View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6029_low_25 (Length: 253)
Name: NF6029_low_25
Description: NF6029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6029_low_25 |
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| [»] scaffold0440 (1 HSPs) |
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| [»] scaffold0076 (1 HSPs) |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: scaffold0440 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: scaffold0440
Description:
Target: scaffold0440; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 253
Target Start/End: Original strand, 826 - 1068
Alignment:
| Q |
11 |
cacagaaccaaaattaattatgaaatcaatttttgctccattaaatattctcaaagcaccaaaacatattactaatgaactgtttaatcaatcaaatgga |
110 |
Q |
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| T |
826 |
cacagaacaaaaattaattatgaaatcaatttttgctccattaaatattctcaaagcaccaaaacatattactaatgaactgtttaatcaatcaaatgga |
925 |
T |
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| Q |
111 |
cttcacaatgtgaattattggatttgattggttcctaacagttacagttacttgacttggatgacttgtatgcaagggcattttataggtaaatcttcct |
210 |
Q |
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| T |
926 |
cttcacaatgtgaattattggatttgattggttcctaacagttacagttacttgacttggatgacttgtatgcaagggcattttataggtaaatcttcct |
1025 |
T |
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| Q |
211 |
catggttgttgaggcaccatcgatgtgggactgttcaaaacca |
253 |
Q |
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| T |
1026 |
catggttgttgaggcaccatcgatgtgggactgttcaaaacca |
1068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 21249561 - 21249511
Alignment:
| Q |
83 |
taatgaactgtttaatcaatcaaatggacttcacaatgtgaattattggat |
133 |
Q |
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| T |
21249561 |
taatgaaccgtttaatcaattaagtggactgcacaatgtgaattattggat |
21249511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 245
Target Start/End: Original strand, 21136547 - 21136601
Alignment:
| Q |
191 |
ttttataggtaaatcttcctcatggttgttgaggcaccatcgatgtgggactgtt |
245 |
Q |
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| T |
21136547 |
ttttataagtaaatcctcctcttggttgtttaagcaccaccgatgtgggactgtt |
21136601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 21150056 - 21150109
Alignment:
| Q |
192 |
tttataggtaaatcttcctcatggttgttgaggcaccatcgatgtgggactgtt |
245 |
Q |
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| T |
21150056 |
tttataggtaaattttcctctttgttgttaaagcatcatcgatgtgggactgtt |
21150109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 21184041 - 21184102
Alignment:
| Q |
66 |
gcaccaaaacatattactaatgaactgtttaatcaatcaaatggacttcacaatgtgaatta |
127 |
Q |
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| T |
21184041 |
gcaccaaaaaatattattaatgaaccatttaaccaataaattggacatcacaatgtgaatta |
21184102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 21221016 - 21221080
Alignment:
| Q |
66 |
gcaccaaaacatattactaatgaactgtttaatcaatcaaatggacttcacaatgtgaattattg |
130 |
Q |
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| T |
21221016 |
gcaccaaaaattattactaatgaattgtttaatcgatgaagtgaacagcacaatgtgaattattg |
21221080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 249
Target Start/End: Original strand, 12602 - 12660
Alignment:
| Q |
191 |
ttttataggtaaatcttcctcatggttgttgaggcaccatcgatgtgggactgttcaaa |
249 |
Q |
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| T |
12602 |
ttttataagtaaatcttcctcttgattgtttaagcaccatccatgtgggactattcaaa |
12660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 5449 - 5401
Alignment:
| Q |
191 |
ttttataggtaaatcttcctcatggttgttgaggcaccatcgatgtggg |
239 |
Q |
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| T |
5449 |
ttttataagtaaaccttcctcttggttgttcatgcaccatcgatgtggg |
5401 |
T |
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