View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6031_high_2 (Length: 689)

Name: NF6031_high_2
Description: NF6031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6031_high_2
NF6031_high_2
[»] chr4 (20 HSPs)
chr4 (12-645)||(39506844-39507482)
chr4 (282-336)||(3144652-3144706)
chr4 (282-336)||(20743278-20743332)
chr4 (631-673)||(39507486-39507528)
chr4 (262-332)||(49659502-49659573)
chr4 (222-336)||(24343512-24343632)
chr4 (290-383)||(34515882-34515975)
chr4 (222-288)||(53381530-53381596)
chr4 (295-335)||(7424676-7424716)
chr4 (290-334)||(31243556-31243600)
chr4 (222-273)||(19482747-19482798)
chr4 (221-288)||(23292925-23292991)
chr4 (235-293)||(3947714-3947771)
chr4 (266-336)||(16402195-16402265)
chr4 (282-336)||(32910556-32910610)
chr4 (222-288)||(34306744-34306809)
chr4 (220-265)||(25950470-25950515)
chr4 (289-334)||(50848310-50848355)
chr4 (284-335)||(30520438-30520490)
chr4 (282-334)||(53968553-53968605)
[»] chr8 (14 HSPs)
chr8 (222-334)||(39820436-39820547)
chr8 (242-347)||(1676706-1676811)
chr8 (279-336)||(35431137-35431194)
chr8 (234-333)||(31580079-31580178)
chr8 (285-335)||(9936820-9936870)
chr8 (284-334)||(13845241-13845291)
chr8 (222-336)||(30067968-30068082)
chr8 (235-333)||(12559053-12559157)
chr8 (294-331)||(26507450-26507487)
chr8 (235-294)||(44067574-44067633)
chr8 (282-336)||(13009493-13009547)
chr8 (222-272)||(29510233-29510283)
chr8 (290-334)||(28883886-28883930)
chr8 (282-334)||(40063958-40064010)
[»] chr5 (17 HSPs)
chr5 (218-342)||(7997102-7997226)
chr5 (282-334)||(43554528-43554580)
chr5 (282-332)||(39695999-39696049)
chr5 (222-335)||(32630675-32630788)
chr5 (289-334)||(19293430-19293475)
chr5 (284-352)||(25863193-25863261)
chr5 (289-332)||(29365015-29365058)
chr5 (222-272)||(2436980-2437030)
chr5 (235-332)||(26312778-26312875)
chr5 (248-335)||(2577145-2577233)
chr5 (288-333)||(15410454-15410499)
chr5 (299-336)||(18162060-18162097)
chr5 (284-333)||(31264446-31264495)
chr5 (284-336)||(18607099-18607151)
chr5 (291-335)||(21577117-21577161)
chr5 (222-270)||(38464313-38464361)
chr5 (292-336)||(42469226-42469270)
[»] chr3 (22 HSPs)
chr3 (226-342)||(25651969-25652091)
chr3 (236-320)||(12100290-12100374)
chr3 (261-336)||(15864838-15864913)
chr3 (235-336)||(24204994-24205095)
chr3 (222-335)||(25074795-25074914)
chr3 (284-334)||(25892467-25892517)
chr3 (222-334)||(3730108-3730217)
chr3 (222-333)||(55401083-55401194)
chr3 (290-333)||(1830351-1830394)
chr3 (282-344)||(27903629-27903691)
chr3 (239-336)||(25365467-25365564)
chr3 (282-342)||(12704657-12704717)
chr3 (222-273)||(40052380-40052431)
chr3 (222-285)||(52369843-52369906)
chr3 (282-336)||(52369780-52369834)
chr3 (237-333)||(10954960-10955056)
chr3 (282-335)||(14223853-14223906)
chr3 (290-335)||(20691325-20691370)
chr3 (239-335)||(21149073-21149169)
chr3 (290-335)||(40150579-40150624)
chr3 (222-333)||(40993275-40993387)
chr3 (222-321)||(7171521-7171620)
[»] chr7 (16 HSPs)
chr7 (235-335)||(12278841-12278941)
chr7 (261-336)||(23751905-23751980)
chr7 (282-334)||(29812664-29812716)
chr7 (282-336)||(23930224-23930278)
chr7 (220-331)||(7133210-7133327)
chr7 (221-286)||(17852056-17852120)
chr7 (286-335)||(32855360-32855409)
chr7 (222-294)||(5409771-5409842)
chr7 (222-333)||(15680817-15680928)
chr7 (285-336)||(4017797-4017848)
chr7 (285-336)||(22683758-22683809)
chr7 (220-294)||(32093952-32094026)
chr7 (223-270)||(32308202-32308249)
chr7 (282-336)||(17780084-17780138)
chr7 (235-288)||(32287416-32287468)
chr7 (222-333)||(598216-598327)
[»] chr1 (18 HSPs)
chr1 (222-346)||(22794018-22794142)
chr1 (282-336)||(42004947-42005001)
chr1 (284-343)||(6936402-6936461)
chr1 (283-336)||(6573994-6574047)
chr1 (237-335)||(19637774-19637872)
chr1 (219-333)||(46348320-46348434)
chr1 (270-335)||(29415754-29415819)
chr1 (235-294)||(1486657-1486715)
chr1 (222-273)||(15323236-15323287)
chr1 (278-335)||(7988446-7988504)
chr1 (222-311)||(9690213-9690303)
chr1 (235-273)||(18190061-18190099)
chr1 (220-333)||(22515825-22515938)
chr1 (234-275)||(23219615-23219656)
chr1 (290-333)||(12040690-12040734)
chr1 (299-331)||(28676183-28676215)
chr1 (290-334)||(39101190-39101234)
chr1 (285-336)||(48415728-48415780)
[»] chr6 (20 HSPs)
chr6 (282-336)||(6389748-6389802)
chr6 (282-335)||(19602181-19602234)
chr6 (282-336)||(34446570-34446624)
chr6 (282-335)||(17168463-17168516)
chr6 (248-336)||(12235485-12235573)
chr6 (222-273)||(8776908-8776959)
chr6 (290-332)||(2153895-2153937)
chr6 (281-346)||(12086344-12086409)
chr6 (222-333)||(34595142-34595253)
chr6 (221-288)||(28152152-28152218)
chr6 (290-333)||(30781302-30781345)
chr6 (290-336)||(6299517-6299563)
chr6 (290-336)||(6306327-6306373)
chr6 (222-331)||(13364645-13364754)
chr6 (282-336)||(26247431-26247485)
chr6 (293-346)||(7625117-7625170)
chr6 (288-328)||(4420185-4420225)
chr6 (235-271)||(8389421-8389457)
chr6 (235-271)||(31959220-31959256)
chr6 (290-334)||(34895042-34895086)
[»] chr2 (19 HSPs)
chr2 (278-336)||(12748689-12748747)
chr2 (282-335)||(23354652-23354705)
chr2 (282-334)||(25544488-25544540)
chr2 (235-335)||(24011042-24011148)
chr2 (220-333)||(18840951-18841064)
chr2 (222-335)||(34006930-34007044)
chr2 (290-335)||(23355003-23355048)
chr2 (296-346)||(8817470-8817520)
chr2 (285-335)||(10535762-10535812)
chr2 (296-334)||(22085011-22085049)
chr2 (222-288)||(27084323-27084388)
chr2 (282-336)||(30563414-30563468)
chr2 (222-288)||(37419808-37419873)
chr2 (285-335)||(38919212-38919262)
chr2 (282-331)||(11308004-11308053)
chr2 (282-335)||(19573984-19574037)
chr2 (290-334)||(4229416-4229460)
chr2 (222-270)||(19980746-19980794)
chr2 (295-335)||(31026701-31026741)
[»] scaffold0199 (1 HSPs)
scaffold0199 (242-347)||(1943-2048)
[»] scaffold0598 (1 HSPs)
scaffold0598 (282-336)||(8053-8107)
[»] scaffold0778 (1 HSPs)
scaffold0778 (294-335)||(4412-4453)
[»] scaffold0652 (1 HSPs)
scaffold0652 (235-272)||(415-452)
[»] scaffold0053 (1 HSPs)
scaffold0053 (237-333)||(8806-8902)
[»] scaffold0049 (1 HSPs)
scaffold0049 (290-331)||(56932-56973)
[»] scaffold0361 (1 HSPs)
scaffold0361 (222-333)||(14538-14646)


Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 12 - 645
Target Start/End: Original strand, 39506844 - 39507482
Alignment:
Q  12 atgaatctatgcccggttcatacatgtttatgaacatgtggtgatgtgattnnnnnnnnnnnnncactcaaattaatgattctaagtcatggaataaaaa 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||| |||||||||||||||||||||||||    
T  39506844 atgaatctatgcccggttcatacatgtttatgaacatgtggtgatgtgattaaaaatgaaaaaacactcaaatttatgattctaagtcatggaataaaaa 39506943  T
Q  112 acgaatgtgnnnnnnnacatgtgtgacaaattata-------gtaacaaggtgattcaagaggtctcttgttgtccaannnnnnnatgaatcttagtgtc 204  Q
    |||||||||       |||||||||||||||||||       ||||||||||||||||||||||||  ||||||||||       |||||||||||||||    
T  39506944 acgaatgtgtttttttacatgtgtgacaaattatataaaccagtaacaaggtgattcaagaggtct--tgttgtccaatttttttatgaatcttagtgtc 39507041  T
Q  205 ttaattatatcaaaaaactatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattaca 304  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39507042 ttaattaaatcaaaaaactatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacataacacctatgattaca 39507141  T
Q  305 cttaattatatcattttcttaaattattatccttgttgacgtatcgatattcaggtcgtgtctaatgtttgtgtctgtggttcatagtcaacaaacaacg 404  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  39507142 cttaattatatcattttcataaattattatccttattgacgtatcggtattcaagtcgtgtctaatgtttgtgtatgtggttcatagtcaacaaacaacg 39507241  T
Q  405 ttaagatttatatcacacatatatccctgagtaagcagtaacaataaactagacaggatcatgataatgatactatatggtttgatcaattgaagtaggt 504  Q
    ||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39507242 ttaagatttatatcaaacatatataccagagtaagcagtaacaataaactagacaggatcatgataatgatactatatggtttgatcaattgaagtaggt 39507341  T
Q  505 gccaccatcacgttaaagtaacaagacnnnnnnngttttgttctggtaacaaggctttaatatgaaataactttaatccacctatataaagaaaatttgt 604  Q
    |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  39507342 gccaccatcacgttaaagtaacaagactttttttgttttgttctggtaacaaggctttaatatgaaataattttaatccacctatataaagaaaatttga 39507441  T
Q  605 gctgaaccctgagtttgtcagcaaaaaaccggattagtaca 645  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  39507442 gctgaaccctgagtttgtcagcaaaaaaccggattagtaca 39507482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 282 - 336
Target Start/End: Original strand, 3144652 - 3144706
Alignment:
Q  282 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 336  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||    
T  3144652 ccgacacgacacctatgattacactaaattatatcattttctgaaattattatcc 3144706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 282 - 336
Target Start/End: Original strand, 20743278 - 20743332
Alignment:
Q  282 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 336  Q
    ||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||    
T  20743278 ccgacacaacacctatgattacactgaattatgtcattttctcaaattattatcc 20743332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 631 - 673
Target Start/End: Original strand, 39507486 - 39507528
Alignment:
Q  631 aaccggattagtacatgattgattgattaattaaggtatatat 673  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  39507486 aaccggattagtacatgattgattgattaattaaggtatatat 39507528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 262 - 332
Target Start/End: Original strand, 49659502 - 49659573
Alignment:
Q  262 tgtcggacacgtatcagtgtccgacac-aacacctatgattacacttaattatatcattttcttaaattatt 332  Q
    |||||| ||||| || ||||||||||| || ||||||||||||||| |||||||||||||||| ||||||||    
T  49659502 tgtcgggcacgtgtcggtgtccgacaccaaaacctatgattacactaaattatatcattttctcaaattatt 49659573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 222 - 336
Target Start/End: Complemental strand, 24343632 - 24343512
Alignment:
Q  222 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtc------cgacacaacacctatgattacacttaattatat 315  Q
    ||||||||||   ||||||||| ||||||| ||||| ||||||||||||||  || |||||      |||||| |||||||| |||||||| |||||| |    
T  24343632 ctatgaagcacggacactcctcagaataggcgtgtcccggtgtcggacacgcgtcggtgtcggacaccgacacgacacctataattacactgaattatgt 24343533  T
Q  316 cattttcttaaattattatcc 336  Q
     ||||||| ||||||||||||    
T  24343532 aattttctcaaattattatcc 24343512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 290 - 383
Target Start/End: Original strand, 34515882 - 34515975
Alignment:
Q  290 acacctatgattacacttaattatatcattttcttaaattattatccttgttgacgtatcgatattcaggtcgtgtctaatgtttgtgtctgtg 383  Q
    ||||||||| ||||||| |||||| |||||||||| ||||||||||| ||| ||||| ||  | |||  || |||||| |||||||||||||||    
T  34515882 acacctatgtttacactgaattatgtcattttcttgaattattatccgtgtcgacgtgtcagtgttcgtgttgtgtctgatgtttgtgtctgtg 34515975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 53381530 - 53381596
Alignment:
Q  222 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac 288  Q
    ||||||||||   |||||||||||| |||||||||| |||||||||| |||  ||||||||||||||    
T  53381530 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggatacgcgtcagtgtccgacac 53381596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 295 - 335
Target Start/End: Complemental strand, 7424716 - 7424676
Alignment:
Q  295 tatgattacacttaattatatcattttcttaaattattatc 335  Q
    |||||||||||| |||||||| |||||||||||||||||||    
T  7424716 tatgattacactcaattatattattttcttaaattattatc 7424676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 290 - 334
Target Start/End: Original strand, 31243556 - 31243600
Alignment:
Q  290 acacctatgattacacttaattatatcattttcttaaattattat 334  Q
    ||||||||||||||||| |||||| ||||||||| ||||||||||    
T  31243556 acacctatgattacactgaattatgtcattttctcaaattattat 31243600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 273
Target Start/End: Complemental strand, 19482798 - 19482747
Alignment:
Q  222 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgt 273  Q
    ||||||||||  ||||||||||||| |||||||||| | |||||||||||||    
T  19482798 ctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgt 19482747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 288
Target Start/End: Original strand, 23292925 - 23292991
Alignment:
Q  221 actatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac 288  Q
    |||||||||||   |||||||||||| |||| ||||| ||||||||||||||| || |||||||||||    
T  23292925 actatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtccgacac 23292991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 235 - 293
Target Start/End: Original strand, 3947714 - 3947771
Alignment:
Q  235 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacac 293  Q
    |||||||||||| ||||||||||  |||||||||||||| || ||||||||||| ||||    
T  3947714 acactcctcggattaggtgtgtcctggtgtcggacacgtgtc-gtgtccgacacgacac 3947771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 266 - 336
Target Start/End: Original strand, 16402195 - 16402265
Alignment:
Q  266 ggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 336  Q
    |||||||| |||||||||||||| ||| |||| ||||||||  || || | ||||||| ||||||||||||    
T  16402195 ggacacgtgtcagtgtccgacacgacagctataattacactgtatcatgttattttctcaaattattatcc 16402265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 282 - 336
Target Start/End: Complemental strand, 32910610 - 32910556
Alignment:
Q  282 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 336  Q
    |||||| |||||| || |||||||| |||||| ||||||||| ||||||||||||    
T  32910610 ccgacataacacccataattacactgaattatgtcattttctcaaattattatcc 32910556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 34306744 - 34306809
Alignment:
Q  222 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac 288  Q
    ||||||||||  |||| ||||| || |||| ||||||||||||||||||||| || |||||||||||    
T  34306744 ctatgaagcacgaacattcctcagattaggcgtgtctcggtgtcggacacgtgtc-gtgtccgacac 34306809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 265
Target Start/End: Original strand, 25950470 - 25950515
Alignment:
Q  220 aactatgaagcagtaacactcctcggaataggtgtgtctcggtgtc 265  Q
    ||||||||||||   |||||||||||| ||||||||||||||||||    
T  25950470 aactatgaagcatggacactcctcggattaggtgtgtctcggtgtc 25950515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 334
Target Start/End: Original strand, 50848310 - 50848355
Alignment:
Q  289 aacacctatgattacacttaattatatcattttcttaaattattat 334  Q
    |||||||| ||||||||| |||||||||||||| | ||||||||||    
T  50848310 aacacctacgattacactgaattatatcattttttcaaattattat 50848355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 284 - 335
Target Start/End: Original strand, 30520438 - 30520490
Alignment:
Q  284 gacacaacacctatgattacacttaattatatcattttctt-aaattattatc 335  Q
    ||||| ||||||||||||||||| |||||| ||||||| || |||||||||||    
T  30520438 gacactacacctatgattacactgaattatgtcatttttttcaaattattatc 30520490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 282 - 334
Target Start/End: Complemental strand, 53968605 - 53968553
Alignment:
Q  282 ccgacacaacacctatgattacacttaattatatcattttcttaaattattat 334  Q
    ||||||| ||| |||||||  |||| |||||| ||||||||||||||||||||    
T  53968605 ccgacacgacatctatgatatcactgaattatgtcattttcttaaattattat 53968553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 5e-21; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 222 - 334
Target Start/End: Complemental strand, 39820547 - 39820436
Alignment:
Q  222 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcatttt 321  Q
    ||||||||||   ||||| |||||| |||| ||||| || |||||||||||  || ||||||||||| ||||||||||||||||| ||||||||||||||    
T  39820547 ctatgaagcacggacacttctcggattaggcgtgtcccg-tgtcggacacgcgtcggtgtccgacacgacacctatgattacactaaattatatcatttt 39820449  T
Q  322 cttaaattattat 334  Q
    || ||||||||||    
T  39820448 ctcaaattattat 39820436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 242 - 347
Target Start/End: Complemental strand, 1676811 - 1676706
Alignment:
Q  242 tcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatccttgtt 341  Q
    ||||| |||||||||   |||||| |||| || || ||||||||||| ||||||||||||||||| || ||| ||||||||  |||||||||||| |||     
T  1676811 tcggattaggtgtgtgcaggtgtcagacatgtgtcggtgtccgacacgacacctatgattacactaaaatatgtcattttcacaaattattatccgtgtc 1676712  T
Q  342 gacgta 347  Q
    ||||||    
T  1676711 gacgta 1676706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 279 - 336
Target Start/End: Original strand, 35431137 - 35431194
Alignment:
Q  279 tgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 336  Q
    |||||||||| ||||||||||||||||| || ||| ||||||||| ||||||||||||    
T  35431137 tgtccgacacgacacctatgattacactaaaatatgtcattttctcaaattattatcc 35431194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 234 - 333
Target Start/End: Original strand, 31580079 - 31580178
Alignment:
Q  234 aacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattttcttaaattatt 332  Q
    ||||| ||||||| ||||||||| ||||||||| ||| || || | |||||||| | |||||||| |||||||| |||||| | ||||||||||||||||    
T  31580079 aacacccctcggattaggtgtgtttcggtgtcgaacatgtgtc-gcgtccgacatcgacacctataattacactcaattatgtgattttcttaaattatt 31580177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 285 - 335
Target Start/End: Complemental strand, 9936870 - 9936820
Alignment:
Q  285 acacaacacctatgattacacttaattatatcattttcttaaattattatc 335  Q
    ||||||||| |||||||| | | ||||||||||||||||||||||||||||    
T  9936870 acacaacacatatgattatattgaattatatcattttcttaaattattatc 9936820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 13845291 - 13845241
Alignment:
Q  284 gacacaacacctatgattacacttaattatatcattttcttaaattattat 334  Q
    ||||| |||||||||||||| || |||||||||||||||| ||||||||||    
T  13845291 gacacgacacctatgattactctaaattatatcattttctcaaattattat 13845241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 222 - 336
Target Start/End: Original strand, 30067968 - 30068082
Alignment:
Q  222 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcatttt 321  Q
    ||||||||||   |||||| ||||| |||||||||| | |||||||||||   || || |||||| |  |||||| ||||| ||| |||||| |||||||    
T  30067968 ctatgaagcacggacactcatcggattaggtgtgtcccagtgtcggacacacgtcggtatccgactcggcacctacgattatactgaattatgtcatttt 30068067  T
Q  322 cttaaattattatcc 336  Q
    || ||||||||||||    
T  30068068 ctcaaattattatcc 30068082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 235 - 333
Target Start/End: Original strand, 12559053 - 12559157
Alignment:
Q  235 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacc------tatgattacacttaattatatcattttcttaaat 328  Q
    |||||||| ||| ||| |||||| || |||||||||||| || |||||||| |  |||||      |||||||||||| |||||||||||||||| ||||    
T  12559053 acactcctgggattagatgtgtcccgttgtcggacacgtgtcggtgtccgagatgacaccaatacatatgattacactgaattatatcattttctcaaat 12559152  T
Q  329 tatta 333  Q
    |||||    
T  12559153 tatta 12559157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 294 - 331
Target Start/End: Complemental strand, 26507487 - 26507450
Alignment:
Q  294 ctatgattacacttaattatatcattttcttaaattat 331  Q
    |||||||||||||||||||||| |||||||||||||||    
T  26507487 ctatgattacacttaattatattattttcttaaattat 26507450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 44067633 - 44067574
Alignment:
Q  235 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacc 294  Q
    |||||||||| | |||| |||||  ||||||||||||| ||||||||||||||| |||||    
T  44067633 acactcctcgaattaggcgtgtcctggtgtcggacacgcatcagtgtccgacacgacacc 44067574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 282 - 336
Target Start/End: Original strand, 13009493 - 13009547
Alignment:
Q  282 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 336  Q
    ||||||| |||| |||||||||||| ||||||||  |||||| ||||||||||||    
T  13009493 ccgacacgacacttatgattacactaaattatattgttttctcaaattattatcc 13009547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 29510233 - 29510283
Alignment:
Q  222 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacg 272  Q
    ||||||||||   |||||||||||| |||||||||| ||||||||||||||    
T  29510233 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacg 29510283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 290 - 334
Target Start/End: Original strand, 28883886 - 28883930
Alignment:
Q  290 acacctatgattacacttaattatatcattttcttaaattattat 334  Q
    |||||||||||| |||| |||||| ||||||||| ||||||||||    
T  28883886 acacctatgattccactgaattatgtcattttctcaaattattat 28883930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 282 - 334
Target Start/End: Complemental strand, 40064010 - 40063958
Alignment:
Q  282 ccgacacaacacctatgattacacttaattatatcattttcttaaattattat 334  Q
    ||||||| || |||||||||||| | |||||| ||||||||| ||||||||||    
T  40064010 ccgacacgacgcctatgattacaatgaattatgtcattttctcaaattattat 40063958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 5e-21; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 218 - 342
Target Start/End: Original strand, 7997102 - 7997226
Alignment:
Q  218 aaaactatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatca 317  Q
    ||||| ||||||||  |||||| |||| | ||||||||||  | |||||||||||  |||||||||||||| |||| ||| ||||||||  |||||||||    
T  7997102 aaaacaatgaagcacaaacacttctcgaattaggtgtgtcctgatgtcggacacgcgtcagtgtccgacacgacacttataattacactgtattatatca 7997201  T
Q  318 ttttcttaaattattatccttgttg 342  Q
    |||||| |||||||||||| |||||    
T  7997202 ttttctcaaattattatccgtgttg 7997226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 282 - 334
Target Start/End: Complemental strand, 43554580 - 43554528
Alignment:
Q  282 ccgacacaacacctatgattacacttaattatatcattttcttaaattattat 334  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||||||||||    
T  43554580 ccgacacgacacctatgattacactaaattatatcattttctcaaattattat 43554528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 282 - 332
Target Start/End: Original strand, 39695999 - 39696049
Alignment:
Q  282 ccgacacaacacctatgattacacttaattatatcattttcttaaattatt 332  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||||||||    
T  39695999 ccgacacgacacctatgattacactaaattatatcattttctcaaattatt 39696049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 222 - 335
Target Start/End: Original strand, 32630675 - 32630788
Alignment:
Q  222 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac-aacacctatgattacacttaattatatcattt 320  Q
    ||||||||||   |||||||||| | ||||||||||||  |||||||||||| || || ||||||||  |||| ||| |||||| | |||||||| ||||    
T  32630675 ctatgaagcatagacactcctcgaattaggtgtgtctcaatgtcggacacgtgtc-gtatccgacactgacacatataattacattgaattatataattt 32630773  T
Q  321 tcttaaattattatc 335  Q
    ||| |||||||||||    
T  32630774 tctcaaattattatc 32630788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 289 - 334
Target Start/End: Original strand, 19293430 - 19293475
Alignment:
Q  289 aacacctatgattacacttaattatatcattttcttaaattattat 334  Q
    ||||| ||||||||||||||||||| | ||||||||||||||||||    
T  19293430 aacacatatgattacacttaattatgttattttcttaaattattat 19293475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 284 - 352
Target Start/End: Complemental strand, 25863261 - 25863193
Alignment:
Q  284 gacacaacacctatgattacacttaattatatcattttcttaaattattatccttgttgacgtatcgat 352  Q
    ||||| |||| ||| |||||||| |||||||||||||||| |||||||||| | ||| ||||| |||||    
T  25863261 gacacgacacttataattacactgaattatatcattttctcaaattattatacatgtcgacgtgtcgat 25863193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 289 - 332
Target Start/End: Complemental strand, 29365058 - 29365015
Alignment:
Q  289 aacacctatgattacacttaattatatcattttcttaaattatt 332  Q
    ||||||| |||||||| ||||||||| |||||||||||||||||    
T  29365058 aacacctgtgattacatttaattataccattttcttaaattatt 29365015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 2437030 - 2436980
Alignment:
Q  222 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacg 272  Q
    ||||||||||  ||||||||||||| |||| |||||| |||||||||||||    
T  2437030 ctatgaagcacgaacactcctcggattaggcgtgtcttggtgtcggacacg 2436980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 235 - 332
Target Start/End: Complemental strand, 26312875 - 26312778
Alignment:
Q  235 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattttcttaaattatt 332  Q
    |||||||||||| ||||||||||  |||||| |||||||||| |||||||||| | | || ||| |||||||| |||||  | ||||||| ||||||||    
T  26312875 acactcctcggattaggtgtgtcctggtgtcagacacgtatc-gtgtccgacaccgatacatataattacactgaattaattgattttctcaaattatt 26312778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 335
Target Start/End: Original strand, 2577145 - 2577233
Alignment:
Q  248 taggtgtgtctcggtgtcggacacgtatcagtgtccgacac---aacacctatgattacacttaattatatcattttcttaaattattatc 335  Q
    |||||| |||| ||||||||||||  ||| || ||||||||   ||||  |||||||||||| |||||| ||||||||| |||||||||||    
T  2577145 taggtgagtcttggtgtcggacacacatcggtatccgacaccggaaca--tatgattacactaaattatgtcattttctcaaattattatc 2577233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 333
Target Start/End: Original strand, 15410454 - 15410499
Alignment:
Q  288 caacacctatgattacacttaattatatcattttcttaaattatta 333  Q
    |||||| |||||||||||| ||| |||| |||||||||||||||||    
T  15410454 caacacatatgattacactgaatcatataattttcttaaattatta 15410499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 336
Target Start/End: Complemental strand, 18162097 - 18162060
Alignment:
Q  299 attacacttaattatatcattttcttaaattattatcc 336  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  18162097 attacactgaattatgtcattttcttaaattattatcc 18162060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 31264495 - 31264446
Alignment:
Q  284 gacacaacacctatgattacacttaattatatcattttcttaaattatta 333  Q
    ||||| |||| |||||||||||| |||||| ||||||||| |||||||||    
T  31264495 gacacgacacttatgattacactgaattatgtcattttctcaaattatta 31264446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 284 - 336
Target Start/End: Original strand, 18607099 - 18607151
Alignment:
Q  284 gacacaacacctatgattacacttaattatatcattttcttaaattattatcc 336  Q
    ||||| ||||||||||||||| | |||||| | ||||||| ||||||||||||    
T  18607099 gacacgacacctatgattacattgaattatgttattttctcaaattattatcc 18607151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 21577117 - 21577161
Alignment:
Q  291 cacctatgattacacttaattatatcattttcttaaattattatc 335  Q
    ||||||| ||||||||||||||| | ||||||| |||||||||||    
T  21577117 cacctattattacacttaattatgttattttctcaaattattatc 21577161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 38464313 - 38464361
Alignment:
Q  222 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggaca 270  Q
    ||||||||||   |||||||||||| |||||||||| ||||||||||||    
T  38464313 ctatgaagcacagacactcctcggattaggtgtgtcccggtgtcggaca 38464361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 42469270 - 42469226
Alignment:
Q  292 acctatgattacacttaattatatcattttcttaaattattatcc 336  Q
    ||||||||||||||| || ||| ||||||||| ||||||||||||    
T  42469270 acctatgattacactaaaatatgtcattttctcaaattattatcc 42469226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 226 - 342
Target Start/End: Original strand, 25651969 - 25652091
Alignment:
Q  226 gaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtcc------gacacaacacctatgattacacttaattatatcatt 319  Q
    |||||| | |||||| ||||| ||||||||||||||||||| |||||| || ||||||      |||||||||||||| | |||||| ||||||||||||    
T  25651969 gaagcactgacactcttcggattaggtgtgtctcggtgtcgaacacgtgtcggtgtccaacactgacacaacacctataactacactgaattatatcatt 25652068  T
Q  320 ttcttaaattattatccttgttg 342  Q
    |||| |||||||||||| |||||    
T  25652069 ttctcaaattattatccgtgttg 25652091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 236 - 320
Target Start/End: Complemental strand, 12100374 - 12100290
Alignment:
Q  236 cactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattt 320  Q
    ||||||||||| |||||||||| ||||||||||||||  | |||||| ||||| |||||||| |||||||| |||||||||||||    
T  12100374 cactcctcggactaggtgtgtcccggtgtcggacacgcgttagtgtcagacacgacacctattattacactgaattatatcattt 12100290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 261 - 336
Target Start/End: Complemental strand, 15864913 - 15864838
Alignment:
Q  261 gtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 336  Q
    ||||| ||||||| || ||||||||||| ||||||||||||||||| |||||||||||||| | ||||||||||||    
T  15864913 gtgtcagacacgtgtcggtgtccgacacgacacctatgattacactaaattatatcattttttcaaattattatcc 15864838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 235 - 336
Target Start/End: Original strand, 24204994 - 24205095
Alignment:
Q  235 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattat 334  Q
    |||||||||| | |||| |||||  |||||||||||||  |||||||||||||| |||| ||| ||||||||  ||||| ||||||||| ||||||||||    
T  24204994 acactcctcgaattaggcgtgtcctggtgtcggacacgcgtcagtgtccgacacgacacttataattacactgtattatgtcattttctcaaattattat 24205093  T
Q  335 cc 336  Q
    ||    
T  24205094 cc 24205095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 222 - 335
Target Start/End: Complemental strand, 25074914 - 25074795
Alignment:
Q  222 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtc------cgacacaacacctatgattacacttaattatat 315  Q
    ||||||||||  ||||||||||||| |||||||||| | ||||||||||||  |  |||||      ||||||||| |||||||||||||| |||||| |    
T  25074914 ctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgcgttggtgtcagacaccgacacaacgcctatgattacactcaattatgt 25074815  T
Q  316 cattttcttaaattattatc 335  Q
    |||||||| |||||||||||    
T  25074814 cattttctcaaattattatc 25074795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 25892517 - 25892467
Alignment:
Q  284 gacacaacacctatgattacacttaattatatcattttcttaaattattat 334  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  25892517 gacacgacacctatgattacactgaattatatcattttcttaaattattat 25892467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 222 - 334
Target Start/End: Original strand, 3730108 - 3730217
Alignment:
Q  222 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcatttt 321  Q
    ||||||||||   |||||||||||| |||||||||| |||||   |||| | ||  ||||| ||||| ||||||||||||||||| |||||| ||||| |    
T  3730108 ctatgaagcatggacactcctcggattaggtgtgtcccggtg---gacatgcattggtgtcagacacgacacctatgattacactgaattatgtcattat 3730204  T
Q  322 cttaaattattat 334  Q
    || ||||||||||    
T  3730205 ctcaaattattat 3730217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 222 - 333
Target Start/End: Complemental strand, 55401194 - 55401083
Alignment:
Q  222 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattt 320  Q
    ||||||||||   |||||||||||| |||| ||||||||||||||||||||| || |||||||||| | |||| | | |||||||| |||||| | ||||    
T  55401194 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggacacgtgtc-gtgtccgacaccgacacttgtaattacactaaattatgtgattt 55401096  T
Q  321 tcttaaattatta 333  Q
    | | |||||||||    
T  55401095 tttcaaattatta 55401083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 290 - 333
Target Start/End: Complemental strand, 1830394 - 1830351
Alignment:
Q  290 acacctatgattacacttaattatatcattttcttaaattatta 333  Q
    ||||||||||||||||| |||||| |||||||||||||||||||    
T  1830394 acacctatgattacactgaattatgtcattttcttaaattatta 1830351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 282 - 344
Target Start/End: Complemental strand, 27903691 - 27903629
Alignment:
Q  282 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatccttgttgac 344  Q
    |||||||||||| |||||||||| | ||||||||| |||||| |||||||||||  |||||||    
T  27903691 ccgacacaacacttatgattacattaaattatatcgttttctcaaattattatctgtgttgac 27903629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 239 - 336
Target Start/End: Complemental strand, 25365564 - 25365467
Alignment:
Q  239 tcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 336  Q
    ||||| || |||| |||||  ||||||| ||||  ||| ||||||||||| |||| |||||||||||  |||||| |||| |||| ||||||||||||    
T  25365564 tcctcagattaggcgtgtcctggtgtcgaacacacatcggtgtccgacacgacacttatgattacaccgaattatgtcatattctcaaattattatcc 25365467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 282 - 342
Target Start/End: Original strand, 12704657 - 12704717
Alignment:
Q  282 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatccttgttg 342  Q
    ||||||| ||||||||||||||| | |||||| ||||||| | |||||||||||| |||||    
T  12704657 ccgacacgacacctatgattacattgaattatgtcattttttcaaattattatccgtgttg 12704717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 273
Target Start/End: Complemental strand, 40052431 - 40052380
Alignment:
Q  222 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgt 273  Q
    ||||||||||  ||||||||||||| |||| ||||| |||||||||||||||    
T  40052431 ctatgaagcacgaacactcctcggattaggcgtgtcccggtgtcggacacgt 40052380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 52369906 - 52369843
Alignment:
Q  222 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccga 285  Q
    ||||||||||   ||||||||||||||||||||||| |||||| |||||||  || ||||||||    
T  52369906 ctatgaagcacggacactcctcggaataggtgtgtcccggtgttggacacgcgtcggtgtccga 52369843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 282 - 336
Target Start/End: Complemental strand, 52369834 - 52369780
Alignment:
Q  282 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 336  Q
    ||||||| ||||||||||||||| | |||||| | ||||||| ||||||||||||    
T  52369834 ccgacacgacacctatgattacattgaattatgtaattttctcaaattattatcc 52369780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 333
Target Start/End: Complemental strand, 10955056 - 10954960
Alignment:
Q  237 actcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattttcttaaattatta 333  Q
    |||||||||| |||| ||||| | ||||||||||||| || |||||||||| | |||| | |||||||||| |||||| | ||||| | |||||||||    
T  10955056 actcctcggattaggcgtgtcccagtgtcggacacgtgtc-gtgtccgacaccgacacttgtgattacactgaattatgtgattttttcaaattatta 10954960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 335
Target Start/End: Original strand, 14223853 - 14223906
Alignment:
Q  282 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatc 335  Q
    ||||||| |||| ||||| |||||| ||||||||| |||||| |||||||||||    
T  14223853 ccgacacgacacttatgaatacactaaattatatcgttttctcaaattattatc 14223906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 20691370 - 20691325
Alignment:
Q  290 acacctatgattacacttaattatatcattttcttaaattattatc 335  Q
    |||| |||||||||||| |||||| ||||||||| |||||||||||    
T  20691370 acacatatgattacactgaattatgtcattttctcaaattattatc 20691325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 335
Target Start/End: Complemental strand, 21149169 - 21149073
Alignment:
Q  239 tcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattttcttaaattattatc 335  Q
    |||||||| ||||||||| |||||||| |||||   |  |||||||||| | ||| || |||||||||| |||||| ||||||||| |||||||||||    
T  21149169 tcctcggattaggtgtgt-tcggtgtcagacacacgttggtgtccgacaacgacatctttgattacactgaattatgtcattttctcaaattattatc 21149073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Original strand, 40150579 - 40150624
Alignment:
Q  290 acacctatgattacacttaattatatcattttcttaaattattatc 335  Q
    |||| |||||||||| | |||||||||||||||| |||||||||||    
T  40150579 acacatatgattacattgaattatatcattttctcaaattattatc 40150624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 333
Target Start/End: Original strand, 40993275 - 40993387
Alignment:
Q  222 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatca-tt 319  Q
    ||||||||||   |||||||||||| |||| ||||| |||||||||||| || || |||||||||| | |||| ||| |||||||| |||||| | | ||    
T  40993275 ctatgaagcatggacactcctcggattaggcgtgtcccggtgtcggacatgtgtc-gtgtccgacaccgacacatataattacactgaattatgtgattt 40993373  T
Q  320 ttcttaaattatta 333  Q
    || |||||||||||    
T  40993374 tttttaaattatta 40993387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 222 - 321
Target Start/End: Complemental strand, 7171620 - 7171521
Alignment:
Q  222 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattt 320  Q
    ||||||||||   |||||||| ||| |||| ||||| ||||||||||||||| || |||||||||| |||||| | | |||||||  |||||||| ||||    
T  7171620 ctatgaagcatatacactccttggattaggcgtgtcgcggtgtcggacacgtgtc-gtgtccgacaccaacacttgtaattacaccgaattatatgattt 7171522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 235 - 335
Target Start/End: Complemental strand, 12278941 - 12278841
Alignment:
Q  235 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattat 334  Q
    |||||||| ||| |||||||||| ||||||| ||||||  |  ||||||||||| |||| ||| |||||||| |||||| ||||||||||||||||||||    
T  12278941 acactcctaggattaggtgtgtcccggtgtcagacacgcgttggtgtccgacacgacacatataattacactgaattatgtcattttcttaaattattat 12278842  T
Q  335 c 335  Q
    |    
T  12278841 c 12278841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 261 - 336
Target Start/End: Complemental strand, 23751980 - 23751905
Alignment:
Q  261 gtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 336  Q
    ||||| ||||||  || ||||||||||| ||||||||||||||||| |||||||||||||| | ||||||||||||    
T  23751980 gtgtctgacacgcgtcggtgtccgacacgacacctatgattacactaaattatatcattttatcaaattattatcc 23751905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 29812664 - 29812716
Alignment:
Q  282 ccgacacaacacctatgattacacttaattatatcattttcttaaattattat 334  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||||||||||    
T  29812664 ccgacacgacacctatgattacactaaattatatcattttctcaaattattat 29812716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 282 - 336
Target Start/End: Complemental strand, 23930278 - 23930224
Alignment:
Q  282 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 336  Q
    ||||||||||||||||||||||||| |||||| ||||||||| |||||| |||||    
T  23930278 ccgacacaacacctatgattacactgaattatgtcattttctcaaattactatcc 23930224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 220 - 331
Target Start/End: Original strand, 7133210 - 7133327
Alignment:
Q  220 aactatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac------aacacctatgattacacttaattat 313  Q
    ||||||||||||   || |||||| || |||||||||| | ||||||||||||  || |||||||||||      | |||||||||||||||| ||||||    
T  7133210 aactatgaagcacggacgctcctcagattaggtgtgtcccagtgtcggacacgcgtcggtgtccgacaccgacacaccacctatgattacactgaattat 7133309  T
Q  314 atcattttcttaaattat 331  Q
     ||||||||| |||||||    
T  7133310 gtcattttctcaaattat 7133327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 286
Target Start/End: Complemental strand, 17852120 - 17852056
Alignment:
Q  221 actatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgac 286  Q
    |||||||||||   |||||||||| | |||||||||||||||||||||||||| ||| ||||||||    
T  17852120 actatgaagcacggacactcctcgaattaggtgtgtctcggtgtcggacacgtgtca-tgtccgac 17852056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 32855409 - 32855360
Alignment:
Q  286 cacaacacctatgattacacttaattatatcattttcttaaattattatc 335  Q
    |||||||| |||||||||| | ||||| ||||||||||||||||||||||    
T  32855409 cacaacacatatgattacattcaattaaatcattttcttaaattattatc 32855360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 222 - 294
Target Start/End: Original strand, 5409771 - 5409842
Alignment:
Q  222 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacc 294  Q
    ||||||||||   |||||||||||| |||| ||||| ||||||||||||||| || ||||||||||| |||||    
T  5409771 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtccgacacgacacc 5409842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 222 - 333
Target Start/End: Complemental strand, 15680928 - 15680817
Alignment:
Q  222 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattt 320  Q
    ||||||||||   |||||||||| | |||  ||||||||||||||||||||| || |||||||||| | |||| ||| |||||||| |||||| | ||||    
T  15680928 ctatgaagcacggacactcctcgaattagacgtgtctcggtgtcggacacgtgtc-gtgtccgacaccgacacttataattacactaaattatgtgattt 15680830  T
Q  321 tcttaaattatta 333  Q
    | || ||||||||    
T  15680829 tttttaattatta 15680817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 336
Target Start/End: Original strand, 4017797 - 4017848
Alignment:
Q  285 acacaacacctatgattacacttaattatatcattttcttaaattattatcc 336  Q
    |||| |||| |||||||||||| ||||||||| |||||| ||||||||||||    
T  4017797 acacgacacttatgattacactaaattatatcgttttctcaaattattatcc 4017848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 336
Target Start/End: Original strand, 22683758 - 22683809
Alignment:
Q  285 acacaacacctatgattacacttaattatatcattttcttaaattattatcc 336  Q
    |||| |||||||||||| |||| ||||||||||| |||| ||||||||||||    
T  22683758 acacgacacctatgattgcactgaattatatcatattctcaaattattatcc 22683809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 294
Target Start/End: Original strand, 32093952 - 32094026
Alignment:
Q  220 aactatgaagcagtaacactcctcggaataggtgtgt-ctcggtgtcggacacgtatcagtgtccgacacaacacc 294  Q
    ||||||||||||  ||||||||||||| |||| |||| | ||||||||||||||| || ||||||||||| |||||    
T  32093952 aactatgaagcacgaacactcctcggattaggcgtgtccccggtgtcggacacgtgtc-gtgtccgacacgacacc 32094026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 270
Target Start/End: Complemental strand, 32308249 - 32308202
Alignment:
Q  223 tatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggaca 270  Q
    |||||||||  ||||||||||||| ||| |||||||||||||||||||    
T  32308249 tatgaagcatgaacactcctcggattagctgtgtctcggtgtcggaca 32308202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 282 - 336
Target Start/End: Original strand, 17780084 - 17780138
Alignment:
Q  282 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 336  Q
    ||||||| |||||||| ||||||   |||||| ||||||||||||||||||||||    
T  17780084 ccgacacgacacctattattacatagaattatgtcattttcttaaattattatcc 17780138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 288
Target Start/End: Original strand, 32287416 - 32287468
Alignment:
Q  235 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac 288  Q
    |||||||||||| |||||||||| ||||||||||||| | ||| ||||||||||    
T  32287416 acactcctcggattaggtgtgtcccggtgtcggacacttgtca-tgtccgacac 32287468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 222 - 333
Target Start/End: Complemental strand, 598327 - 598216
Alignment:
Q  222 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattt 320  Q
    ||||||||||   ||||| |||||| |||| ||||| ||||||||||||||| || ||||| |||| | |||| ||  |||||| |||||||  | ||||    
T  598327 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtctgacaccgacacttacaattacatttaattacgtgattt 598229  T
Q  321 tcttaaattatta 333  Q
    |||||||||||||    
T  598228 tcttaaattatta 598216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 222 - 346
Target Start/End: Original strand, 22794018 - 22794142
Alignment:
Q  222 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcatttt 321  Q
    ||||||||||   |||||||||| | |||||||||| ||| |||||||| |  |||||||| ||||| |||||||| ||||||||  ||||| |||||||    
T  22794018 ctatgaagcacgtacactcctcgaattaggtgtgtcccggagtcggacatgcgtcagtgtcggacacgacacctataattacactgtattatgtcatttt 22794117  T
Q  322 cttaaattattatccttgttgacgt 346  Q
     | |||||||||||| |||||||||    
T  22794118 ttcaaattattatccgtgttgacgt 22794142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 282 - 336
Target Start/End: Original strand, 42004947 - 42005001
Alignment:
Q  282 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 336  Q
    ||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||    
T  42004947 ccgacacaacacctatgattacactaaattatgtcattttctcaaattattatcc 42005001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 284 - 343
Target Start/End: Original strand, 6936402 - 6936461
Alignment:
Q  284 gacacaacacctatgattacacttaattatatcattttcttaaattattatccttgttga 343  Q
    ||||| |||||||||||||||||||||||| ||||||||| | |||||||||| ||||||    
T  6936402 gacacgacacctatgattacacttaattatgtcattttctcagattattatccgtgttga 6936461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 283 - 336
Target Start/End: Complemental strand, 6574047 - 6573994
Alignment:
Q  283 cgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 336  Q
    |||||||||||||||||||||||| |||||||||||| ||| ||||||| ||||    
T  6574047 cgacacaacacctatgattacactaaattatatcattgtctcaaattatcatcc 6573994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 237 - 335
Target Start/End: Complemental strand, 19637872 - 19637774
Alignment:
Q  237 actcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacaca-acacctatgattacacttaattatatcattttcttaaattattatc 335  Q
    |||||||||| |||| | ||| |||||||||| | ||||| |||||||||||  |||| |||||||||| | ||| || |||||||||||||||||||||    
T  19637872 actcctcggattaggggcgtcccggtgtcggatatgtatc-gtgtccgacaccgacacatatgattacattgaataatgtcattttcttaaattattatc 19637774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 219 - 333
Target Start/End: Original strand, 46348320 - 46348434
Alignment:
Q  219 aaactatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatca 317  Q
    |||||||||||||   |||| |||||||  ||| ||||||||||||||||||||| || |||||||||| | |||| | | |||||||| |||||||| |    
T  46348320 aaactatgaagcacggacacacctcggatcaggcgtgtctcggtgtcggacacgtgtc-gtgtccgacaccgacacttgtaattacactaaattatatga 46348418  T
Q  318 ttttcttaaattatta 333  Q
    |||| | |||||||||    
T  46348419 ttttttcaaattatta 46348434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 270 - 335
Target Start/End: Complemental strand, 29415819 - 29415754
Alignment:
Q  270 acgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatc 335  Q
    |||| |||||||| |||||||||| | ||||||  || |||||| |||||||||||||||||||||    
T  29415819 acgtgtcagtgtctgacacaacacatgtgattatgctgaattatgtcattttcttaaattattatc 29415754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 1486657 - 1486715
Alignment:
Q  235 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacc 294  Q
    |||||||||||| |||| ||||| ||||||||||||||| || ||||||||||| |||||    
T  1486657 acactcctcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtccgacacgacacc 1486715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 273
Target Start/End: Complemental strand, 15323287 - 15323236
Alignment:
Q  222 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgt 273  Q
    ||||||| || | |||||||||||| ||||||||| ||||||||||||||||    
T  15323287 ctatgaaacactgacactcctcggattaggtgtgtttcggtgtcggacacgt 15323236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 7988446 - 7988504
Alignment:
Q  278 gtgtccgacac-aacacctatgattacacttaattatatcattttcttaaattattatc 335  Q
    ||||||||||| ||||| |||||||||| | |||||| ||| |||||||||||||||||    
T  7988446 gtgtccgacaccaacacttatgattacattgaattatgtcactttcttaaattattatc 7988504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 222 - 311
Target Start/End: Original strand, 9690213 - 9690303
Alignment:
Q  222 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgac-acaacacctatgattacacttaatt 311  Q
    ||||||||||  |||||||  |||| |||| ||||| ||||||||||||||| |||||| |||||  | |||| |||||||||||| ||||    
T  9690213 ctatgaagcacaaacactctccggattaggcgtgtcccggtgtcggacacgtgtcagtggccgacgccgacacatatgattacactgaatt 9690303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 235 - 273
Target Start/End: Original strand, 18190061 - 18190099
Alignment:
Q  235 acactcctcggaataggtgtgtctcggtgtcggacacgt 273  Q
    |||||||||||| |||||||||| |||||||||||||||    
T  18190061 acactcctcggattaggtgtgtcccggtgtcggacacgt 18190099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 220 - 333
Target Start/End: Original strand, 22515825 - 22515938
Alignment:
Q  220 aactatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcat 318  Q
    ||||||||||||   |||||||||||| |||| |||||||||||||||| | || || |||||||||| | |||| | | |||||||| |||||| | ||    
T  22515825 aactatgaagcacggacactcctcggattaggcgtgtctcggtgtcggatatgtgtc-gtgtccgacaccgacacttgtaattacactaaattatgtgat 22515923  T
Q  319 tttcttaaattatta 333  Q
    ||| | |||||||||    
T  22515924 tttttcaaattatta 22515938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 275
Target Start/End: Original strand, 23219615 - 23219656
Alignment:
Q  234 aacactcctcggaataggtgtgtctcggtgtcggacacgtat 275  Q
    |||||| |||||| |||||||||| |||||||||||||||||    
T  23219615 aacacttctcggattaggtgtgtcacggtgtcggacacgtat 23219656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 290 - 333
Target Start/End: Original strand, 12040690 - 12040734
Alignment:
Q  290 acacctatgattacacttaa-ttatatcattttcttaaattatta 333  Q
    ||||||||||||| ||| || ||||||||||||||||||||||||    
T  12040690 acacctatgattatactgaaattatatcattttcttaaattatta 12040734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 299 - 331
Target Start/End: Original strand, 28676183 - 28676215
Alignment:
Q  299 attacacttaattatatcattttcttaaattat 331  Q
    ||||||||||||||||| |||||||||||||||    
T  28676183 attacacttaattatattattttcttaaattat 28676215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 290 - 334
Target Start/End: Original strand, 39101190 - 39101234
Alignment:
Q  290 acacctatgattacacttaattatatcattttcttaaattattat 334  Q
    |||||||| ||||||||||||||| | ||||||| ||||||||||    
T  39101190 acacctataattacacttaattatgttattttctcaaattattat 39101234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 285 - 336
Target Start/End: Original strand, 48415728 - 48415780
Alignment:
Q  285 acacaacacctatgattacacttaattatatcattttctt-aaattattatcc 336  Q
    |||| ||| ||||||||||||| |||||||||||||| || ||||||||||||    
T  48415728 acacgacatctatgattacactaaattatatcatttttttaaaattattatcc 48415780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 282 - 336
Target Start/End: Complemental strand, 6389802 - 6389748
Alignment:
Q  282 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 336  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||    
T  6389802 ccgacacgacacctatgattacactaaattatatcattttctcaaattattatcc 6389748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 282 - 335
Target Start/End: Original strand, 19602181 - 19602234
Alignment:
Q  282 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatc 335  Q
    ||||||||| ||||||||||||||| |||||||||||||||| |||||||||||    
T  19602181 ccgacacaatacctatgattacactgaattatatcattttctcaaattattatc 19602234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 282 - 336
Target Start/End: Complemental strand, 34446624 - 34446570
Alignment:
Q  282 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 336  Q
    ||||||| ||||||||||||||||| |||||| ||||||||| ||||||||||||    
T  34446624 ccgacacgacacctatgattacactgaattatgtcattttctcaaattattatcc 34446570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 282 - 335
Target Start/End: Original strand, 17168463 - 17168516
Alignment:
Q  282 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatc 335  Q
    ||||||| |||||||| |||||||| |||||||||||||||| |||||||||||    
T  17168463 ccgacacgacacctattattacactaaattatatcattttctcaaattattatc 17168516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 248 - 336
Target Start/End: Original strand, 12235485 - 12235573
Alignment:
Q  248 taggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 336  Q
    |||| ||||| ||||| |||||||   || ||||| ||||| ||||||||||||||||| |||||| |||||||||  |||||||||||    
T  12235485 taggggtgtcccggtgccggacacacgtcggtgtcggacacgacacctatgattacactgaattatgtcattttctctaattattatcc 12235573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 222 - 273
Target Start/End: Original strand, 8776908 - 8776959
Alignment:
Q  222 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgt 273  Q
    ||||||||||   |||||||||||| ||||||||||||||||||||||||||    
T  8776908 ctatgaagcacggacactcctcggattaggtgtgtctcggtgtcggacacgt 8776959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 332
Target Start/End: Original strand, 2153895 - 2153937
Alignment:
Q  290 acacctatgattacacttaattatatcattttcttaaattatt 332  Q
    |||||||| |||||||| |||||||||||||||||||||||||    
T  2153895 acacctataattacactaaattatatcattttcttaaattatt 2153937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 281 - 346
Target Start/End: Original strand, 12086344 - 12086409
Alignment:
Q  281 tccgacacaacacctatgattacacttaattatatcattttcttaaattattatccttgttgacgt 346  Q
    |||||||| ||||||||||||| ||| |||||| ||||| ||| |||||||||||| ||| |||||    
T  12086344 tccgacacgacacctatgattaaactgaattatgtcattatctcaaattattatccgtgtcgacgt 12086409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 222 - 333
Target Start/End: Complemental strand, 34595253 - 34595142
Alignment:
Q  222 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattt 320  Q
    ||||||||||   |||||||||||| |||||||||| ||||||| ||||||| || |||||||||| | |||| | | |||||||| |||||| | ||||    
T  34595253 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcagacacgtgtc-gtgtccgacaccgacacttgtaattacactgaattatgtgattt 34595155  T
Q  321 tcttaaattatta 333  Q
    | | |||||||||    
T  34595154 tttcaaattatta 34595142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 288
Target Start/End: Complemental strand, 28152218 - 28152152
Alignment:
Q  221 actatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac 288  Q
    |||||||||||  ||||||||||||| ||||  |||| ||||||||||||||| || |||||||||||    
T  28152218 actatgaagcacgaacactcctcggattaggcctgtcccggtgtcggacacgtgtc-gtgtccgacac 28152152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 333
Target Start/End: Original strand, 30781302 - 30781345
Alignment:
Q  290 acacctatgattacacttaattatatcattttcttaaattatta 333  Q
    ||||||||||||||| |||||||| ||||||||| |||||||||    
T  30781302 acacctatgattacaattaattatgtcattttctcaaattatta 30781345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 6299563 - 6299517
Alignment:
Q  290 acacctatgattacacttaattatatcattttcttaaattattatcc 336  Q
    |||||||| |||||| | |||||||||||||||| ||||||||||||    
T  6299563 acacctatcattacattgaattatatcattttctcaaattattatcc 6299517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 6306373 - 6306327
Alignment:
Q  290 acacctatgattacacttaattatatcattttcttaaattattatcc 336  Q
    |||||||| |||||| | |||||||||||||||| ||||||||||||    
T  6306373 acacctatcattacattgaattatatcattttctcaaattattatcc 6306327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 222 - 331
Target Start/End: Original strand, 13364645 - 13364754
Alignment:
Q  222 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacaca-acacctatgattacacttaattatatcattt 320  Q
    ||||||||||   |||||| |||||||||  |||||  |||||| |||| ||||| |||||| ||||  |||| |||||||||||| |||||||| ||||    
T  13364645 ctatgaagcacagacactcgtcggaatagacgtgtcctggtgtcagacatgtatc-gtgtccaacaccgacacatatgattacactgaattatatgattt 13364743  T
Q  321 tcttaaattat 331  Q
    ||| |||||||    
T  13364744 tctcaaattat 13364754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 282 - 336
Target Start/End: Complemental strand, 26247485 - 26247431
Alignment:
Q  282 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 336  Q
    ||||||| | ||||||||||| ||| || ||| ||||||||||||||||||||||    
T  26247485 ccgacacgaaacctatgattatactaaaatatgtcattttcttaaattattatcc 26247431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 346
Target Start/End: Complemental strand, 7625170 - 7625117
Alignment:
Q  293 cctatgattacacttaattatatcattttcttaaattattatccttgttgacgt 346  Q
    ||||| |||| ||| |||||||||||||||| |||||||||||| ||| |||||    
T  7625170 cctataattatactaaattatatcattttctcaaattattatccgtgtcgacgt 7625117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 4420185 - 4420225
Alignment:
Q  288 caacacctatgattacacttaattatatcattttcttaaat 328  Q
    ||||||||||| ||||||| |||||||||||||||| ||||    
T  4420185 caacacctatggttacactgaattatatcattttctcaaat 4420225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 8389421 - 8389457
Alignment:
Q  235 acactcctcggaataggtgtgtctcggtgtcggacac 271  Q
    |||||||||||| |||||||||| |||||||||||||    
T  8389421 acactcctcggattaggtgtgtcccggtgtcggacac 8389457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 31959256 - 31959220
Alignment:
Q  235 acactcctcggaataggtgtgtctcggtgtcggacac 271  Q
    |||||||||||| |||||||||| |||||||||||||    
T  31959256 acactcctcggattaggtgtgtcccggtgtcggacac 31959220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 290 - 334
Target Start/End: Original strand, 34895042 - 34895086
Alignment:
Q  290 acacctatgattacacttaattatatcattttcttaaattattat 334  Q
    ||||||||||||||||| |||| ||| ||||||| ||||||||||    
T  34895042 acacctatgattacactgaattgtataattttctcaaattattat 34895086  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 278 - 336
Target Start/End: Complemental strand, 12748747 - 12748689
Alignment:
Q  278 gtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 336  Q
    ||||||||||||||||||||||||||||| || ||| ||||||||| ||||||||||||    
T  12748747 gtgtccgacacaacacctatgattacactgaactatgtcattttctcaaattattatcc 12748689  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 282 - 335
Target Start/End: Original strand, 23354652 - 23354705
Alignment:
Q  282 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatc 335  Q
    ||||||| ||||||||||||||||| |||||||||||||||| |||||||||||    
T  23354652 ccgacacgacacctatgattacactaaattatatcattttctcaaattattatc 23354705  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 282 - 334
Target Start/End: Complemental strand, 25544540 - 25544488
Alignment:
Q  282 ccgacacaacacctatgattacacttaattatatcattttcttaaattattat 334  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||||||||||    
T  25544540 ccgacacgacacctatgattacactgaattatatcattttctcaaattattat 25544488  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 235 - 335
Target Start/End: Complemental strand, 24011148 - 24011042
Alignment:
Q  235 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacaca------acacctatgattacacttaattatatcattttcttaaat 328  Q
    |||||| ||||| || |||||||| ||||||||||||| ||| || || |||||       ||||||||||||||||| |||||| ||||||||| ||||    
T  24011148 acactcttcggattatgtgtgtcttggtgtcggacacgcatccgtatcagacaccgacgcgacacctatgattacactaaattatgtcattttctcaaat 24011049  T
Q  329 tattatc 335  Q
    |||||||    
T  24011048 tattatc 24011042  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 220 - 333
Target Start/End: Original strand, 18840951 - 18841064
Alignment:
Q  220 aactatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcat 318  Q
    ||||||||||||   |||||||||||| |||||||||| |||||||||||| || || ||||| |||| | |||| | | ||||||||||||||| | ||    
T  18840951 aactatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacatgtgtc-gtgtctgacaccgacacttgtaattacacttaattatgtaat 18841049  T
Q  319 tttcttaaattatta 333  Q
    ||| | |||||||||    
T  18841050 tttttcaaattatta 18841064  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 222 - 335
Target Start/End: Original strand, 34006930 - 34007044
Alignment:
Q  222 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacaca-acacctatgattacacttaattatatcattt 320  Q
    ||||||||||   |||||||| | | |||||||||  ||||||| |||||| ||  |||||| ||||  ||||||||||||||||| |||||| ||| ||    
T  34006930 ctatgaagcacggacactccttgaattaggtgtgttccggtgtcagacacgaataggtgtcccacaccgacacctatgattacactgaattatgtcaatt 34007029  T
Q  321 tcttaaattattatc 335  Q
    ||| |||||||||||    
T  34007030 tctcaaattattatc 34007044  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 290 - 335
Target Start/End: Original strand, 23355003 - 23355048
Alignment:
Q  290 acacctatgattacacttaattatatcattttcttaaattattatc 335  Q
    |||||||||||| |||| |||||||||||||||| |||||||||||    
T  23355003 acacctatgattgcactaaattatatcattttctcaaattattatc 23355048  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 296 - 346
Target Start/End: Original strand, 8817470 - 8817520
Alignment:
Q  296 atgattacacttaattatatcattttcttaaattattatccttgttgacgt 346  Q
    ||||||||||| ||||||| ||| ||||||||||||||||  |||||||||    
T  8817470 atgattacactgaattataccatgttcttaaattattatcggtgttgacgt 8817520  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 285 - 335
Target Start/End: Original strand, 10535762 - 10535812
Alignment:
Q  285 acacaacacctatgattacacttaattatatcattttcttaaattattatc 335  Q
    |||| |||| |||||||||||| |||||| ||||||||| |||||||||||    
T  10535762 acacgacacttatgattacactgaattatgtcattttctcaaattattatc 10535812  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 296 - 334
Target Start/End: Complemental strand, 22085049 - 22085011
Alignment:
Q  296 atgattacacttaattatatcattttcttaaattattat 334  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  22085049 atgattacactaaattatgtcattttcttaaattattat 22085011  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 222 - 288
Target Start/End: Complemental strand, 27084388 - 27084323
Alignment:
Q  222 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac 288  Q
    |||||||||||  ||||||||| || |||| |||||||||||| |||||||| || |||||||||||    
T  27084388 ctatgaagcagagacactcctccgattaggcgtgtctcggtgttggacacgtgtc-gtgtccgacac 27084323  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 282 - 336
Target Start/End: Complemental strand, 30563468 - 30563414
Alignment:
Q  282 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 336  Q
    ||||||||||||||||  ||||| | |||||| ||||||||| ||||||||||||    
T  30563468 ccgacacaacacctatagttacattgaattatgtcattttctcaaattattatcc 30563414  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 222 - 288
Target Start/End: Complemental strand, 37419873 - 37419808
Alignment:
Q  222 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac 288  Q
    ||||||||||   |||||||||||| |||| ||||| |||||||||||||| ||| |||||||||||    
T  37419873 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgcatc-gtgtccgacac 37419808  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 285 - 335
Target Start/End: Complemental strand, 38919262 - 38919212
Alignment:
Q  285 acacaacacctatgattacacttaattatatcattttcttaaattattatc 335  Q
    |||| ||||||||||||||||| || |||| |||||||| |||||||||||    
T  38919262 acacgacacctatgattacactaaactataacattttctcaaattattatc 38919212  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 331
Target Start/End: Original strand, 11308004 - 11308053
Alignment:
Q  282 ccgacacaacacctatgattacacttaattatatcattttcttaaattat 331  Q
    ||||||| ||||||||||||||||| |||||| ||||||| | |||||||    
T  11308004 ccgacacgacacctatgattacactgaattatgtcattttttcaaattat 11308053  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 335
Target Start/End: Complemental strand, 19574037 - 19573984
Alignment:
Q  282 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatc 335  Q
    |||||||  ||||||| |||||||| |||||| | |||||||||||||||||||    
T  19574037 ccgacacgccacctataattacactgaattatgttattttcttaaattattatc 19573984  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 290 - 334
Target Start/End: Original strand, 4229416 - 4229460
Alignment:
Q  290 acacctatgattacacttaattatatcattttcttaaattattat 334  Q
    |||| |||||||||||| |||||| ||||| ||||||||||||||    
T  4229416 acacatatgattacactgaattatgtcattctcttaaattattat 4229460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 19980794 - 19980746
Alignment:
Q  222 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggaca 270  Q
    ||||||||||  |||||| |||||| ||||||||||||| |||||||||    
T  19980794 ctatgaagcatgaacacttctcggattaggtgtgtctcgatgtcggaca 19980746  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 295 - 335
Target Start/End: Complemental strand, 31026741 - 31026701
Alignment:
Q  295 tatgattacacttaattatatcattttcttaaattattatc 335  Q
    |||||||||| | |||||| |||||||||||||||||||||    
T  31026741 tatgattacattgaattatgtcattttcttaaattattatc 31026701  T

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Target: scaffold0199 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 242 - 347
Target Start/End: Complemental strand, 2048 - 1943
Alignment:
Q  242 tcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatccttgtt 341  Q
    ||||| |||||||||   |||||| |||| || || ||||||||||| ||||||||||||||||| || ||| ||||||||  |||||||||||| |||     
T  2048 tcggattaggtgtgtgcaggtgtcagacatgtgtcggtgtccgacacgacacctatgattacactaaaatatgtcattttcacaaattattatccgtgtc 1949  T
Q  342 gacgta 347  Q
    ||||||    
T  1948 gacgta 1943  T

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Target: scaffold0598 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 282 - 336
Target Start/End: Original strand, 8053 - 8107
Alignment:
Q  282 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 336  Q
    ||||||| | ||||||| ||||||| |||||| ||||||||| ||||||||||||    
T  8053 ccgacacgatacctatgtttacactgaattatgtcattttctcaaattattatcc 8107  T

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Target: scaffold0778 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 335
Target Start/End: Complemental strand, 4453 - 4412
Alignment:
Q  294 ctatgattacacttaattatatcattttcttaaattattatc 335  Q
    ||||||| ||||| ||||||||||| ||||||||||||||||    
T  4453 ctatgatgacactgaattatatcatattcttaaattattatc 4412  T

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Target: scaffold0652 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 272
Target Start/End: Original strand, 415 - 452
Alignment:
Q  235 acactcctcggaataggtgtgtctcggtgtcggacacg 272  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  415 acactcctcggattaggtgtgtcccggtgtcggacacg 452  T

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Target: scaffold0053 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 333
Target Start/End: Complemental strand, 8902 - 8806
Alignment:
Q  237 actcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattttcttaaattatta 333  Q
    ||||||| || |||| ||||||||||||||||||||| || |||||||||| | |||| | | |||||||| ||| |||| ||||| | |||||||||    
T  8902 actcctcagattaggcgtgtctcggtgtcggacacgtgtc-gtgtccgacaccgacacttgtaattacactaaataatatgattttttcaaattatta 8806  T

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Target: scaffold0049 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 56973 - 56932
Alignment:
Q  290 acacctatgattacacttaattatatcattttcttaaattat 331  Q
    |||| |||||||||||| |||||||||||||||| |||||||    
T  56973 acacttatgattacactgaattatatcattttctcaaattat 56932  T

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Target: scaffold0361 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 222 - 333
Target Start/End: Complemental strand, 14646 - 14538
Alignment:
Q  222 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcatttt 321  Q
    ||||||||||   ||||||||  || |||| ||||||||||||||||||||| || |||||||||||  ||| | | |||||||| |||||| | |||||    
T  14646 ctatgaagcacgtacactccttcgattaggcgtgtctcggtgtcggacacgtgtc-gtgtccgacac--cacttgtaattacactgaattatgtgatttt 14550  T
Q  322 cttaaattatta 333  Q
     | |||||||||    
T  14549 ttcaaattatta 14538  T

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