View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6029_low_28 (Length: 247)
Name: NF6029_low_28
Description: NF6029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6029_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 7364052 - 7363834
Alignment:
| Q |
19 |
atttatatgtgaaaacaaatgtgtagtaatgtgctaaatacaagtatatgaaacgtggcctttagtgagtttgagctgctacttgtcatcatgaacaagg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7364052 |
atttatatgtgaaaacaaatgtgtagtaatgtgctaaatacaagtatatgaaacgtggcccttagtgagtttgagctgctacttgtcatcatgaacaagg |
7363953 |
T |
|
| Q |
119 |
ctaaccgtgtcaactattagccttactgttgatatatcttgtacacacttggcttaagcttttctatatagtttaattctcaagaacaaaattctcactt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7363952 |
ctaaccgtgtcaactattagccttactgttgatatatcttgtacacacttggcttaagcttttctatatagtttaattctcaagaacaaaattctcactt |
7363853 |
T |
|
| Q |
219 |
gatttccctttttcctttg |
237 |
Q |
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||||||||||||||||||| |
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| T |
7363852 |
gatttccctttttcctttg |
7363834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 26052611 - 26052779
Alignment:
| Q |
19 |
atttatatgtgaaaacaaatgtgtagtaatgtgctaaatacaagtatatgaaacgtggcctttagtgagtttgagctgctacttgtcatcatgaacaagg |
118 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26052611 |
atttatatgtgaaaacaaatgtgtagtaatgtgctcaatacaagtatttgaaacgtggcccttagtgagtttgagctgctacttgtcatcatgaacaagg |
26052710 |
T |
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| Q |
119 |
ctaaccgtgtcaactattagccttactgttgatatatcttgtacacacttggcttaagcttttctatat |
187 |
Q |
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| T |
26052711 |
ctaaccgtgtcaactattagccttattgttgatatatcttgtacacacttggcttaagcttttctatat |
26052779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 6171436 - 6171510
Alignment:
| Q |
19 |
atttatatgtgaaaacaaatgtgtagtaatgtgctaaatacaagtatatgaaacgtggcctttagtgagtttgag |
93 |
Q |
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||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| |
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| T |
6171436 |
atttataactgaaaacaaatgtgtagtaatgtgttaaatacaagtatatgaaacatggcccttagtgagtttgag |
6171510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 32028132 - 32028259
Alignment:
| Q |
19 |
atttatatgtgaaaacaaatgtgtagtaatgtgctaaatacaagtatatgaaacgtggcctttagtgagtttgagctgctacttgtcatcatgaacaagg |
118 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32028132 |
atttatatgtgaaaacaaatgtgtagtaatgtgctaaattcaagtatatgaaacgtggcccttagtgagtttgagctgctacttgtcatcatgaacaagg |
32028231 |
T |
|
| Q |
119 |
ctaaccgtgtcaactattagccttactg |
146 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
32028232 |
ctaaccgtgtcaactattagccttactg |
32028259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 25638865 - 25638914
Alignment:
| Q |
19 |
atttatatgtgaaaacaaatgtgtagtaatgtgctaaatacaagtatatg |
68 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25638865 |
atttatatgtgaaaacaaatgtgtagtaatgtgctaaatacaagtatatg |
25638914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 13858935 - 13858889
Alignment:
| Q |
67 |
tgaaacgtggcctttagtgagtttgagctgctacttgtcatcatgaa |
113 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||| |||| |
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| T |
13858935 |
tgaaacttggcccttagtgagtttgagctgctacttgtcatcttgaa |
13858889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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