View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6030_low_13 (Length: 229)
Name: NF6030_low_13
Description: NF6030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6030_low_13 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 28721864 - 28721645
Alignment:
| Q |
16 |
catggatcatatgaacaacttaaattcatatacagtaggcaagacaaattataatgaaacatgaatatgccnnnnnnnt------tgaagtcatcgaatc |
109 |
Q |
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| T |
28721864 |
catggatcatatgaacaactaaaattcatataaagtatgcatgacaaattataatgaaacatgaatatgccaaaaaaaaaaaaaatgaagtcatcggatc |
28721765 |
T |
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| Q |
110 |
caaagaaaattatatatatgaatttgtatcgattcaaaattaaaagacaaaaccaaggccatgacataataaaagcaaccggtctcaaatacatggcttg |
209 |
Q |
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| T |
28721764 |
caaagaaaattatatatatgaatttgtatcgattcaaaattaaaagacaaaaccaaggccatgacataataaaagcaacaggtctcaaatacatggcttg |
28721665 |
T |
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| Q |
210 |
cataaactaattgaatcaac |
229 |
Q |
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|||||||||||||||||||| |
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| T |
28721664 |
cataaactaattgaatcaac |
28721645 |
T |
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