View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6030_low_6 (Length: 301)

Name: NF6030_low_6
Description: NF6030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6030_low_6
NF6030_low_6
[»] chr3 (13 HSPs)
chr3 (18-298)||(5453900-5454180)
chr3 (18-298)||(5445317-5445597)
chr3 (31-280)||(20342657-20342906)
chr3 (18-280)||(5483645-5483907)
chr3 (18-283)||(5803349-5803614)
chr3 (19-272)||(5829038-5829291)
chr3 (50-283)||(5849776-5850009)
chr3 (49-283)||(5501973-5502207)
chr3 (49-295)||(5489124-5489370)
chr3 (49-283)||(5524841-5525075)
chr3 (18-295)||(5854931-5855192)
chr3 (77-189)||(1107249-1107361)
chr3 (196-266)||(3120899-3120969)
[»] chr6 (2 HSPs)
chr6 (18-298)||(25810215-25810495)
chr6 (77-223)||(3979330-3979476)
[»] chr8 (8 HSPs)
chr8 (75-224)||(23392835-23392984)
chr8 (154-224)||(23285660-23285730)
chr8 (106-224)||(23341769-23341887)
chr8 (106-224)||(23385247-23385365)
chr8 (207-272)||(19398702-19398767)
chr8 (207-272)||(19415058-19415123)
chr8 (152-189)||(4120878-4120915)
chr8 (69-141)||(23189382-23189454)
[»] chr7 (6 HSPs)
chr7 (93-188)||(20279110-20279205)
chr7 (93-188)||(20062950-20063045)
chr7 (93-188)||(20168505-20168600)
chr7 (92-188)||(20231129-20231225)
chr7 (124-188)||(20263584-20263648)
chr7 (124-188)||(20283687-20283751)
[»] chr2 (1 HSPs)
chr2 (152-215)||(34328536-34328599)
[»] chr4 (2 HSPs)
chr4 (152-221)||(31732684-31732753)
chr4 (152-221)||(31745585-31745654)


Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 5453900 - 5454180
Alignment:
Q  18 aactacattttgacaagagaaaaattgagataaataaatttggttggtgtgaaagttcaaaccaaaaataaagcaatccaagcttctgttgggcatgaat 117  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5453900 aactacatttcggcaagagaaaaattgagataaataaatttggttggtgtgaaagttcaaaccaaaaataaagcaatccaagcttctgttgggcatgaat 5453999  T
Q  118 tcgtagatcaacatcttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttga 217  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5454000 tcgtagatcaacaacttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttga 5454099  T
Q  218 actcctcagttccttgtcccgatgttttagaaagcctcttaacagcaatctcttggccgtctaccagtacggcctagtcat 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5454100 actcctcagttccttgtcccgatgttttagaaagcctcttaacagcaatctcttggccgtctaccagtacggcctagtcat 5454180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 5445317 - 5445597
Alignment:
Q  18 aactacattttgacaagagaaaaattgagataaataaatttggttggtgtgaaagttcaaaccaaaaataaagcaatccaagcttctgttgggcatgaat 117  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5445317 aactacatttcggcaagagaaaaattgagataaataaatttggttggtgtgaaagttcaaaccaaaaataaagaaatccaagcttctgttgggcatgaat 5445416  T
Q  118 tcgtagatcaacatcttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5445417 tcgtagatcaacatcttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttga 5445516  T
Q  218 actcctcagttccttgtcccgatgttttagaaagcctcttaacagcaatctcttggccgtctaccagtacggcctagtcat 298  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  5445517 actcctcagttccttgtcctgatgttttagaaagcctcttaacagcaatctcttggccgtctaccattacgccctagtcat 5445597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 31 - 280
Target Start/End: Original strand, 20342657 - 20342906
Alignment:
Q  31 caagagaaaaattgagataaataaatttggttggtgtgaaagttcaaaccaaaaataaagcaatccaagcttctgttgggcatgaattcgtagatcaaca 130  Q
    |||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  20342657 caagagaaaaattgagatcaataaattgggttggtgtgaaaattcaaaccaaaaataaagaaatccaagcttctgttgggcatgaattcatagatcaaca 20342756  T
Q  131 tcttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttcc 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20342757 tcttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcaattcc 20342856  T
Q  231 ttgtcccgatgttttagaaagcctcttaacagcaatctcttggccgtcta 280  Q
    |||||||||||||||||||||||||||||| || ||||||||||| ||||    
T  20342857 ttgtcccgatgttttagaaagcctcttaacggcgatctcttggccatcta 20342906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 5483645 - 5483907
Alignment:
Q  18 aactacattttgacaagagaaaaattgagataaataaatttggttggtgtgaaagttcaaaccaaaaataaagcaatccaagcttctgttgggcatgaat 117  Q
    ||||||||| || |||||| |||  ||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  5483645 aactacattatggcaagagtaaacctgagagaaataaatttggttggtgtgaaagttcaaaccaaaaataaagttatccaagcttctgttgggcatgaat 5483744  T
Q  118 tcgtagatcaacatcttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttga 217  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  5483745 tcgtagatcaacaacttttcatcttgttgaatagaacaaccaagaagttttactagattacggtgttgaagtgttgccatcatctttacttcatttttga 5483844  T
Q  218 actcctcagttccttgtcccgatgttttagaaagcctcttaacagcaatctcttggccgtcta 280  Q
    ||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  5483845 actcctcggatccttgtctcgatgttttagaaagcctcttaacagcaatctcttggccatcta 5483907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 5803614 - 5803349
Alignment:
Q  18 aactacattttgacaagagaaaaattgagataaataaatttggttggtgtgaaagttcaaaccaaaaataaagcaatccaagcttctgttgggcatgaat 117  Q
    ||||||||| || |||||| |||  ||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5803614 aactacattatggcaagagtaaacctgagagaaataaaattggttggtgtgaaagttcaaaccaaaaataaagtaatccaagcttctgttgggcatgaat 5803515  T
Q  118 tcgtagatcaacatcttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttga 217  Q
    || |||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5803514 tcatagatcaacaacttttcatcttgttgaatagaacagccaagaagttttactagattacggtgttgaagtgttgccatcaactttacttcatttttga 5803415  T
Q  218 actcctcagttccttgtcccgatgttttagaaagcctcttaacagcaatctcttggccgtctacca 283  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  5803414 actcctcggatccttgtcccgatgttttagaaagcctcttaacagcaatctcttgcccatctacca 5803349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 5829291 - 5829038
Alignment:
Q  19 actacattttgacaagagaaaaattgagataaataaatttggttggtgtgaaagttcaaaccaaaaataaagcaatccaagcttctgttgggcatgaatt 118  Q
    ||||||||||| ||| |||||||||||||| | || ||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  5829291 actacattttggcaatagaaaaattgagatgagtatatttggtaggtgtgaaagttcaaaccaaaaataaagtaatccaagcttctgtttggcatgaatt 5829192  T
Q  119 cgtagatcaacatcttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaa 218  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5829191 cgtagatcaacaacttttcatcttgttgaatagaacaaccaaaaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaa 5829092  T
Q  219 ctcctcagttccttgtcccgatgttttagaaagcctcttaacagcaatctcttg 272  Q
     ||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  5829091 ttcctcagttccttgtcctgatgttttagatagcctcttaacagcaatctcttg 5829038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 50 - 283
Target Start/End: Complemental strand, 5850009 - 5849776
Alignment:
Q  50 aataaatttggttggtgtgaaagttcaaaccaaaaataaagcaatccaagcttctgttgggcatgaattcgtagatcaacatcttttcatcttgttgaat 149  Q
    |||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  5850009 aataaattaggttagtgtgaaagttcaaaccaaaaataaagtaatccaagcttctgttgggcatgaattcatagatcaacaacttttcatcttgttgaat 5849910  T
Q  150 agaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttccttgtcccgatgttttagaa 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||| ||    
T  5849909 agaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcaactccttgtcccgatgtattacaa 5849810  T
Q  250 agcctcttaacagcaatctcttggccgtctacca 283  Q
    |||||||||||||||||||||||||| |||||||    
T  5849809 agcctcttaacagcaatctcttggccatctacca 5849776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 49 - 283
Target Start/End: Original strand, 5501973 - 5502207
Alignment:
Q  49 aaataaatttggttggtgtgaaagttcaaaccaaaaataaagcaatccaagcttctgttgggcatgaattcgtagatcaacatcttttcatcttgttgaa 148  Q
    |||| ||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||    
T  5501973 aaattaatttcgttggtgagaaagttcaaaccaaaaataaagtaatccaagcttctgttggccatgaattcatagatcaacaacttttcatcttgttgaa 5502072  T
Q  149 tagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttccttgtcccgatgttttaga 248  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||    
T  5502073 tagaacaaccaagaagtttaacaagattacggtgttgaagtgttgccatcaagtttacttcatttttgaactcctcggttccttgtgccgatgttttaga 5502172  T
Q  249 aagcctcttaacagcaatctcttggccgtctacca 283  Q
    |||||| ||||||||||||||||||||||||||||    
T  5502173 aagccttttaacagcaatctcttggccgtctacca 5502207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 49 - 295
Target Start/End: Original strand, 5489124 - 5489370
Alignment:
Q  49 aaataaatttggttggtgtgaaagttcaaaccaaaaataaagcaatccaagcttctgttgggcatgaattcgtagatcaacatcttttcatcttgttgaa 148  Q
    |||| ||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||| |||||| |||||| |||    
T  5489124 aaattaatttcgttggtgagaaagttcaaaccaaaaataaagtaatccaagcttctgttggccatgaattcatagatcaacaacttttcttcttgtcgaa 5489223  T
Q  149 tagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttccttgtcccgatgttttaga 248  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||    
T  5489224 tagaacaaccaagaagttttacaagattacggtgttgaagcgttgccatcaagtttacttcatttttgaactcctcggttccttgtgccgatgttttaga 5489323  T
Q  249 aagcctcttaacagcaatctcttggccgtctaccagtacggcctagt 295  Q
    |||||||||||||||||||||||||||||| |||| |||| ||||||    
T  5489324 aagcctcttaacagcaatctcttggccgtcaaccattacgccctagt 5489370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 49 - 283
Target Start/End: Original strand, 5524841 - 5525075
Alignment:
Q  49 aaataaatttggttggtgtgaaagttcaaaccaaaaataaagcaatccaagcttctgttgggcatgaattcgtagatcaacatcttttcatcttgttgaa 148  Q
    |||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||    
T  5524841 aaattaatttggttggtgagaaagttcaaaccaaaaataaagtaatccaagcttctattgggcatgaattcgtagatcaacaacttttcatcttgtcgaa 5524940  T
Q  149 tagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttccttgtcccgatgttttaga 248  Q
    ||||||| || ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||  |||||||||||     
T  5524941 tagaacagccgagaagttttactagattacggtgttgaagtgttgccatcatctttacttcatttttgaactcctcggatccttgtatcgatgttttagc 5525040  T
Q  249 aagcctcttaacagcaatctcttggccgtctacca 283  Q
     |||||||||||||||||||||||||| |||||||    
T  5525041 tagcctcttaacagcaatctcttggccatctacca 5525075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 5855192 - 5854931
Alignment:
Q  18 aactacattttgacaagagaaaaattgagataaataaatttggttggtgtgaaagttcaaaccaaaaataaagcaatccaagcttctgttgggcatgaat 117  Q
    ||||||||| || |||||| |||| |||||  ||||| |||||||||||||||||||||||||||||||||||               || |||||||||    
T  5855192 aactacattatggcaagagtaaaactgagaacaataa-tttggttggtgtgaaagttcaaaccaaaaataaag---------------ttcggcatgaat 5855109  T
Q  118 tcgtagatcaacatcttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttga 217  Q
    | ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| |||||||||||||    
T  5855108 tggtagatcaacaacttttcatcttggtgaatagaacaaccaagaagttttacaagatttctgtgctgaagtgttgccatcaacttcacttcatttttga 5855009  T
Q  218 actcctcagttccttgtcccgatgttttagaaagcctcttaacagcaatctcttggccgtctaccagtacggcctagt 295  Q
    ||||||| ||||||||||| || |||||||| ||||||||||||||||||||| |||| |||| || |||| ||||||    
T  5855008 actcctcggttccttgtcctgaggttttagagagcctcttaacagcaatctctcggccatctaacattacgccctagt 5854931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 189
Target Start/End: Complemental strand, 1107361 - 1107249
Alignment:
Q  77 aaccaaaaataaagcaatccaagcttctgttgggcatgaattcgtagatcaacatcttttcatcttgttgaatagaacaaccaagaagttttacaagatt 176  Q
    ||||||||| |||  |||| ||||||||||| |||||  |||| ||||| | ||| || || |||  ||||||| ||||||||||||  || ||||||||    
T  1107361 aaccaaaaagaaatgaatctaagcttctgttcggcatatattcatagataagcattttctcttctccttgaatacaacaaccaagaaccttgacaagatt 1107262  T
Q  177 acggtgttgaagt 189  Q
     ||||||||||||    
T  1107261 tcggtgttgaagt 1107249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 266
Target Start/End: Complemental strand, 3120969 - 3120899
Alignment:
Q  196 atcaactttacttcatttttgaactcctcagttccttgtcccgatgttttagaaagcctcttaacagcaat 266  Q
    |||||| |||||||||| ||||| ||||||   |||||  |||||||||| |||||||| |||||||||||    
T  3120969 atcaacattacttcattcttgaattcctcaacaccttgaaccgatgttttcgaaagccttttaacagcaat 3120899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 25810495 - 25810215
Alignment:
Q  18 aactacattttgacaagagaaaaattgagataaataaatttggttggtgtgaaagttcaaaccaaaaataaagcaatccaagcttctgttgggcatgaat 117  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  25810495 aactacatttcggcaagagaaaaattgagataaataaatttggttggtgtgaaagttcaaaccaaaaataaagtaatccaagcttctgttgggcatgaat 25810396  T
Q  118 tcgtagatcaacatcttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttga 217  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25810395 tcttagatcaacatcttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttga 25810296  T
Q  218 actcctcagttccttgtcccgatgttttagaaagcctcttaacagcaatctcttggccgtctaccagtacggcctagtcat 298  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  25810295 actcctcagttccttgtcctgatgttttagaaagcctcttaacagcaatctcttggccgtctaccattacgtcctagtcat 25810215  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 223
Target Start/End: Original strand, 3979330 - 3979476
Alignment:
Q  77 aaccaaaaataaagcaatccaagcttctgttgggcatgaattcgtagatcaacatcttttcatcttgttgaatagaacaaccaagaagttttacaagatt 176  Q
    ||||||||| |||| | ||||||||| ||||||||||| |||| ||||||| |||  ||||  ||  || |||  | || ||||||||||| ||||||||    
T  3979330 aaccaaaaacaaagtagtccaagcttttgttgggcatgtattcatagatcagcattgtttctcctccttcaatgcagcatccaagaagtttgacaagatt 3979429  T
Q  177 acggtgttgaagtgttgccatcaactttacttcatttttgaactcct 223  Q
    ||||||||||||| | || ||||||    ||||||||||||| ||||    
T  3979430 acggtgttgaagtttggcaatcaacgccgcttcatttttgaattcct 3979476  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 75 - 224
Target Start/End: Complemental strand, 23392984 - 23392835
Alignment:
Q  75 caaaccaaaaataaagcaatccaagcttctgttgggcatgaattcgtagatcaacatcttttcatcttgttgaatagaacaaccaagaagttttacaaga 174  Q
    ||||||||| || ||| | || |||||| ||||||||||| |||| || ||||| | | |||| ||||  |||||  | ||||||||||| || ||||||    
T  23392984 caaaccaaagatgaagtagtctaagcttttgttgggcatgtattcatatatcaataacatttcctctttatgaatgcagcaaccaagaagcttcacaaga 23392885  T
Q  175 ttacggtgttgaagtgttgccatcaactttacttcatttttgaactcctc 224  Q
    ||||||||||||||| | || ||||||   ||||||||||| ||||||||    
T  23392884 ttacggtgttgaagtttcgcaatcaacacaacttcatttttaaactcctc 23392835  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 23285660 - 23285730
Alignment:
Q  154 caaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctc 224  Q
    ||||||||||| || ||||||||||||||||||||| |||| ||||||   ||||||||||| ||||||||    
T  23285660 caaccaagaagcttcacaagattacggtgttgaagttttgcaatcaacacaacttcatttttaaactcctc 23285730  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 23341769 - 23341887
Alignment:
Q  106 ttgggcatgaattcgtagatcaacatcttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaacttta 205  Q
    ||||||||| |||| ||||||||||  ||||| |||   |||||| ||||||| ||||| || |||||||||||||| |||||  |||| ||||||   |    
T  23341769 ttgggcatgtattcatagatcaacaatttttcctctctgtgaatacaacaaccgagaagcttcacaagattacggtgctgaagctttgcaatcaacaaaa 23341868  T
Q  206 cttcatttttgaactcctc 224  Q
    |||||||||| || |||||    
T  23341869 cttcatttttaaattcctc 23341887  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 224
Target Start/End: Complemental strand, 23385365 - 23385247
Alignment:
Q  106 ttgggcatgaattcgtagatcaacatcttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaacttta 205  Q
    ||||||||| |||| ||||||||||  ||||| |||   |||||| ||||||| ||||| || |||||||||||||| |||||  |||| ||||||   |    
T  23385365 ttgggcatgtattcatagatcaacaatttttcctctctgtgaatacaacaaccgagaagcttcacaagattacggtgctgaagctttgcaatcaacaaaa 23385266  T
Q  206 cttcatttttgaactcctc 224  Q
    |||||||||| || |||||    
T  23385265 cttcatttttaaattcctc 23385247  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 19398767 - 19398702
Alignment:
Q  207 ttcatttttgaactcctcagttccttgtcccgatgttttagaaagcctcttaacagcaatctcttg 272  Q
    |||||||||||| ||| || |||||||||| |||||||| |||||||| || |||||||| |||||    
T  19398767 ttcatttttgaattccacaattccttgtccagatgttttcgaaagcctttttacagcaatttcttg 19398702  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 19415123 - 19415058
Alignment:
Q  207 ttcatttttgaactcctcagttccttgtcccgatgttttagaaagcctcttaacagcaatctcttg 272  Q
    |||||||||||| ||| || |||||||||| |||||||| |||||||| || |||||||| |||||    
T  19415123 ttcatttttgaattccacaattccttgtccagatgttttcgaaagcctttttacagcaatttcttg 19415058  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 189
Target Start/End: Original strand, 4120878 - 4120915
Alignment:
Q  152 aacaaccaagaagttttacaagattacggtgttgaagt 189  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  4120878 aacaaccaagaagtcttacaagattacgatgttgaagt 4120915  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 23189454 - 23189382
Alignment:
Q  69 aaagttcaaaccaaaaataaagcaatccaagcttctgttgggcatgaattcgtagatcaacatcttttcatct 141  Q
    ||||| |||||| || | ||| |||||||||||| | |||||||||||||| ||||| | ||| |||||||||    
T  23189454 aaagtacaaaccgaagagaaaacaatccaagcttttattgggcatgaattcatagataagcattttttcatct 23189382  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 188
Target Start/End: Complemental strand, 20279205 - 20279110
Alignment:
Q  93 atccaagcttctgttgggcatgaattcgtagatcaacatcttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaag 188  Q
    |||||| ||| |||| |||||| | || || |||||||||||||||||   || |||| |||||||||||||||| |||||||| |||||||||||    
T  20279205 atccaaacttttgtttggcatgtactcatacatcaacatcttttcatcaccttcaatacaacaaccaagaagtttaacaagattgcggtgttgaag 20279110  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 188
Target Start/End: Original strand, 20062950 - 20063045
Alignment:
Q  93 atccaagcttctgttgggcatgaattcgtagatcaacatcttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaag 188  Q
    |||||| ||| |||| |||||| | || || |||||||||||||||||    | |||| |||| ||||||||| ||||||||||||||||||||||    
T  20062950 atccaaacttttgtttggcatgtactcatacatcaacatcttttcatcaccgtcaatacaacagccaagaagtcttacaagattacggtgttgaag 20063045  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 188
Target Start/End: Original strand, 20168505 - 20168600
Alignment:
Q  93 atccaagcttctgttgggcatgaattcgtagatcaacatcttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaag 188  Q
    |||||| ||||||||  ||||| | || || |||||||||||||||||   || |||| | ||||||| |||| |||||||||| |||||||||||    
T  20168505 atccaaacttctgtttagcatgtactcatacatcaacatcttttcatcgccttcaatacagcaaccaacaagtcttacaagattgcggtgttgaag 20168600  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 188
Target Start/End: Complemental strand, 20231225 - 20231129
Alignment:
Q  92 aatccaagcttctgttgggcatgaattcgtagatcaacatcttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaag 188  Q
    ||||||| ||| |||| |||||| |||| || |||||||||||||||||   || || | |||| |||| |||| ||||||| || |||||||||||    
T  20231225 aatccaaacttttgtttggcatgtattcatacatcaacatcttttcatcaccttcaacacaacagccaataagtcttacaaggttgcggtgttgaag 20231129  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 20263648 - 20263584
Alignment:
Q  124 atcaacatcttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaag 188  Q
    |||||||||||||||||   || || | |||| |||| |||| ||||||||||||||||||||||    
T  20263648 atcaacatcttttcatcaccttcaacacaacagccaataagtcttacaagattacggtgttgaag 20263584  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 20283751 - 20283687
Alignment:
Q  124 atcaacatcttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaag 188  Q
    ||||||||||||||||||  || || | |||| |||| |||| |||||||||| |||||||||||    
T  20283751 atcaacatcttttcatctccttcaacacaacagccaaaaagtcttacaagattgcggtgttgaag 20283687  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 34328599 - 34328536
Alignment:
Q  152 aacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcattttt 215  Q
    ||||||||||||| ||||||||||| |||||||||||| | || ||||| |||||||| |||||    
T  34328599 aacaaccaagaagctttacaagatttcggtgttgaagtttcgcaatcaattttacttcgttttt 34328536  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 31732753 - 31732684
Alignment:
Q  152 aacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactc 221  Q
    ||||||| || || ||||| ||||| |||||||||||| |||| || | ||||||||||||| |||||||    
T  31732753 aacaacctagcagctttactagatttcggtgttgaagttttgcaattagctttacttcatttatgaactc 31732684  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 31745654 - 31745585
Alignment:
Q  152 aacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactc 221  Q
    ||||||| || || ||||| ||||| |||||||||||| |||| || | ||||||||||||| |||||||    
T  31745654 aacaacctagcagctttactagatttcggtgttgaagttttgcaattagctttacttcatttatgaactc 31745585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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