View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6029_low_18 (Length: 276)
Name: NF6029_low_18
Description: NF6029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6029_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 6 - 259
Target Start/End: Original strand, 5554291 - 5554544
Alignment:
| Q |
6 |
atgtgaaaaacagtgaagaaattgagattgtctagttagagaaacttactcaatgcttgtgtctttcggcgcctatcaggtgtaaggaaattggtggaag |
105 |
Q |
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| T |
5554291 |
atgtgaaaaacagtgaagaaattgagattgtctagttagagaaacttactcaatgcttgtgtctttcggcgcctatcaggtgtaaggaaattggtggaag |
5554390 |
T |
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| Q |
106 |
gaacaacctttgcagggccacaagtgtaaccaggtccaggagccaaaagagtgaaattcttcggaagtttaaccgttcggtttgaggtacctgcttgtcc |
205 |
Q |
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| T |
5554391 |
gaacaacctttgcagggccacaagtgtaaccaggtccaggagccaaaagagtgaaattcttcggaagtttaaccgttcggtttgaggtacctgcttgtcc |
5554490 |
T |
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| Q |
206 |
aacactaacttgaaaagctgatatagcttctgcaggatcttgtccccatgctgc |
259 |
Q |
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| T |
5554491 |
aacactaacttgaaaagctgatatagcttctgcaggatcttgtccccatgctgc |
5554544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 48 - 260
Target Start/End: Original strand, 5012181 - 5012393
Alignment:
| Q |
48 |
aacttactcaatgcttgtgtctttcggcgcctatcaggtgtaaggaaattggtggaaggaacaacctttgcagggccacaagtgtaaccaggtccaggag |
147 |
Q |
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| T |
5012181 |
aacttactaagtgcttgagtcttgcgacgcttatccgtggtgaggaaagtggtggaaggaacaatcttagcaggaccacaagtatagccaggtccaggag |
5012280 |
T |
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| Q |
148 |
ccaaaagagtgaaattcttcggaagtttaaccgttcggtttgaggtacctgcttgtccaacactaacttgaaaagctgatatagcttctgcaggatcttg |
247 |
Q |
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| T |
5012281 |
ccaagagagtgaagttcttagggagtttcacagtcttgtttgaagtaccagcttgtccaacactaacttggaaagctgaaactgctgatgaagggtcttg |
5012380 |
T |
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| Q |
248 |
tccccatgctgct |
260 |
Q |
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| T |
5012381 |
tccccatgctgct |
5012393 |
T |
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