View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6031_low_1 (Length: 1008)
Name: NF6031_low_1
Description: NF6031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6031_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 740; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 740; E-Value: 0
Query Start/End: Original strand, 34 - 993
Target Start/End: Original strand, 2018177 - 2019132
Alignment:
| Q |
34 |
attggctttgattgaattgttctttttctggtgcttcagatattttggatttgatggatttgatggattcgaaggattgggtcgctaatcagggtactga |
133 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2018177 |
attggctttgattggaatgttctttttctggtgcttcagatactttggatttgatggatt---------cgaaggattgggtcgctaatcagggtactga |
2018267 |
T |
|
| Q |
134 |
acccacaactga---------ttggagaacccaactgcaacctgatcaacgccaaagaattgtcaacaaaatgtaagattcagtgtcaatactgtatcac |
224 |
Q |
| |
|
|||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||| |
|
|
| T |
2018268 |
acccactactgacacagttgattggagaactcaactgcaacctgatcaacgccaaagaattgtcaataaaatgtaagattcagtatcaatattgtatca- |
2018366 |
T |
|
| Q |
225 |
tgaggttatttaaataatatttttacctgtcgttgcatttcaaaagaaaattaagaaatgaataaccaatccataacttaacaacattcattgaagattt |
324 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| |||||||||||||| |
|
|
| T |
2018367 |
-gaggttatttaaatagtatttttacctgtcgttgcatttcaaaagaaaattaagaaatgaataaccgatccatatcttgacaaccttcattgaagattt |
2018465 |
T |
|
| Q |
325 |
cttttgtttgttctatagatgcaattctatccaagaatggaagaagtgaa-gnnnnnnnnggaagcatgtctcgtggttctgttcaactttaaaaaatta |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2018466 |
cttttgtttgttctatagatgcaattctatccaataatggaagaagtgaaagaaaaaaaatgaagcatgtctcgtggttctgttcaactttgaaaaatta |
2018565 |
T |
|
| Q |
424 |
aagcatttaagcatacaacttcgcttaattctgttaaatttctgacaaataataagcaaatgcctctcattaattttcagatgaatgttgttcatccgaa |
523 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2018566 |
aagcatttaagcatacaacttcactgaattctgttaaatttctgacaaataataagcaaatgtctctcattaattttcagatgaatgttgttcatccgaa |
2018665 |
T |
|
| Q |
524 |
tcactaccaaatattttcaaggtccatgcatgatttttagcatgcttatgctacaatacttattggtcaggtttacggcctaagagtacatacttttcat |
623 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2018666 |
tcactaccaaatattttcaaggcccatgcatgatttttagcatgcttatgctacaatacttattggtcaggtttacggcctaagagtacatacttttcat |
2018765 |
T |
|
| Q |
624 |
gtttttcgatcatttgctattgcattctgtaacattttgaaataattggaacaaacatttttgtcacattgatgaatgatgatccttggatctgtgatct |
723 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2018766 |
gtttttcgatcatttgctcttgcattctgtaacattttgaaataattggaacaaacatttttgtcacat---tgaatgatgatccttggatctgtgatct |
2018862 |
T |
|
| Q |
724 |
atcctataaacaggaatccaagtgtcaannnnnnnggttctgctggcgagggaatgaaaaattatctttacactgattatctgaacatctctgtcagttg |
823 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2018863 |
atcctataaacaggaatccaagtgtcaatttttttggttctgctggcgggggaatgaaaaattatctttacactgattatctgaacatctctgtcagttg |
2018962 |
T |
|
| Q |
824 |
cattatctcaatttgaaataattgcttttcttctgtagaatggacacgttaagaagacatattcctgtttctggttccgagggattacttgaacttctgg |
923 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2018963 |
cattatctcaatttgaaataattgcttttcttctgtagaatggacacgttaagaagacatattcctgtttctggttccgagggattacttgaacttctgg |
2019062 |
T |
|
| Q |
924 |
agatatctcaacggtttgaagataagatttatacttccgcgacaagccaggtacattcattaccagtatt |
993 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2019063 |
agatatctcaacggtttgaagataagatttatacttccgcgacaagccaggtacattcattaccagtatt |
2019132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 589
Target Start/End: Original strand, 2020721 - 2021287
Alignment:
| Q |
18 |
tcatgtttcttt-cagaattggcttt-gattgaattgttctttttctggtgcttcagatattttggatttgatggatttgatggattcgaaggattgggt |
115 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||| |||||||| ||| ||||| |||||||| | | |||||| |||||||| | ||||||| |
|
|
| T |
2020721 |
tcatgtttcttttcagaattggcttttgattggattgttctatttttggtgtttcagatact---------aaggatttaatggattccagtaattgggt |
2020811 |
T |
|
| Q |
116 |
cgctaatcagggtactgaaccca---------caactgattggagaacccaactgcaacctgatcaacgccaaagaattgtcaacaaaatgtaagattca |
206 |
Q |
| |
|
||||||||||||||||||| ||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
2020812 |
cgctaatcagggtactgaatccattgccgacacaattgattggagaactcaactgcaacctgatcaacgccaaagaattgtcaataatatgtaagatttg |
2020911 |
T |
|
| Q |
207 |
gtgtcaatactgtatcactgaggttatttaaataatatttttacctgtcgttgcatttcaaaagaaaattaagaaatgaataaccaatccataacttaac |
306 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||| || | |
|
|
| T |
2020912 |
gtgtcaatactgtgtca--gaggttatttaaatagtatttttacatgt---tgcatttcaaaagaaaattaagaaatgaataatcaatccataaattgag |
2021006 |
T |
|
| Q |
307 |
aacattcattgaagatttcttttgtttgttctatagatgcaattctatccaagaatggaagaagtgaagnnnnnnnnggaagcatgtctcgtggttctgt |
406 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| ||||| |||||||| |
|
|
| T |
2021007 |
aacctttattgaagatttcttttgtttgttctatagatgcaattctatccaagaatggaagatgtaaaaaaatcat--gaagcacatctcgcggttctgt |
2021104 |
T |
|
| Q |
407 |
tcaactttaaaaaattaaagcatttaagcatacaacttcgcttaattctgttaaatttctgacaaataataagcaaatgcctctcattaattttcagatg |
506 |
Q |
| |
|
||||||| |||||||| || |||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||| || |
|
|
| T |
2021105 |
tcaacttaaaaaaatttaatcatttaagcatacaacttcgctcaattctgttcaatttctgacaaataataggcaaatgcctctcgttaattttcagttg |
2021204 |
T |
|
| Q |
507 |
aatgttgttcatccgaatcactaccaaatattttcaaggtccatgcatgatttttagcatgcttatgctacaatacttattgg |
589 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2021205 |
aatgtgattcatccgaatcactaccaaatattttcaaggtccatgcatgatttttagcatgcttatgctacaatacttattgg |
2021287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 809 - 993
Target Start/End: Original strand, 2035769 - 2035952
Alignment:
| Q |
809 |
catctctgtcagttgcattatctcaatttgaaataattgcttttcttctgtagaatggacacgttaagaagacatattcctgtttctggttccgagggat |
908 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||||||||||||||| | |||||||||||||| ||||||| |||| |||| ||||||||||| ||||||| |
|
|
| T |
2035769 |
catctctgtcacttgcactatct-aatttgaaataattgcttttcctttgtagaatggacacattaagaaaacatcttcccgtttctggttctgagggat |
2035867 |
T |
|
| Q |
909 |
tacttgaacttctggagatatctcaacggtttgaagataagatttatacttccgcgacaagccaggtacattcattaccagtatt |
993 |
Q |
| |
|
| |||||||||| | |||| ||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||| |
|
|
| T |
2035868 |
tgcttgaacttcggaagattgctcaaaggtttgaagataagatttatactgctgcgacaagccaggtacattcattacgagtatt |
2035952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 137 - 303
Target Start/End: Original strand, 1989175 - 1989341
Alignment:
| Q |
137 |
cacaactgattggagaacccaactgcaacctgatcaacgccaaagaattgtcaacaaaatgtaagattcagtgtcaatactgtatcactgaggttattta |
236 |
Q |
| |
|
||||| |||||||||||| ||| | ||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
1989175 |
cacaagtgattggagaactcaaatacaacctgatcaacgccatagaatcgtcaacaaaatgtaagattcagtgtcagtactttatcactgaggttattta |
1989274 |
T |
|
| Q |
237 |
aataatatttttacctgtcgttgcatttcaaaagaaaattaagaaatgaataaccaatccataactt |
303 |
Q |
| |
|
|||| ||| ||| |||| ||||||||| |||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
1989275 |
aatagcattgttagctgttgttgcatttgaaaagaaaattaagaaattaataatcaatccataactt |
1989341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 803 - 993
Target Start/End: Original strand, 2021574 - 2021764
Alignment:
| Q |
803 |
tctgaacatctctgtcagttgcattatctcaatttgaaataattgcttttcttctgtagaatggacacgttaagaagacatattcctgtttctggttccg |
902 |
Q |
| |
|
|||| |||| ||||||| ||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||| || | ||||||||||| ||| | |
|
|
| T |
2021574 |
tctgtacatttctgtcacttgcattatctaaatttgaaataattgatttttctctgtagaatggacacgttaagaaaacgtcttcctgtttctagttatg |
2021673 |
T |
|
| Q |
903 |
agggattacttgaacttctggagatatctcaacggtttgaagataagatttatacttccgcgacaagccaggtacattcattaccagtatt |
993 |
Q |
| |
|
|||||||| ||||||||| | |||| ||||| ||||||||||||||||||| ||||| ||||||||| ||||||||||||||| |||||| |
|
|
| T |
2021674 |
agggattaattgaacttcagaagattgctcaaaggtttgaagataagatttacacttctgcgacaagcaaggtacattcattacgagtatt |
2021764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 803 - 993
Target Start/End: Original strand, 1990012 - 1990202
Alignment:
| Q |
803 |
tctgaacatctctgtcagttgcattatctcaatttgaaataattgcttttcttctgtagaatggacacgttaagaagacatattcctgtttctggttccg |
902 |
Q |
| |
|
||||||||||||||||| ||||| ||||| |||||||| |||||||||||| | |||||||||||||||||||||| | || |||| |||||||||| | |
|
|
| T |
1990012 |
tctgaacatctctgtcacttgcactatctaaatttgaagtaattgcttttcctttgtagaatggacacgttaagaaaatatcatcctatttctggttctg |
1990111 |
T |
|
| Q |
903 |
agggattacttgaacttctggagatatctcaacggtttgaagataagatttatacttccgcgacaagccaggtacattcattaccagtatt |
993 |
Q |
| |
|
|||||||||||||||||| | || | ||||| |||||||||||||||| |||||| ||| ||||||||||||||||||||| |||||| |
|
|
| T |
1990112 |
agggattacttgaacttcggaagcttgctcaaaggtttgaagataagatctatactgatgcggcaagccaggtacattcattacgagtatt |
1990202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 400 - 564
Target Start/End: Original strand, 1989427 - 1989592
Alignment:
| Q |
400 |
gttctgttcaactttaaaaaattaaagcatttaagcatacaacttcgcttaa--ttctgttaaatttctgacaaataataagcaaatgcctctcattaat |
497 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| |||||||||||||||| || |||| || ||||| ||| |||||||| |||||||| |||||||| |
|
|
| T |
1989427 |
gttctgtttaactttaaaaaattaaatcattttagcatacaacttcgctcaaaattctattcaatttttgagaaataataggcaaatgcaa-tcattaat |
1989525 |
T |
|
| Q |
498 |
tttcagatgaatgttgttcatccgaatcactaccaaatattttcaaggtccatgcatgatttttagc |
564 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||| ||||||||| |
|
|
| T |
1989526 |
tttcagatgaatgttgttcatctgaatcactactaaatattttcaagttccatgcattatttttagc |
1989592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 2035549 - 2035751
Alignment:
| Q |
18 |
tcatgtttcttt-cagaattggctttgattgaattgttctttttctggtgcttcagatattttggatttgatggatttgatggattcgaaggattgggtc |
116 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| || | |||||||||||| | || |||||||| |
|
|
| T |
2035549 |
tcatgtttcttttcagaattggctttgattggattgttctttttctggtgcttcagatacttcgtatttgatggatt---------ccaataattgggtc |
2035639 |
T |
|
| Q |
117 |
gctaatcagggtactgaacccacaac---------tgattggagaacccaactgcaacctgatcaacgccaaagaattgtcaacaaaatgtaagattcag |
207 |
Q |
| |
|
||||||||||||| ||| |||| | |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2035640 |
cctaatcagggtacggaagccactgccgacacagttgattggagaactcaactgcaacctgatcaacgccaaagaattgtcaataaaatgtaagattcag |
2035739 |
T |
|
| Q |
208 |
tgtcaatactgt |
219 |
Q |
| |
|
| |||||||||| |
|
|
| T |
2035740 |
tttcaatactgt |
2035751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 613 - 710
Target Start/End: Original strand, 1989679 - 1989776
Alignment:
| Q |
613 |
atacttttcatgtttttcgatcatttgctattgcattctgtaacattttgaaataattggaacaaacatttttgtcacattgatgaatgatgatcctt |
710 |
Q |
| |
|
|||||||| | ||||| |||| ||| || ||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
1989679 |
atactttttaagttttatgatcttttactgttgcattgtgtaacattttgaaataattggaacaaacttttttgtatcattgatgaatgatgatcctt |
1989776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 613 - 718
Target Start/End: Original strand, 2021348 - 2021452
Alignment:
| Q |
613 |
atacttttcatgtttttcgatcatttgctattgcattctgtaacattttgaaataattggaacaaacatttttgtcacattgatgaatgatgatccttgg |
712 |
Q |
| |
|
|||||||||| ||||| | |||| ||||| ||||||| |||||||||||||||| ||||||||||| ||||||| ||||||||||||| | |||||||| |
|
|
| T |
2021348 |
atacttttcaagtttt-caatcaattgctgttgcattgtgtaacattttgaaatcattggaacaaatttttttgtaacattgatgaatggttatccttgg |
2021446 |
T |
|
| Q |
713 |
atctgt |
718 |
Q |
| |
|
|||||| |
|
|
| T |
2021447 |
atctgt |
2021452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 692 - 736
Target Start/End: Original strand, 1989871 - 1989915
Alignment:
| Q |
692 |
ttgatgaatgatgatccttggatctgtgatctatcctataaacag |
736 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||| ||||||| |
|
|
| T |
1989871 |
ttgatgaatgatgatccttggttctgtgatctgtcctctaaacag |
1989915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 863 - 976
Target Start/End: Original strand, 40911156 - 40911269
Alignment:
| Q |
863 |
atggacacgttaagaagacatattcctgtttctggttccgagggattacttgaacttctggagatatctcaacggtttgaagataagatttatacttccg |
962 |
Q |
| |
|
|||||||| |||| ||| ||| |||||||||||||| || ||||| | |||||||| | |||| | ||| |||||||||||||||||||||| | | |
|
|
| T |
40911156 |
atggacacattaaaaaggcatcttcctgtttctggtcaagaaggattgcatgaacttcggaagattgcccaaaagtttgaagataagatttatactgctg |
40911255 |
T |
|
| Q |
963 |
cgacaagccaggta |
976 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
40911256 |
caacaagccaggta |
40911269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 863 - 976
Target Start/End: Complemental strand, 44968831 - 44968718
Alignment:
| Q |
863 |
atggacacgttaagaagacatattcctgtttctggttccgagggattacttgaacttctggagatatctcaacggtttgaagataagatttatacttccg |
962 |
Q |
| |
|
|||||||| |||| ||| ||| |||||||||||||| || ||||| | |||||||| | |||| | ||| |||||||||| |||||||||||| | | |
|
|
| T |
44968831 |
atggacacattaaaaaggcatcttcctgtttctggtcaagaaggattgcatgaacttcggaagattgcccaaaggtttgaagagaagatttatactgctg |
44968732 |
T |
|
| Q |
963 |
cgacaagccaggta |
976 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
44968731 |
caacaagccaggta |
44968718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 44969406 - 44969352
Alignment:
| Q |
173 |
acgccaaagaattgtcaacaaaatgtaagattcagtgtcaatactgtatcactga |
227 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||| | | |||||||||||||| |
|
|
| T |
44969406 |
acgccaaagaattgtcaacaaaatgtaagctctagttttagtactgtatcactga |
44969352 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 863 - 976
Target Start/End: Complemental strand, 44983146 - 44983033
Alignment:
| Q |
863 |
atggacacgttaagaagacatattcctgtttctggttccgagggattacttgaacttctggagatatctcaacggtttgaagataagatttatacttccg |
962 |
Q |
| |
|
|||||||| |||| ||| ||| |||||||||||||| || ||||| | ||||||| | |||| | ||| |||||||||| |||||||||||| | | |
|
|
| T |
44983146 |
atggacacattaaaaaggcatcttcctgtttctggtcaagaaggattgcatgaactttggaagattgcccaaaggtttgaagagaagatttatactgctg |
44983047 |
T |
|
| Q |
963 |
cgacaagccaggta |
976 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
44983046 |
caacaagccaggta |
44983033 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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