View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6030_low_7 (Length: 286)
Name: NF6030_low_7
Description: NF6030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6030_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 43408946 - 43409216
Alignment:
| Q |
1 |
ggaggaggaaagggaagtagtggtgcatcaggttgtggtgtttcaactatgagttgctgcatatcaacggttgattcagcttgttatgttggtgacatgg |
100 |
Q |
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| T |
43408946 |
ggaggaggaaagggaagtagtggtgcatcaggttgtggtgtttcaactatgagttgctgcatatcaacggttgattcagcttgttatgttggtgacatgg |
43409045 |
T |
|
| Q |
101 |
atgtattgggattccaagaagcgtgcagtgagtatcacctttttaatggacaaggaatagtaggaacagccttcacaacaaccaaaccttgttttgctat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43409046 |
atgtattgggattccaagaagcgtgcagtgagtatcacctttttaatggacaaggaatagtaggaacagccttcacaacaaccaaaccttgttttgctat |
43409145 |
T |
|
| Q |
201 |
tgatattactgccttcagcaaatctgaatatccacttgctcaccatgccaacatgtttggcttacacgctg |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43409146 |
tgatattactgccttcagcaaatctgaatatccacttgctcaccatgccaacatgtttggcttacacgctg |
43409216 |
T |
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