
chr6 (18-136)||(33839341-33839459)
chr6 (51-278)||(33843103-33843333)
chr6 (175-278)||(33839187-33839290)
[»] chr5 (2 HSPs)
chr5 (51-137)||(19657373-19657459)
chr5 (51-137)||(19674217-19674303)
[»] chr1 (3 HSPs)
chr1 (175-279)||(42601786-42601890)
chr1 (51-115)||(42601950-42602014)
chr1 (51-116)||(28927459-28927524)
[»] chr8 (1 HSPs)
chr8 (51-279)||(35336719-35336947)
[»] chr7 (2 HSPs)
chr7 (51-115)||(30597242-30597306)
chr7 (56-116)||(6849712-6849772)
[»] chr3 (3 HSPs)
chr3 (51-116)||(7119802-7119867)
chr3 (51-116)||(13460643-13460708)
chr3 (56-116)||(7127018-7127078)
[»] chr2 (3 HSPs)
chr2 (57-115)||(43429258-43429316)
chr2 (51-116)||(43863138-43863203)
chr2 (61-117)||(43866610-43866666)


Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 35969244 - 35969505
Alignment:
Q  18 aactgatcttatttcactctcgttcttgactgtttagattctctccttagttcctgatttattagaggttgagctccattctttgtgtaacttgaagtcg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  35969244 aactgatcttatttcactctcgttcttgactgtttagattctctccttagttcctgatatattagaggttgagctccattctttgtgtaacttgaagtcg 35969343  T
Q  118 atggaaataaaattggaacctcttcaaactcaactgggattaccccgcgtagtgaatgccatgttaaagaaagttgctgccaagtcaagtaaagaagcta 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35969344 atggaaataaaattggaacctcttcaaactcaactgggattaccccgcgtagtgaatgccatgttaaagaaagttgctgccaagtcgagtaaagaagcta 35969443  T
Q  218 ccaagttacaaaaagcatttaaagcaggtttggaacctcctcccataccagatggaatagtt 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35969444 ccaagttacaaaaagcatttaaagcaggtttggaacctcctcccataccagatggaatagtt 35969505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 48 - 279
Target Start/End: Complemental strand, 36636069 - 36635835
Alignment:
Q  48 tgtttagattctctccttagttcctgatttattagaggttgagctccattctttgtgtaacttgaagtcgatggaaataaaattggaa-cctcttcaaac 146  Q
    ||||||||||||||| ||||||||||||||| |||||||| |||| | ||||||||||||||||||||| |||||||||||| ||||| ||| |   ||     
T  36636069 tgtttagattctctcattagttcctgatttactagaggttaagctgccttctttgtgtaacttgaagtctatggaaataaaactggaaacctgtagtaa- 36635971  T
Q  147 tcaactgggattaccccgcgtagtgaatg---ccatgttaaagaaagttgctgccaagtcaagtaaagaagctaccaagttacaaaaagcatttaaagca 243  Q
    |||| ||| |||||||  | | ||||| |   ||||||||||||||| ||||||||||||| ||||||||||| ||||||||  ||| || |||||||||    
T  36635970 tcaaatggcattacccaacctggtgaaagaagccatgttaaagaaagctgctgccaagtcacgtaaagaagctgccaagttaagaaaggcttttaaagca 36635871  T
Q  244 ggtttggaacctcctcccataccagatggaatagtt 279  Q
     |||||||||| ||||||||||| ||||||||||||    
T  36635870 cgtttggaaccacctcccatacctgatggaatagtt 36635835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 51 - 278
Target Start/End: Complemental strand, 36627342 - 36627112
Alignment:
Q  51 ttagattctctccttagttcctgatttattagaggttgagctccattctttgtgtaacttgaagtcgatggaaataaaattggaacctcttcaaactcaa 150  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||||  ||||||||||||| ||||||||||||||||||||  |  ||  |||     
T  36627342 ttagattctctccttagttcctgatttattggaggttgagctcccttctttcggtaacttgaagtcaatggaaataaaattggaaccaatcgaagttcag 36627243  T
Q  151 ctgggattaccccgcgtagtga---atgccatgttaaagaaagttgctgccaagtcaagtaaagaagctaccaagttacaaaaagcatttaaagcaggtt 247  Q
    || |||||||||  | || |||   ||||||||||||||| || |  |||||  ||| ||||||||||| | ||| ||| ||||||||||||||||||||    
T  36627242 ctaggattacccttcatattgaaagatgccatgttaaagagagctattgccacatcacgtaaagaagctgcaaaggtacgaaaagcatttaaagcaggtt 36627143  T
Q  248 tggaacctcctcccataccagatggaatagt 278  Q
     | |||| ||| ||||||| |||||||||||    
T  36627142 ggaaaccaccttccatacctgatggaatagt 36627112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 28125736 - 28126001
Alignment:
Q  18 aactgatcttatttcactctcgttcttgactgtttagattctctccttagttcctgatttattagaggttgagctccattctttgtgtaacttgaagtcg 117  Q
    |||||||||||||||||| || | ||| | ||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||| |||||||||||    
T  28125736 aactgatcttatttcactttcatccttcattgtttagattctctccttagttcctgatttactagaggttaagctccgttctttgtgttacttgaagtcg 28125835  T
Q  118 atggaaataaaattggaacctcttcaaactcaactgggattaccccgcgtagtg---aatgccatgttaaagaaagttgctgcc-aagtcaagtaaagaa 213  Q
    |||||||||||||||| ||| | |||| | |||  |  |||||||    ||| |   |||  |||||||||||||| ||||||| |||||| || |||||    
T  28125836 atggaaataaaattggcaccacctcaagcacaagggttattaccctaaatagcgaaaaatcgcatgttaaagaaagctgctgccaaagtcacgtgaagaa 28125935  T
Q  214 gctaccaagttacaaaaagcatttaaagcaggtttggaacctcctcccataccagatggaatagtt 279  Q
    |||  |  |||||||| || |||| |||||||||  ||||| ||||||||||| || |||||||||    
T  28125936 gctgacgggttacaaacagaatttgaagcaggttctgaaccacctcccataccggacggaatagtt 28126001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 29677411 - 29677526
Alignment:
Q  18 aactgatcttatttcactctcgttcttgactgtttagattctctccttagttcctgatttattagaggttgagctccattctttgtgtaacttgaagtcg 117  Q
    ||||||||||||||||||||| || || | |||| ||||||||||||||||||||||||||  ||||||| ||||||| |||||||||||||||||||||    
T  29677411 aactgatcttatttcactctcattattcattgttcagattctctccttagttcctgatttaccagaggttaagctccactctttgtgtaacttgaagtcg 29677510  T
Q  118 atggaaataaaattgg 133  Q
    |||||||| |||||||    
T  29677511 atggaaattaaattgg 29677526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 50 - 279
Target Start/End: Original strand, 18360973 - 18361207
Alignment:
Q  50 tttagattctctccttagttcctgatttattagaggttg---agctccattctttgtgtaacttgaagtcgatggaaataaaattggaacctcttcaaac 146  Q
    ||||||| ||||||||||||||| ||||| ||||||||    ||||   ||||||||||||||||||||| |  ||||||||| ||||||  | |   |     
T  18360973 tttagatactctccttagttccttatttactagaggttattaagctatcttctttgtgtaacttgaagtctacagaaataaaactggaactacctagcat 18361072  T
Q  147 tcaactgggattaccccgcgtagtga---atgccatgttaaagaaagttgctgccaagtcaagtaaagaagctaccaagttacaaaaagcatttaaagca 243  Q
     ||| |||||||||||  | ||||||   |||||||||||||||||||||||||||||||| ||||||||||| | ||||||  ||| |||||| |||||    
T  18361073 ccaa-tgggattacccaacatagtgagcgatgccatgttaaagaaagttgctgccaagtcacgtaaagaagctgctaagttaggaaaggcatttgaagca 18361171  T
Q  244 ggtttggaacctcctcccataccagatggaatagtt 279  Q
     ||||| ||||  |||||||||| ||||||||||||    
T  18361172 agtttgaaaccatctcccatacctgatggaatagtt 18361207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 50 - 279
Target Start/End: Complemental strand, 36601956 - 36601722
Alignment:
Q  50 tttagattctctccttagttcctgatttattagaggttg---agctccattctttgtgtaacttgaagtcgatggaaataaaattggaacctcttcaaac 146  Q
    ||||||| ||||||||||||||| ||||| ||||||||    ||||   ||||||||||||||||||||| |  ||||||||| ||||||  | |   |     
T  36601956 tttagatactctccttagttccttatttactagaggttattaagctatcttctttgtgtaacttgaagtctacagaaataaaactggaactacctagcat 36601857  T
Q  147 tcaactgggattaccccgcgtagtga---atgccatgttaaagaaagttgctgccaagtcaagtaaagaagctaccaagttacaaaaagcatttaaagca 243  Q
     ||| |||||||||||  | ||||||   |||||||||||||||||||||||||||||||| ||||||||||| | ||||||  ||| |||||| |||||    
T  36601856 ccaa-tgggattacccaacatagtgagcgatgccatgttaaagaaagttgctgccaagtcacgtaaagaagctgctaagttaggaaaggcatttgaagca 36601758  T
Q  244 ggtttggaacctcctcccataccagatggaatagtt 279  Q
     ||||| ||||  |||||||||| ||||||||||||    
T  36601757 agtttgaaaccatctcccatacctgatggaatagtt 36601722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 51 - 248
Target Start/End: Complemental strand, 55965965 - 55965765
Alignment:
Q  51 ttagattctctccttagttcctgatttattagaggttgagctccattctttgtgtaacttgaagtcgatggaaataaaattggaacctcttcaaactcaa 150  Q
    |||||||||||||||||||||  ||||||| ||| |  | |||| ||||||||||||||||||||||| ||||||| |||||||||| | | ||  | |     
T  55965965 ttagattctctccttagttcccaatttattggagctcaaactcccttctttgtgtaacttgaagtcgacggaaatagaattggaaccacctaaagatgat 55965866  T
Q  151 ctgggattaccccgcgtagtga---atgccatgttaaagaaagttgctgccaagtcaagtaaagaagctaccaagttacaaaaagcatttaaagcaggtt 247  Q
     ||| |||||||| | || |||   | |||||||||||||||| ||||||| ||||  |  ||||||||||||||||||||||||||||| |||| ||||    
T  55965865 atggaattaccccacttaatgaaagaagccatgttaaagaaagatgctgccgagtcttgcgaagaagctaccaagttacaaaaagcatttgaagcgggtt 55965766  T
Q  248 t 248  Q
    |    
T  55965765 t 55965765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 51 - 137
Target Start/End: Complemental strand, 36612488 - 36612402
Alignment:
Q  51 ttagattctctccttagttcctgatttattagaggttgagctccattctttgtgtaacttgaagtcgatggaaataaaattggaacc 137  Q
    |||||||||||||||| |||||||||||||||||||| |||||| ||||||||| ||||| ||||| || |||||||||||||||||    
T  36612488 ttagattctctccttaattcctgatttattagaggttaagctcccttctttgtgcaacttaaagtctatagaaataaaattggaacc 36612402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 68 - 144
Target Start/End: Original strand, 43941954 - 43942030
Alignment:
Q  68 ttcctgatttattagaggttgagctccattctttgtgtaacttgaagtcgatggaaataaaattggaacctcttcaa 144  Q
    |||||| ||||||||| ||| |||||| ||||||||||||||| ||||| |||||||||||||||||||| ||||||    
T  43941954 ttcctggtttattagaagttaagctcccttctttgtgtaacttaaagtctatggaaataaaattggaaccacttcaa 43942030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 51 - 133
Target Start/End: Complemental strand, 36665001 - 36664919
Alignment:
Q  51 ttagattctctccttagttcctgatttattagaggttgagctccattctttgtgtaacttgaagtcgatggaaataaaattgg 133  Q
    |||||||||||||||||||||||||||||| |||||| |||||| ||| || ||||||||||||||  ||||| || ||||||    
T  36665001 ttagattctctccttagttcctgatttattggaggttaagctcccttcgttatgtaacttgaagtcattggaagtagaattgg 36664919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 36616667 - 36616590
Alignment:
Q  51 ttagattctctccttagttcctgatttattagaggttgagctccattctttgtgtaacttgaagtcgatggaaataaa 128  Q
    ||||||||| ||||||||||||||| |||| |||||| |||||| |||||| ||||||||||||| | ||||||||||    
T  36616667 ttagattctgtccttagttcctgatctattggaggttaagctcccttctttatgtaacttgaagttggtggaaataaa 36616590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 18084012 - 18084094
Alignment:
Q  51 ttagattctctccttagttcctgatttattagaggttgagctccattctttgtgtaacttgaagtcgatggaaataaaattgg 133  Q
    ||||||||| |||||||||||||||||||| |||||| |||||| ||| || ||||||||||||||  ||||| || ||||||    
T  18084012 ttagattctgtccttagttcctgatttattggaggttaagctcccttcgttatgtaacttgaagtcattggaagtagaattgg 18084094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 129
Target Start/End: Original strand, 36630273 - 36630351
Alignment:
Q  51 ttagattctctccttagttcctgatttattagaggttgagctccattctttgtgtaacttgaagtcgatggaaataaaa 129  Q
    ||||||||||||||| |||||||||||||| |||||| |||||| |||||| |||||||||| |||  ||||| |||||    
T  36630273 ttagattctctccttggttcctgatttattggaggttaagctcccttctttttgtaacttgaggtcattggaagtaaaa 36630351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 279
Target Start/End: Original strand, 36630399 - 36630501
Alignment:
Q  177 catgttaaagaaagttgctgccaagtcaagtaaagaagctaccaagttacaaaaagcatttaaagcaggtttggaacctcctcccataccagatggaata 276  Q
    ||||||||||||||||||||| |||||||||||||||||    ||||||  ||| || |||||||||||||| |||   ||| ||||||| |||||||||    
T  36630399 catgttaaagaaagttgctgctaagtcaagtaaagaagccgataagttaagaaaggcgtttaaagcaggtttagaattacctgccatacctgatggaata 36630498  T
Q  277 gtt 279  Q
    |||    
T  36630499 gtt 36630501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 18365178 - 18365243
Alignment:
Q  51 ttagattctctccttagttcctgatttattagaggttgagctccattctttgtgtaacttgaagtc 116  Q
    ||||||||||||||| |||||||||||||| |||||| || ||  |||||||||||||||||||||    
T  18365178 ttagattctctcctttgttcctgatttattggaggttaagttcacttctttgtgtaacttgaagtc 18365243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 36597747 - 36597682
Alignment:
Q  51 ttagattctctccttagttcctgatttattagaggttgagctccattctttgtgtaacttgaagtc 116  Q
    ||||||||||||||| |||||||||||||| |||||| || ||  |||||||||||||||||||||    
T  36597747 ttagattctctcctttgttcctgatttattggaggttaagttcacttctttgtgtaacttgaagtc 36597682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 173 - 278
Target Start/End: Complemental strand, 36642601 - 36642496
Alignment:
Q  173 atgccatgttaaagaaagttgctgccaagtcaagtaaagaagctaccaagttacaaaaagcatttaaagcaggtttggaacctcctcccataccagatgg 272  Q
    ||||| |||||||||||| |||||||| |||||||||||||| | | ||||||  |||  ||||||||||  |||||||||| ||| |||||||  ||||    
T  36642601 atgccttgttaaagaaagatgctgccatgtcaagtaaagaagttgctaagttaagaaagacatttaaagctcgtttggaaccacctgccatacctaatgg 36642502  T
Q  273 aatagt 278  Q
    ||||||    
T  36642501 aatagt 36642496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 36910512 - 36910577
Alignment:
Q  51 ttagattctctccttagttcctgatttattagaggttgagctccattctttgtgtaacttgaagtc 116  Q
    ||||||||| |||||||||||||||||||| |||||| |  |||||||||| ||||||||||||||    
T  36910512 ttagattctgtccttagttcctgatttattggaggttaaattccattctttatgtaacttgaagtc 36910577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 36642723 - 36642658
Alignment:
Q  51 ttagattctctccttagttcctgatttattagaggttgagctccattctttgtgtaacttgaagtc 116  Q
    ||||||||||||| |||||||||||||||   ||||| |||| |||||||| ||||||||||||||    
T  36642723 ttagattctctccatagttcctgatttatcgaaggttaagctacattctttatgtaacttgaagtc 36642658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 52187783 - 52187872
Alignment:
Q  40 ttcttgactgtttagattctctccttagttcctgatttattagaggttgagctccattctttgtgtaacttgaagtcgatggaaataaaa 129  Q
    ||||||| || |||| |||| || |||||||||||||||||  |||||||| ||||||| ||||||| |||||||||  || ||||||||    
T  52187783 ttcttgattgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttgaagtcactgaaaataaaa 52187872  T

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Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 145
Target Start/End: Complemental strand, 36656047 - 36655955
Alignment:
Q  53 agattctctccttagttcctgatttattagaggttgagctccattctttgtgtaacttgaagtcgatggaaataaaattggaacctcttcaaa 145  Q
    |||||||||||||||||||| |||||||  || || || | | |||||||||||||||||||||  |||||||| || ||||| | |||||||    
T  36656047 agattctctccttagttcctaatttattgaagtttaagataccttctttgtgtaacttgaagtcactggaaatagaactggaatcacttcaaa 36655955  T

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Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 254
Target Start/End: Complemental strand, 36664872 - 36664792
Alignment:
Q  174 tgccatgttaaagaaagttgctgccaagtcaagtaaagaagctaccaagttacaaaaagcatttaaagcaggtttggaacc 254  Q
    ||||||||||||||||| ||||||||||||  ||||||||| | | ||||||  ||| ||||| |||||| ||||||||||    
T  36664872 tgccatgttaaagaaagctgctgccaagtctcgtaaagaagttgctaagttaagaaaggcattcaaagcacgtttggaacc 36664792  T

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Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 279
Target Start/End: Original strand, 18365336 - 18365406
Alignment:
Q  209 aagaagctaccaagttacaaaaagcatttaaagcaggtttggaacctcctcccataccagatggaatagtt 279  Q
    |||||||| | |||||| | || |||||||| || |||||| |||| ||||||||||| ||||||||||||    
T  18365336 aagaagctgctaagttaaacaaggcatttaatgctggtttgcaaccacctcccatacctgatggaatagtt 18365406  T

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Target: chr6 (Bit Score: 67; Significance: 8e-30; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 33839459 - 33839341
Alignment:
Q  18 aactgatcttatttcactctcgttcttgactgtttagattctctccttagttcctgatttattagaggttgagctccattctttgtgtaacttgaagtcg 117  Q
    |||||||| || ||||| ||| ||| | | || |||||||||||||||||||||||||||||| |||||| |||| | ||||||||||||||||||||||    
T  33839459 aactgatcctaattcaccctcattccttaatgcttagattctctccttagttcctgatttattggaggttaagcttccttctttgtgtaacttgaagtcg 33839360  T
Q  118 atggaaataaaattggaac 136  Q
     ||||||||||||||||||    
T  33839359 gtggaaataaaattggaac 33839341  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 51 - 278
Target Start/End: Complemental strand, 33843333 - 33843103
Alignment:
Q  51 ttagattctctccttagttcctgatttattagaggttgagctccattctttgtgtaacttgaagtcgatggaaataaaattggaacctcttcaaactcaa 150  Q
    |||||||||||||||||||||  ||||||| |||||| |||| | ||||||| ||||||||||||||||||||||||||||||| || ||| ||  |||     
T  33843333 ttagattctctccttagttcccaatttattggaggttaagcttccttctttgagtaacttgaagtcgatggaaataaaattggagccacttgaagatcac 33843234  T
Q  151 ctgggattaccccgcgtagtga---atgccatgttaaagaaagttgctgccaagtcaagtaaagaagctaccaagttacaaaaagcatttaaagcaggtt 247  Q
         ||||     | ||||||   | |||||||||||||||| ||||||||||||| | ||||||||| ||||| ||| ||||||||||||||| ||||    
T  33843233 acaaaattattgtacttagtgaaagaagccatgttaaagaaagctgctgccaagtcacgcaaagaagcttccaagctacgaaaagcatttaaagcgggtt 33843134  T
Q  248 tggaacctcctcccataccagatggaatagt 278  Q
    ||  ||| ||| || |||| |||||||||||    
T  33843133 tgcgaccaccttccgtacctgatggaatagt 33843103  T

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Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 175 - 278
Target Start/End: Complemental strand, 33839290 - 33839187
Alignment:
Q  175 gccatgttaaagaaagttgctgccaagtcaagtaaagaagctaccaagttacaaaaagcatttaaagcaggtttggaacctcctcccataccagatggaa 274  Q
    |||||||||||||||| |||||| |||||| | ||||||||| ||||||||| ||||||||||||||| ||||| ||||| ||| ||||||| |||||||    
T  33839290 gccatgttaaagaaagctgctgcaaagtcacgcaaagaagcttccaagttacgaaaagcatttaaagcgggtttagaaccaccttccatacctgatggaa 33839191  T
Q  275 tagt 278  Q
    ||||    
T  33839190 tagt 33839187  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 51 - 137
Target Start/End: Complemental strand, 19657459 - 19657373
Alignment:
Q  51 ttagattctctccttagttcctgatttattagaggttgagctccattctttgtgtaacttgaagtcgatggaaataaaattggaacc 137  Q
    |||||||||||||||||||||||| ||||||||| || |||||| ||||||||| ||||| ||||| |||||||||||| |||||||    
T  19657459 ttagattctctccttagttcctgaattattagagcttaagctcccttctttgtgcaacttaaagtctatggaaataaaactggaacc 19657373  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 51 - 137
Target Start/End: Complemental strand, 19674303 - 19674217
Alignment:
Q  51 ttagattctctccttagttcctgatttattagaggttgagctccattctttgtgtaacttgaagtcgatggaaataaaattggaacc 137  Q
    |||||||||||||||||||||||| ||||||||| || |||||| ||||||||| ||||| ||||| |||||||||||| |||||||    
T  19674303 ttagattctctccttagttcctgaattattagagcttaagctcccttctttgtgcaacttaaagtctatggaaataaaactggaacc 19674217  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 279
Target Start/End: Complemental strand, 42601890 - 42601786
Alignment:
Q  175 gccatgttaaagaaagttgctgccaagtcaagtaaagaagctaccaagttacaaaaagcatttaaagcaggtttggaacctcctcccataccagatggaa 274  Q
    |||||||||||||||| ||||||||||||| ||||||||||| | ||||||  ||| | ||||||||| |||||  |||| ||||||||||| |||||||    
T  42601890 gccatgttaaagaaagctgctgccaagtcacgtaaagaagctgctaagttaagaaaggaatttaaagcgggtttaaaaccacctcccatacccgatggaa 42601791  T
Q  275 tagtt 279  Q
    |||||    
T  42601790 tagtt 42601786  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 42602014 - 42601950
Alignment:
Q  51 ttagattctctccttagttcctgatttattagaggttgagctccattctttgtgtaacttgaagt 115  Q
    |||||||||||||||||||||||||||||| |||||| |||||  ||| ||||||||||||||||    
T  42602014 ttagattctctccttagttcctgatttattggaggttaagctcacttcgttgtgtaacttgaagt 42601950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 28927524 - 28927459
Alignment:
Q  51 ttagattctctccttagttcctgatttattagaggttgagctccattctttgtgtaacttgaagtc 116  Q
    |||| ||||| ||||| |||||||||||||  |||||||| ||||||| |||||||| ||||||||    
T  28927524 ttaggttctcaccttaattcctgatttattcaaggttgagttccattccttgtgtaaattgaagtc 28927459  T

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Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 51 - 279
Target Start/End: Original strand, 35336719 - 35336947
Alignment:
Q  51 ttagattctctccttagttcctgatttattagaggttgagctccattctttgtgtaacttgaagtcgatggaaataaaattggaacctcttcaaactcaa 150  Q
    |||| ||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||  |||||||| || ||   ||  || |   || |    
T  35336719 ttaggttctctccttagttcctgatttattggaggttaagctcccttctttgtgtaacttgaagtcattggaaatagaaatgatgccatttgattatcga 35336818  T
Q  151 ctgggattaccccgcgtagtg---aatgccatgttaaagaaagttgctgccaagtcaagtaaagaagctaccaagttacaaaaagcatttaaagcaggtt 247  Q
    |    ||||| |||  || ||   |||||||||||||||||||  |||||||||||  |||| |||||| | ||||||  |||  |||||||||||||||    
T  35336819 cc---attactccgtataatggaaaatgccatgttaaagaaagcggctgccaagtcctgtaatgaagctgcaaagttaagaaagacatttaaagcaggtt 35336915  T
Q  248 tggaacctcctcccataccagatggaatagtt 279  Q
    ||  ||| ||||||||||| ||||||||||||    
T  35336916 tgagaccacctcccatacctgatggaatagtt 35336947  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 30597306 - 30597242
Alignment:
Q  51 ttagattctctccttagttcctgatttattagaggttgagctccattctttgtgtaacttgaagt 115  Q
    |||| ||||||| |||||||||||||||||  |||||||| ||||||| ||||||||||||||||    
T  30597306 ttaggttctctcgttagttcctgatttattgaaggttgagttccattccttgtgtaacttgaagt 30597242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 6849712 - 6849772
Alignment:
Q  56 ttctctccttagttcctgatttattagaggttgagctccattctttgtgtaacttgaagtc 116  Q
    |||||||||||||||||||||||||  |||||||  ||||||| |||||  ||||||||||    
T  6849712 ttctctccttagttcctgatttattgaaggttgaattccattccttgtgggacttgaagtc 6849772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 7119802 - 7119867
Alignment:
Q  51 ttagattctctccttagttcctgatttattagaggttgagctccattctttgtgtaacttgaagtc 116  Q
    |||| |||||||||||||||||||||||||  ||||| |||| | ||| |||||||||||||||||    
T  7119802 ttaggttctctccttagttcctgatttattgaaggttaagctaccttccttgtgtaacttgaagtc 7119867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 13460643 - 13460708
Alignment:
Q  51 ttagattctctccttagttcctgatttattagaggttgagctccattctttgtgtaacttgaagtc 116  Q
    |||| ||||||||||||||||| |||||||   |||| |||||  ||||||| |||||||||||||    
T  13460643 ttaggttctctccttagttcctaatttattgagggttaagctctcttctttgcgtaacttgaagtc 13460708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 7127018 - 7127078
Alignment:
Q  56 ttctctccttagttcctgatttattagaggttgagctccattctttgtgtaacttgaagtc 116  Q
    |||||||||||||||||| ||| ||  ||||| | |||||||| ||| |||||||||||||    
T  7127018 ttctctccttagttcctggtttgttgaaggttaaactccattccttgcgtaacttgaagtc 7127078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 43429316 - 43429258
Alignment:
Q  57 tctctccttagttcctgatttattagaggttgagctccattctttgtgtaacttgaagt 115  Q
    |||||||||| ||||||||||||  |||||| || ||  ||||||||||||||||||||    
T  43429316 tctctccttaattcctgatttatcggaggttaagttctcttctttgtgtaacttgaagt 43429258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 43863203 - 43863138
Alignment:
Q  51 ttagattctctccttagttcctgatttattagaggttgagctccattctttgtgtaacttgaagtc 116  Q
    |||| |||| |||||||||| || ||||||  |||| ||||||| ||| |||||||||||||||||    
T  43863203 ttaggttctttccttagttcgtggtttattgaaggtagagctcccttccttgtgtaacttgaagtc 43863138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 43866666 - 43866610
Alignment:
Q  61 tccttagttcctgatttattagaggttgagctccattctttgtgtaacttgaagtcg 117  Q
    |||||||||| |||||||||  |||||||| ||| ||| |||| |||||||||||||    
T  43866666 tccttagttcgtgatttattgaaggttgagttcccttccttgtttaacttgaagtcg 43866610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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