View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6030_low_10 (Length: 242)

Name: NF6030_low_10
Description: NF6030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6030_low_10
NF6030_low_10
[»] chr3 (7 HSPs)
chr3 (1-199)||(5454390-5454588)
chr3 (1-199)||(5445807-5446006)
chr3 (1-174)||(5489579-5489752)
chr3 (1-145)||(5502428-5502572)
chr3 (8-106)||(5525284-5525382)
chr3 (8-106)||(5484159-5484257)
chr3 (8-181)||(5849380-5849552)
[»] chr6 (3 HSPs)
chr6 (1-199)||(25809806-25810005)
chr6 (200-242)||(26452312-26452354)
chr6 (199-242)||(26446499-26446542)
[»] chr8 (4 HSPs)
chr8 (198-242)||(24750110-24750154)
chr8 (199-242)||(24744388-24744431)
chr8 (200-242)||(43579675-43579717)
chr8 (200-242)||(43583593-43583635)
[»] chr5 (2 HSPs)
chr5 (200-242)||(21006135-21006177)
chr5 (200-242)||(21011887-21011929)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 5454390 - 5454588
Alignment:
Q  1 ttccagagaaataacttctttatataccctgaagtaacaatttaagtggtttaatgttaaaaaagtaaaggaacacatcaatcaaagttcagagttcatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5454390 ttccagagaaataacttctttatataccctgaagtaacaatttaagtggtttaatgttaaaaaagtaaaggaacacatcaatcaaacttcagagttcatt 5454489  T
Q  101 gtaagttgtaactaattctgtttgcagcactatttgagtaagtaaatcaaaaatatttgaaatttacttgtcataacttttggcttaccaatcttcttt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5454490 gtaagttgtaactaattctgtttgcagcactatttgagtaagtaaatcaaaaatatttgaaatttacttttcataacttttggcttaccaatcttcttt 5454588  T

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Target: chr3; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 5445807 - 5446006
Alignment:
Q  1 ttccagagaaataacttctttatataccctgaagtaacaatttaagtggtttaatgtt-aaaaaagtaaaggaacacatcaatcaaagttcagagttcat 99  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||| ||||||||||||    
T  5445807 ttccagagaaataacttttttatatgccctgaagtaacaatttaagttgtttaatgtttaaaaaagtaaaggaacacatcactcaaacttcagagttcat 5445906  T
Q  100 tgtaagttgtaactaattctgtttgcagcactatttgagtaagtaaatcaaaaatatttgaaatttacttgtcataacttttggcttaccaatcttcttt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||| |||||||    
T  5445907 tgtaagttgtaactaattctgtttgcagcactatttgagtaagtaaattataaatatttgagatttacttgtcataacttttggcttaccaagcttcttt 5446006  T

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Target: chr3; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 5489579 - 5489752
Alignment:
Q  1 ttccagagaaataacttctttatataccctgaagtaacaatttaagtggtttaatgttaaaaaagtaaaggaacacatcaatcaaagttcagagttcatt 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||    
T  5489579 ttccagagaaataacttttttatataccctgaagtaacaatttaagtggttgaatgttaagaaagtaaaggaacacatcaatcaaacttcagagttcatt 5489678  T
Q  101 gtaagttgtaactaattctgtttgcagcactatttgagtaagtaaatcaaaaatatttgaaatttacttgtcat 174  Q
    |||| ||||||||||||||||||||| ||||||||||||||||| |||| |||||||||| |||||||||||||    
T  5489679 gtaatttgtaactaattctgtttgcatcactatttgagtaagtatatcataaatatttgagatttacttgtcat 5489752  T

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Target: chr3; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 5502428 - 5502572
Alignment:
Q  1 ttccagagaaataacttctttatataccctgaagtaacaatttaagtggtttaatgttaaaaaagtaaaggaacacatcaatcaaagttcagagttcatt 100  Q
    ||||||||||||||||| ||||||||||||||||||||| |||| || |||||||||||| |||||||  ||||||||| |||||| || ||||||||||    
T  5502428 ttccagagaaataacttttttatataccctgaagtaacagtttatgttgtttaatgttaagaaagtaacagaacacatctatcaaactttagagttcatt 5502527  T
Q  101 gtaagttgtaactaattctgtttgcagcactatttgagtaagtaa 145  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||    
T  5502528 gtaatttgtaactaattctgtttgcagcgctatttgagtaagtaa 5502572  T

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Target: chr3; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 5525284 - 5525382
Alignment:
Q  8 gaaataacttctttatataccctgaagtaacaatttaagtggtttaatgttaaaaaagtaaaggaacacatcaatcaaagttcagagttcattgtaagt 106  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||| || |||||||||| ||| | |||||||| |||||||||||||||||||    
T  5525284 gaaataactttttaatataccctgaagtaacaatttaagtggtttaatgtcaacaaagtaaagggacaaagcaatcaaatttcagagttcattgtaagt 5525382  T

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Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 5484159 - 5484257
Alignment:
Q  8 gaaataacttctttatataccctgaagtaacaatttaagtggtttaatgttaaaaaagtaaaggaacacatcaatcaaagttcagagttcattgtaagt 106  Q
    ||||||||||  |||||||||||||||||| ||||||||||||||||||| ||||||||| ||| ||| | |||||||| | |||||||||||||||||    
T  5484159 gaaataactttcttatataccctgaagtaataatttaagtggtttaatgtaaaaaaagtatagggacaaagcaatcaaactccagagttcattgtaagt 5484257  T

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Target: chr3; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 5849552 - 5849380
Alignment:
Q  8 gaaataacttctttatataccctgaagtaacaatttaagtggtttaatgttaaaaaagtaaaggaacacatcaatcaaagttcagagttcattgtaagtt 107  Q
    |||||||||| |||||||| |||||||||||||||||||||||| |||||||| |||||||||  ||| |||||  ||| ||   | |||||||||||||    
T  5849552 gaaataacttttttatataacctgaagtaacaatttaagtggttcaatgttaacaaagtaaagtgacaaatcaacgaaactttgaaattcattgtaagtt 5849453  T
Q  108 gtaac---taattctgtttgcagcactatttgagtaagtaaatcaaaaatatttgaaatttacttgtcataactttt 181  Q
    |||||   ||| |||  ||  || ||||||    ||| |||||||||||||||||| ||||| || |||||||||||    
T  5849452 gtaacatttaactctactttgagtactatt----taattaaatcaaaaatatttgacatttaattatcataactttt 5849380  T

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Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 25810005 - 25809806
Alignment:
Q  1 ttccagagaaataacttctttatataccctgaagtaacaatttaagtggtttaatgtt-aaaaaagtaaaggaacacatcaatcaaagttcagagttcat 99  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||| ||||||||||||    
T  25810005 ttccagagaaataacttttttatatgccctgaagtaacaatttaagttgtttaatgtttaaaaaagtaaaggaacacatcactcaaacttcagagttcat 25809906  T
Q  100 tgtaagttgtaactaattctgtttgcagcactatttgagtaagtaaatcaaaaatatttgaaatttacttgtcataacttttggcttaccaatcttcttt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||| |||||||    
T  25809905 tgtaagttgtaactaattctgtttgcagcactatttgagtaagtaaattataaatatttgagatttacttgtcataacttttggcttaccaagcttcttt 25809806  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 26452354 - 26452312
Alignment:
Q  200 ggcttaatgcatacgcaggtcccttaacttattttttcttctc 242  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  26452354 ggcttaatgcatacgcaggtcccttaacttattttttcttctc 26452312  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 199 - 242
Target Start/End: Original strand, 26446499 - 26446542
Alignment:
Q  199 tggcttaatgcatacgcaggtcccttaacttattttttcttctc 242  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  26446499 tggcttaatgcatacgcatgtcccttaacttattttttcttctc 26446542  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 24750154 - 24750110
Alignment:
Q  198 ttggcttaatgcatacgcaggtcccttaacttattttttcttctc 242  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  24750154 ttggcttaatgcatacgcaagtcccttaacttattttttcttctc 24750110  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 199 - 242
Target Start/End: Original strand, 24744388 - 24744431
Alignment:
Q  199 tggcttaatgcatacgcaggtcccttaacttattttttcttctc 242  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  24744388 tggcttaatgcatacggaggtcccttaacttattttttcttctc 24744431  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 43579675 - 43579717
Alignment:
Q  200 ggcttaatgcatacgcaggtcccttaacttattttttcttctc 242  Q
    |||||||| |||||||| ||| |||||||||||||||||||||    
T  43579675 ggcttaatacatacgcaagtctcttaacttattttttcttctc 43579717  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 43583635 - 43583593
Alignment:
Q  200 ggcttaatgcatacgcaggtcccttaacttattttttcttctc 242  Q
    |||||||| |||||||| ||||||||| |||||||||||||||    
T  43583635 ggcttaatacatacgcatgtcccttaatttattttttcttctc 43583593  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 21006135 - 21006177
Alignment:
Q  200 ggcttaatgcatacgcaggtcccttaacttattttttcttctc 242  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  21006135 ggcttaatacatacgcaggtcccttaacttattttttcttctc 21006177  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 21011929 - 21011887
Alignment:
Q  200 ggcttaatgcatacgcaggtcccttaacttattttttcttctc 242  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  21011929 ggcttaatacatacgcaggtcccttaacttattttttcttctc 21011887  T

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