View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6030_low_14 (Length: 219)
Name: NF6030_low_14
Description: NF6030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6030_low_14 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 17445746 - 17445528
Alignment:
| Q |
1 |
caaatcaaactccaaccctttcttcttcaattcctccacgcatttcctcaacaatccacgatcctctttctccctcaacagcatcttctccatatgagcc |
100 |
Q |
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| T |
17445746 |
caaatcaaactccaaccctttcttcttcaattcctccacacatttcctcaacaatccgcgatcctctttctccctcgacagcatcttctccatatgagcc |
17445647 |
T |
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| Q |
101 |
tctacatcactcttatacctcaaagcccatataagccccaatgaaaataacagagaacagagtgatgggacccacgatttgtgacaggttttaggtgtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | |||||||||| |
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| T |
17445646 |
tctacatcactcttatacctcaaagcccatataagccccaatgagaataacagagaacagagtgatgggacccatgatttgtgacaagctttaggtgttg |
17445547 |
T |
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| Q |
201 |
tagaagaggaagagttgaa |
219 |
Q |
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| T |
17445546 |
taacagaggaagagttgaa |
17445528 |
T |
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