View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6030_low_1 (Length: 423)
Name: NF6030_low_1
Description: NF6030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6030_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 14 - 365
Target Start/End: Complemental strand, 48091959 - 48091602
Alignment:
| Q |
14 |
aatgtatgtttgaattagaaccgtgcgtgagtttgacataatcacaatgtcaattcaaaaatacactaagataagaatttcacttacaaactggattccg |
113 |
Q |
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| T |
48091959 |
aatgtatgtttgaattagacccgtgcgtgagtttgacaaaatcacaatgtcaattcaaaaatacactaagataagaatttcacttacaaactggattccg |
48091860 |
T |
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| Q |
114 |
gtatcattgagaattccaatgccagcggaagcaaaattggcaccgactagtagcgcctctccattgagttcaggacttaaataaggcaacgttggttctg |
213 |
Q |
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| T |
48091859 |
gtatcattgagaattccaatgccagcggaagcaaaattggcaccaactagtagcgcctctccattgagttcaggacttaaataaggcaacgttggttctg |
48091760 |
T |
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| Q |
214 |
ccccaagtgcttgacctgcaaaatcattgcat-------nnnnnnnnnctatataagtttaatgttaatcacattattatgggggatataaattttgcat |
306 |
Q |
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| T |
48091759 |
ccccaagtgcttgacctgcaaaatcattgcataaaaaaaaaaaaaaaactatataagtttaatgttaatcacattattatgggggatataaattttgcat |
48091660 |
T |
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| Q |
307 |
ggttgctgagtgagggagaattaggtcgaagattcaatcttcactctcaacatagaaat |
365 |
Q |
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| T |
48091659 |
ggttgctgagtgagggagaattaggtcgaagattcaatcttcactctcaa-atagaaat |
48091602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 94 - 190
Target Start/End: Complemental strand, 48074789 - 48074693
Alignment:
| Q |
94 |
cacttacaaactggattccggtatcattgagaattccaatgccagcggaagcaaaattggcaccgactagtagcgcctctccattgagttcaggact |
190 |
Q |
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| T |
48074789 |
cacttacaaattgaattccagtatcattgagaattccaattccagcagaagcgaaattggcaccaactagtagcgcctctccattgagttcaggact |
48074693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 48084189 - 48084126
Alignment:
| Q |
94 |
cacttacaaactggattccggtatcattgagaattccaatgccagcggaagcaaaattggcacc |
157 |
Q |
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| T |
48084189 |
cacttacaaactggaatccggtatcattgagaattccaatcccagcggatgcaaagttggcacc |
48084126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 383 - 414
Target Start/End: Complemental strand, 48091611 - 48091580
Alignment:
| Q |
383 |
aaatagaaatgaatgattatcttaactgatga |
414 |
Q |
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| T |
48091611 |
aaatagaaatgaatgattatcttaactgatga |
48091580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 1808118 - 1808056
Alignment:
| Q |
95 |
acttacaaactggattccggtatcattgagaattccaatgccagcggaagcaaaattggcacc |
157 |
Q |
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| T |
1808118 |
acttacaaattgaactccggtatcattaaggattccaattccagctgaaccaaaattggcacc |
1808056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 35372231 - 35372298
Alignment:
| Q |
95 |
acttacaaactggattccggtatcattgagaattccaatgccagcggaagcaaaattggcaccgacta |
162 |
Q |
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| T |
35372231 |
acttacaaattgaattcctgtatcattaagaattccaacgcccgcagaagcaaaattggcaccaacta |
35372298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 35377880 - 35377947
Alignment:
| Q |
95 |
acttacaaactggattccggtatcattgagaattccaatgccagcggaagcaaaattggcaccgacta |
162 |
Q |
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| T |
35377880 |
acttacaaattgaaatccagtatcattgagaattccaatacccgcggatgcaaaattggcaccaacta |
35377947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 35358962 - 35359029
Alignment:
| Q |
95 |
acttacaaactggattccggtatcattgagaattccaatgccagcggaagcaaaattggcaccgacta |
162 |
Q |
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| T |
35358962 |
acttacaaattgaaatccggtatcattgagaattccaacacctgctgatgcaaaattggcaccaacta |
35359029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 35354966 - 35355032
Alignment:
| Q |
91 |
tttcacttacaaactggattccggtatcattgagaattccaatgccagcggaagcaaaattggcacc |
157 |
Q |
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| T |
35354966 |
tttcacatacaaattgaaatccagtgtcattgagaattccaatgccggcagaagcaaagttggcacc |
35355032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 29768827 - 29768884
Alignment:
| Q |
97 |
ttacaaactggattccggtatcattgagaattccaatgccagcggaagcaaaattggc |
154 |
Q |
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| T |
29768827 |
ttacaaattgaatgccggtgtcattaagaattccaatcccagctgaagcaaaattggc |
29768884 |
T |
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