View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6030_low_5 (Length: 316)

Name: NF6030_low_5
Description: NF6030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6030_low_5
NF6030_low_5
[»] chr4 (1 HSPs)
chr4 (5-301)||(41649059-41649355)


Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 5 - 301
Target Start/End: Original strand, 41649059 - 41649355
Alignment:
Q  5 gagtagcatagggaatgtgaaatataagttttgccccacttgtaattgtttcagttatgaaatggaatttaatttacaaattagagccctccttgatttg 104  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41649059 gagtagtatagggaatgtgaaatataagttttgccccacttgtaattgtttcagttatgaaatggaatttaatttacaaattatagccctccttgatttg 41649158  T
Q  105 aagtgatagcttacgtatacgttattttacctatacacacagtgtaatttatatctggttggaagttatcataactgcttaatatgcttgcttgattgcc 204  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41649159 aagtgatagcttacatatacgttattttacctatacacacagtgtaatttatatctggttggaagttatcataactgcttaatatgcttgcttgattgcc 41649258  T
Q  205 aatagaggttgatccattggatgatactgtttgtgatataccagccttagggactaaacaacaatcaccaaaattcaaacttttggactgagattct 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41649259 aatagaggttgatccattggatgatactgtttgtgatataccagcctaagggactaaacaacaatcaccaaaattcaaacttttggactgagattct 41649355  T

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