View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6030_high_3 (Length: 416)
Name: NF6030_high_3
Description: NF6030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6030_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 116 - 408
Target Start/End: Complemental strand, 48092358 - 48092056
Alignment:
| Q |
116 |
ccatgattgatactactaaccaattatttatataatttgaccgtgaaataaatcaaatcaaat----------aatggatcacatgcaatgaaaaagaga |
205 |
Q |
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| T |
48092358 |
ccatgattgatactactaaccaattatttatataatttgaccgtgaaataaatcaaatcaaatcaaatcaaataatggatcacatgctatgaaaaagaga |
48092259 |
T |
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| Q |
206 |
gtaatttaccctcaaaatcttcttatattcagatattatatatctgacataatccggtaaattgtattggcgtgatcttgcagagaatggcactaagtaa |
305 |
Q |
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| T |
48092258 |
gtaatttaccctcaaaatcttcttatattcagatattatatatctgacataatccggtaaattgtattggcgtgatcttgcagagaatggcactaagtaa |
48092159 |
T |
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| Q |
306 |
tagttattcacaaaatcatttcctccaagagtgatgagtactaatgctccattcactaagctctgagtttgttcaggtccaataagaccactcactctct |
405 |
Q |
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| T |
48092158 |
tagttattcacaaaatcatttcctccaagagtgatgagtactaatgctccattcactaagctctgagtttgttcaggtccaataagaccactcactctct |
48092059 |
T |
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| Q |
406 |
gct |
408 |
Q |
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||| |
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| T |
48092058 |
gct |
48092056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 48092432 - 48092352
Alignment:
| Q |
1 |
ccacattacatcatgtcactttttatccaatcttatgtttgatacaaaatttatctgacttctacgccatatatccatgat |
81 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48092432 |
ccacattacatcatgtcactttttatccaatcttatgtttgatacaaaatttatctgacttctacgccatatatccatgat |
48092352 |
T |
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