View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6029_low_5 (Length: 443)

Name: NF6029_low_5
Description: NF6029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6029_low_5
NF6029_low_5
[»] chr4 (2 HSPs)
chr4 (1-426)||(42233920-42234344)
chr4 (236-299)||(867260-867323)
[»] chr7 (1 HSPs)
chr7 (205-317)||(45685496-45685609)
[»] chr8 (3 HSPs)
chr8 (130-235)||(11772220-11772325)
chr8 (166-235)||(28388280-28388349)
chr8 (382-419)||(33503772-33503809)
[»] chr1 (2 HSPs)
chr1 (226-286)||(4535939-4535999)
chr1 (384-422)||(16754752-16754790)
[»] chr5 (2 HSPs)
chr5 (380-419)||(34842732-34842771)
chr5 (163-322)||(25784920-25785080)
[»] chr2 (1 HSPs)
chr2 (381-423)||(13414914-13414956)


Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 42233920 - 42234344
Alignment:
Q  1 tggcacgatttgggtgtggaagattggtttggctcataaaaaatcatggcgcgatttcatgcaatcatggcgcaattgtagacaatggtacaataataca 100  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42233920 tggcacgatttgggtgtagaagattggcttggctcataaaaaatcacggcgcgatttcatgcaatcatggcgcaattgtagacaatggtacaataataca 42234019  T
Q  101 atgtacggtttcatatcccaacacgatctaggcaaatcgtgacacaattttgcatgggtctaggtactatatatgccttcattcaacattttttgggttg 200  Q
    ||||||||||||||||| |||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42234020 atgtacggtttcatatcacaacacgatctaggcaaatcatgacacgattttgcgtgggtctaggtactatatatgccttcattcaacattttttgggttg 42234119  T
Q  201 cttcaagagatagaatcttgtcaaaccaaaagagaaaacttttagggaacttagaggttaagaagtgagtgtctctggttgagatttttgggtttggaaa 300  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||    
T  42234120 cttcaagagatagaatcttgtcaaacc-aaagagaaaacttttagggaacttagaggtgaagagttgagtgtctctggttgagatttttgggtttggaaa 42234218  T
Q  301 tacttcacaaaaaccttgggtaatgagatttcatcggacaaaatattaacaaaacaaatctcttgtattctcttaggatattgtgggattgagtgacttg 400  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||     
T  42234219 tacttcacaaaaaccttgggtaatgagatttcattggagaaaatattaacaaaaaaaatatcttgtattctcttaggatattgtgggattgagtaactta 42234318  T
Q  401 aaaaatgagtagaaattagagttgtt 426  Q
    ||||||||||||||||||||||||||    
T  42234319 aaaaatgagtagaaattagagttgtt 42234344  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 299
Target Start/End: Complemental strand, 867323 - 867260
Alignment:
Q  236 aaacttttagggaacttagaggttaagaagtgagtgtctctggttgagatttttgggtttggaa 299  Q
    ||||||||| ||||||||||||||||||  | ||||||| ||| ||||||| ||||||| ||||    
T  867323 aaacttttatggaacttagaggttaagagttaagtgtctttggatgagattcttgggttgggaa 867260  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 205 - 317
Target Start/End: Original strand, 45685496 - 45685609
Alignment:
Q  205 aagagatagaatcttgtcaaaccaaaagagaaaacttttagggaacttagaggttaagaagtgagtgtctct-ggttgagatttttgggtttggaaatac 303  Q
    |||||| ||||||||| || | |||| |||||||||||||||||||||| ||||||| |  ||||||||| | || ||||||| |||||||  |||| |     
T  45685496 aagagagagaatcttgacagatcaaatgagaaaacttttagggaacttaaaggttaaaagttgagtgtctttggggtgagattcttgggttgtgaaacaa 45685595  T
Q  304 ttcacaaaaacctt 317  Q
    |||||||| |||||    
T  45685596 ttcacaaacacctt 45685609  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 130 - 235
Target Start/End: Complemental strand, 11772325 - 11772220
Alignment:
Q  130 aggcaaatcgtgacacaattttgcatgggtctaggtactatatatgccttcattcaacattttttgggttgcttcaagagatagaatcttgtcaaaccaa 229  Q
    |||||||||||| | | ||||||| ||||||| | ||||||||| | ||| ||||  ||||||||  || ||||||||||| |||||||||  |||||||    
T  11772325 aggcaaatcgtggcgctattttgcctgggtctggatactatataagactttattcttcatttttttagtcgcttcaagagagagaatcttggaaaaccaa 11772226  T
Q  230 aagaga 235  Q
    | ||||    
T  11772225 aggaga 11772220  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 28388349 - 28388280
Alignment:
Q  166 actatatatgccttcattcaacattttttgggttgcttcaagagatagaatcttgtcaaaccaaaagaga 235  Q
    |||||||| ||||||||||| ||||||||||||  ||| |||||| |||||||||  |||||||| ||||    
T  28388349 actatataagccttcattcatcattttttgggtcccttgaagagagagaatcttgaaaaaccaaatgaga 28388280  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 33503772 - 33503809
Alignment:
Q  382 tgtgggattgagtgacttgaaaaatgagtagaaattag 419  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  33503772 tgtgggtttgagtgacttgaaaaatgggtagaaattag 33503809  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 286
Target Start/End: Complemental strand, 4535999 - 4535939
Alignment:
Q  226 ccaaaagagaaaacttttagggaacttagaggttaagaagtgagtgtctctggttgagatt 286  Q
    ||||||||| ||||||||||| ||||||||| ||||||  ||||||||| ||| |||||||    
T  4535999 ccaaaagaggaaacttttaggaaacttagagtttaagagttgagtgtctttggatgagatt 4535939  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 422
Target Start/End: Complemental strand, 16754790 - 16754752
Alignment:
Q  384 tgggattgagtgacttgaaaaatgagtagaaattagagt 422  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  16754790 tgggtttgagtgacttgaaaaatgagtaaaaattagagt 16754752  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 419
Target Start/End: Complemental strand, 34842771 - 34842732
Alignment:
Q  380 attgtgggattgagtgacttgaaaaatgagtagaaattag 419  Q
    |||||||| || ||||||||||||||||||||||||||||    
T  34842771 attgtgggttttagtgacttgaaaaatgagtagaaattag 34842732  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 322
Target Start/End: Complemental strand, 25785080 - 25784920
Alignment:
Q  163 ggtactatatatgccttcattcaacattttttgg-gttgcttcaagagatagaatcttgtcaaaccaaaagagaaaacttttagggaacttagaggttaa 261  Q
    ||||||||||| ||||| ||||| ||||||||   || ||||||||||| ||||| |||  |||| | | |||| |||||||| |||||||||||  |||    
T  25785080 ggtactatataagcctttattcatcattttttttagtggcttcaagagaaagaatattgaaaaactagatgagagaacttttaaggaacttagagtctaa 25784981  T
Q  262 gaagtgagtgtctctggttgagatttttgggtttggaaatacttcacaaaaaccttgggta 322  Q
     |  ||||||| | | | ||||||| ||||||  ||||| | ||| |||| ||||||||||    
T  25784980 aagttgagtgtttttaggtgagattcttgggtcgggaaacatttctcaaacaccttgggta 25784920  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 423
Target Start/End: Original strand, 13414914 - 13414956
Alignment:
Q  381 ttgtgggattgagtgacttgaaaaatgagtagaaattagagtt 423  Q
    ||||||| |||||||||||||||||| ||||||||||| ||||    
T  13414914 ttgtgggtttgagtgacttgaaaaattagtagaaattaaagtt 13414956  T

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