View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6031_low_5 (Length: 314)
Name: NF6031_low_5
Description: NF6031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6031_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 24 - 305
Target Start/End: Complemental strand, 49954168 - 49953887
Alignment:
| Q |
24 |
cttcactatatgtatttgttccattttcaggagaccgcaaggaaacccattagatcttaacaatttgcctgatgaatactctagagatcatggtaaacaa |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49954168 |
cttcactatatgtatttgttccattttcaggagaccgcaaggaaacccattagatcttaacaatttgcctgatgaatactctagagatcatggtaaacaa |
49954069 |
T |
|
| Q |
124 |
ctccttgaagacactgatctacccggtaaattattttacannnnnnncttcttcttaatttagtgatcaaatcatacagtataaatatacactgaaacat |
223 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49954068 |
ctccttgaagacactgatctacccggtaatttattttacatttttttcttcttcttaatttagtgatcaaatcatacagtataaatatacactgaaacat |
49953969 |
T |
|
| Q |
224 |
atataaaaacaacataaaacttgtttccacaggaaacaaaattaaacactgtcatattttgtcatccccgtggtatattctt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49953968 |
atataaaaacaacataaaacttgtttccacaggaaacaaaattaaacactgtcatattttgtcatccccgtggtatattctt |
49953887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University