View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6029_low_36 (Length: 236)
Name: NF6029_low_36
Description: NF6029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6029_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 43012999 - 43013042
Alignment:
| Q |
1 |
aaaatcatgtgcagtattttgcaatttgaactatattgttatgc |
44 |
Q |
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| T |
43012999 |
aaaatcatgtgcagtattttgcaatttgaactatattgttatgc |
43013042 |
T |
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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 31255718 - 31255778
Alignment:
| Q |
94 |
tcgcttcgtcgacacagtcacgctctccagccaactcatcaaaatgtttcacctcaagtgt |
154 |
Q |
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| T |
31255718 |
tcgcttggttgacacagtcatgctctcccaccaactcatcagaaagtttcacttcaagtgt |
31255778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 49178632 - 49178693
Alignment:
| Q |
89 |
ttctatcgcttcgtcgacacagtcacgctctccagccaactcatcaaaatgtttcacctcaa |
150 |
Q |
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| T |
49178632 |
ttctgtcgcttcgtcgacacagtcacgttctccaccgatctcatcaaaacgcttcacctcaa |
49178693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 49171464 - 49171416
Alignment:
| Q |
101 |
gtcgacacagtcacgctctccagccaactcatcaaaatgtttcacctca |
149 |
Q |
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| T |
49171464 |
gtcgacacagtcacactctccacccaactcatcaaaacgcttcacctca |
49171416 |
T |
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