View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6029_low_7 (Length: 391)
Name: NF6029_low_7
Description: NF6029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6029_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 376
Target Start/End: Complemental strand, 16013417 - 16013060
Alignment:
| Q |
19 |
ttttataaataagtgaaaatgatagataatccttttcagggcgcaaatatcttctaaatacagcctgcaaagtataagttagtgctaacataaccgtaaa |
118 |
Q |
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| T |
16013417 |
ttttataaataagtgaaaatgatagataatccttttcaggtcgcaaatatcttctaaatacagcctgcaaagtataagttagtgctaacataaccgtaaa |
16013318 |
T |
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| Q |
119 |
tttagcttcttatattgatcaagcatcattaacttactgttctctgtcctgagatgatgcgcaaaaccgaagacaacttcagattcttttcctttccatg |
218 |
Q |
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| T |
16013317 |
tctagcttcttatattgatcaagcatcattaacttactgttctctgtcctgagatgatgcgcaaaaccgaagacaacttcagattcttttcctttccatg |
16013218 |
T |
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| Q |
219 |
agaaatccaaattagtgatgtttcatcctgctaatgccactaaatatgaaaccatccgtacaatgacttgaaattcaatgcatataagtaataaccgaaa |
318 |
Q |
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| T |
16013217 |
agaaatccaaattagtgatgtttcatcctgctaatgccactaaatatgaaaccatccgtacaatgacttgaaattcaatgcatataagtaataacagaaa |
16013118 |
T |
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| Q |
319 |
attcagctctaaagtaaagagagaaatatacacacaataacatagcgaatgatcacag |
376 |
Q |
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| T |
16013117 |
attcagctctaaagtaaagagataaatatacacacaataacatagcgattgatcacag |
16013060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 206 - 269
Target Start/End: Original strand, 26893108 - 26893171
Alignment:
| Q |
206 |
tttcctttccatgagaaatccaaattagtgatgtttcatcctgctaatgccactaaatatgaaa |
269 |
Q |
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| T |
26893108 |
tttcctttttatgagaaatccaaattagtgttgtttcatcctgttaatgccactaaatatgaaa |
26893171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 26892909 - 26892977
Alignment:
| Q |
21 |
ttataaataagtgaaaatgatagataatccttttcagggcgcaaatatcttctaaatacagcctgcaaa |
89 |
Q |
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||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||| ||| ||| |||| |
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| T |
26892909 |
ttataaacaagcgaaaatgaaagataatccttttcaggctgcaaatatcttctaaagacaaccttcaaa |
26892977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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