View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6029_low_27 (Length: 247)
Name: NF6029_low_27
Description: NF6029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6029_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 225
Target Start/End: Complemental strand, 12096428 - 12096212
Alignment:
| Q |
9 |
caagaaaatcccaaaaacaaccatccatcgtgtcaacttccttgagatagatggcgctgatgatcttgtcggtacaattccgcccctcatcgctgatcta |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||| |
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| T |
12096428 |
caagaaaatcccaaaaacaaccatccatcgtgtcaacttccttgagatagatggcgctgatgatcttgtcggtacaatcccgccactcatcgccgatcta |
12096329 |
T |
|
| Q |
109 |
ccttacctcgagaccctcattttccgcctcctccctaaccttacaggtcctattcctcaagccattgcaagactgcctcaccttaaattcgtcctcctta |
208 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12096328 |
ccttacctcgagaccctcatttttcgcctcctccctaacctaacaggtcctattcctcaagccattgcaagactgcctcaccttaaatttgtcctcctta |
12096229 |
T |
|
| Q |
209 |
attggaacaacctaact |
225 |
Q |
| |
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||||||||||||||||| |
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| T |
12096228 |
attggaacaacctaact |
12096212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 225
Target Start/End: Complemental strand, 12079788 - 12079572
Alignment:
| Q |
9 |
caagaaaatcccaaaaacaaccatccatcgtgtcaacttccttgagatagatggcgctgatgatcttgtcggtacaattccgcccctcatcgctgatcta |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||| |
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| T |
12079788 |
caagaaaatcccaaaaacaaccatccatcgtgtcaacttccttgagatagatggtgctgatgatcttgtcggtacaataccgccactcatcgccgatcta |
12079689 |
T |
|
| Q |
109 |
ccttacctcgagaccctcattttccgcctcctccctaaccttacaggtcctattcctcaagccattgcaagactgcctcaccttaaattcgtcctcctta |
208 |
Q |
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||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12079688 |
ccttacctcgagaccctcattttacgcctcctacctaacctaacaggtcctattcctcaagccattgcaagactgcctcaccttaaatttgtcctcctta |
12079589 |
T |
|
| Q |
209 |
attggaacaacctaact |
225 |
Q |
| |
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||||||||||||||||| |
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| T |
12079588 |
attggaacaacctaact |
12079572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 1248838 - 1249053
Alignment:
| Q |
9 |
caagaaaatcccaaaaacaaccatccatcgtgtcaacttccttgagatagatggcgctgatgatcttgtcggtacaattccgcccctcatcgctgatcta |
108 |
Q |
| |
|
||||||||||||||||||||| ||| | |||||||||||||| ||||| || || |||||||| || |||||||| || || || ||||| ||||| ||| |
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| T |
1248838 |
caagaaaatcccaaaaacaacaatctaccgtgtcaacttcctcgagatcgacggtgctgatgacctcgtcggtacgatccccccactcattgctgaccta |
1248937 |
T |
|
| Q |
109 |
ccttacctcgagaccctcattttccgcctcctccctaaccttacaggtcctattcctcaagccattgcaagactgcctcaccttaaattcgtcctcctta |
208 |
Q |
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|| ||||| ||||||||||| |||||| |||||||||||| || |||||||| |||||||||||||| | ||| ||||||||||| || |||||||||| |
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| T |
1248938 |
ccatacctggagaccctcatattccgcaacctccctaacctcaccggtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctcctta |
1249037 |
T |
|
| Q |
209 |
attggaacaacctaac |
224 |
Q |
| |
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| ||||||| |||||| |
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|
| T |
1249038 |
actggaacagcctaac |
1249053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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