View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6029_low_3 (Length: 532)
Name: NF6029_low_3
Description: NF6029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6029_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 16 - 514
Target Start/End: Complemental strand, 49094656 - 49094161
Alignment:
| Q |
16 |
attctagaaactagttcatcaaaagaatataattaaatattgggagaagaaggaatattgtgtgttggtgttccttgtgatgatggtatcagagattgca |
115 |
Q |
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| T |
49094656 |
attctagaaactagttcatcaaaagaatataattatatatcgggagaagaaggaatattgtgtgttggtgttccttgtgatgatggtatcagagattgca |
49094557 |
T |
|
| Q |
116 |
tagaggagatgcacataacttcatttgcagatacattgaatccacatcttccaccagatttcatacagtcgtgacatttctcttcatcatccacaccact |
215 |
Q |
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| T |
49094556 |
tagaggagatgcacataacttcatttgcagatacattgaatccacatcttccaccagatttcatgcagtcgtgacatttctcttcatcatccacaccact |
49094457 |
T |
|
| Q |
216 |
ctagctaatctcaaatccctgctctaaagtaagtttgcttgtgaatgaagaagtattcaggctaggaacaaagacctttttcttacacttgagaacatta |
315 |
Q |
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|||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
49094456 |
ctagctaatctcaaatcccttctctaaagtaagtttgtttgtgaatgaag---tattcaggctaggaacaaagacctttttcttacacttgagaacatca |
49094360 |
T |
|
| Q |
316 |
aaatccacaaccttagtgcttaaaactaagtacgcaaattgataattaccatccttggagcacatcatctcttcaaagatttctaaagtcatcggataag |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
49094359 |
aaatccacaaccttagtgcttaaaactaagtacgcaaattgataattaccatccttggagcacatcatctcttcaaagatttctaaagtcatcggacaag |
49094260 |
T |
|
| Q |
416 |
aaattcgaccaggaagaggaccacactcaaacaatagagtatataattgacattattggaagtgtagtggaagaaattcaaatccatgtctacataagt |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49094259 |
aaattcgaccaggaagaggaccacactcaaacaatagagtatataattgacattattggaagtgtagtggaagaaattcaaatccatgtctacataagt |
49094161 |
T |
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