View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6030_high_4 (Length: 332)
Name: NF6030_high_4
Description: NF6030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6030_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 49424009 - 49423713
Alignment:
| Q |
19 |
aggtttgtatcaactgctccttgaatacttagtatgcctgtggagaaccgagaaactcacgtcttataggtctaataaattcaaaaaataatggaaatga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
49424009 |
aggtttgtatcaactgctccttgaatacttagtatgcctgtggagaaccgagaaactcacgtcttataggtctaataaattcaaaaaataatggaa-tga |
49423911 |
T |
|
| Q |
119 |
gaatcaagcttttgaactgtcttaacaagccatttggggaagcttgttcagtgttttaattcaattgttcaaccttcattttaaacttaaagatggagat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
49423910 |
gaatcaagcttttgaactgtcttaacaagccatttggggaagcttgttcagtgttttaattcaattgttcaaccttcattttaaacttaaagttggagat |
49423811 |
T |
|
| Q |
219 |
ggttgatagattcaactttcaagacattagggataacattttttatgctcgtacaatttcggccattacagatttgcaatatcacgttacaacttcat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49423810 |
ggttgatagattcaactttcaagacattagggataacattttttatgctcgtacaatttcggccattacagatttgcaatatcacgttacaacttcat |
49423713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 125 - 316
Target Start/End: Complemental strand, 49426060 - 49425870
Alignment:
| Q |
125 |
agcttttgaactgtcttaacaagccatttggggaagcttgttcagtgttttaattcaattgttcaaccttcattttaaacttaaagatggagatggttga |
224 |
Q |
| |
|
||||||||||||||||||| | ||||||||||| ||||||||| ||| |||||||| ||||||||| | |||||||| || | ||||||||| | |
|
|
| T |
49426060 |
agcttttgaactgtcttaatgaatcatttggggaaacttgttcagcttttcaattcaatagttcaacctctagtttaaactaaatgtatgagatggttca |
49425961 |
T |
|
| Q |
225 |
tagattcaactttcaagacattagggataacattttttatgctcgtacaatttcggccattacagatttgcaatatcacgttacaacttcat |
316 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||| ||| |||| || ||||| |||| | || ||| ||||| ||| ||||||||||||| |
|
|
| T |
49425960 |
tagtttcaactttcaagacattagggatagcatttcttacgctcttaagatttc-gccaattcatattggcaatgtcatgttacaacttcat |
49425870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 114 - 261
Target Start/End: Original strand, 43363148 - 43363293
Alignment:
| Q |
114 |
aatgagaatcaagcttttgaactgtcttaacaagccatttggggaagcttgttcagtgttttaattcaattgttcaaccttcattttaaacttaaagatg |
213 |
Q |
| |
|
|||||||| ||| ||||||| |||||||| || |||||||||||||||||| ||||||| | |||||||||||||| || |||||||| | | | |
|
|
| T |
43363148 |
aatgagaaggaagtttttgaattgtcttaatgagtcatttggggaagcttgtttagtgtttcacttcaattgttcaacaaccagtttaaact--atgtag |
43363245 |
T |
|
| Q |
214 |
gagatggttgatagattcaactttcaagacattagggataacattttt |
261 |
Q |
| |
|
|||||| || |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43363246 |
gagatgattaatagattcaactttcaagacataagggataacattttt |
43363293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 255
Target Start/End: Complemental strand, 17641030 - 17640992
Alignment:
| Q |
217 |
atggttgatagattcaactttcaagacattagggataac |
255 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
17641030 |
atggttgatagattcaactttcaagaatttagggataac |
17640992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University