View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6031_low_6 (Length: 299)
Name: NF6031_low_6
Description: NF6031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6031_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 38170042 - 38169769
Alignment:
| Q |
19 |
taaaagacaaatggaggaaattgcacgtgccttgttggattctggattttctttcttgtgggttattagagataaaaaattacaacaacaaaaagaagaa |
118 |
Q |
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| T |
38170042 |
taaaagacaaatggaggaaattgcacgtgccttgttggattctggattttctttcttgtgggttattagagataaaaaattacaacaacaaaaagaagaa |
38169943 |
T |
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| Q |
119 |
g---ttgatgatgatgagctgagttgtagagaggaacttgagaataatatgaatgggaagataataaaatggtgtagtcaggtggaggttttgtcgcacc |
215 |
Q |
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| T |
38169942 |
gaagttgatgatgatgagctgagttgtagagaggaacttgagaataatatgaatgggaagatagtaaaatggtgtagtcaggtggaggttttgtcgcacc |
38169843 |
T |
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| Q |
216 |
gttctttgggttgttttatgacgcattgtggatggaattcgactttggaaagtttgggttcaggggttcctatg |
289 |
Q |
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| T |
38169842 |
gttctttgggttgttttatgacgcattgtggatggaattcgactttggaaagtttgggttcaggggttcctatg |
38169769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 23 - 289
Target Start/End: Complemental strand, 38184521 - 38184252
Alignment:
| Q |
23 |
agacaaatggaggaaattgcacgtgccttgttggattctggattttctttcttgtgggttattagagataaaaaa-tta--caacaacaaaaagaagaag |
119 |
Q |
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| T |
38184521 |
agacaaatggaggaaattggacgtgcgttgttggattctggattttatttcttgtgggtaattagagatgaaaaagttatgcaacaaaaagaagaggagg |
38184422 |
T |
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| Q |
120 |
ttgatgatgatgagctgagttgtagagaggaacttgagaataatatgaatgggaagataataaaatggtgtagtcaggtggaggttttgtcgcaccgttc |
219 |
Q |
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| T |
38184421 |
gtgatagtgatgagttaagttgtagagaggaacttgagaggaatgttaatgggaagatagtgaaatggtgtagtcaggtggaggttttgtcgcaccgttc |
38184322 |
T |
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| Q |
220 |
tttgggttgttttatgacgcattgtggatggaattcgactttggaaagtttgggttcaggggttcctatg |
289 |
Q |
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| T |
38184321 |
tttgggttgttttatgacgcattgtggatggaattcgactttggaaagtttgggttcaggggttcctatg |
38184252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 23 - 289
Target Start/End: Complemental strand, 38179852 - 38179583
Alignment:
| Q |
23 |
agacaaatggaggaaattgcacgtgccttgttggattctggattttctttcttgtgggttattagagataaaaaa-tta--caacaacaaaaagaagaag |
119 |
Q |
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| T |
38179852 |
agacaaatggaggaaattggacgtgcgttgttggattctggattttatttcttgtgggtaattagagatgaaaaagttatgcaacaaaaagaagaggagg |
38179753 |
T |
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| Q |
120 |
ttgatgatgatgagctgagttgtagagaggaacttgagaataatatgaatgggaagataataaaatggtgtagtcaggtggaggttttgtcgcaccgttc |
219 |
Q |
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| T |
38179752 |
gtgatagtgatgagttaagttgtagagaggagcttgagaggaatgttaatgggaagatagtgaaatggtgtagtcaggtggaggttttgtcgcaccgttc |
38179653 |
T |
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| Q |
220 |
tttgggttgttttatgacgcattgtggatggaattcgactttggaaagtttgggttcaggggttcctatg |
289 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38179652 |
tttaggttgttttatgacgcattgtggatggaattcgactttggaaagtttaggttcaggggttcctatg |
38179583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 35053930 - 35053994
Alignment:
| Q |
23 |
agacaaatggaggaaattgcacgtgccttgttggattctggattttctttcttgtgggttattag |
87 |
Q |
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| T |
35053930 |
agacaaagggaggaaattgcacatgctttgttggattgtggatttccattcttgtgggttcttag |
35053994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 221 - 285
Target Start/End: Original strand, 35060845 - 35060909
Alignment:
| Q |
221 |
ttgggttgttttatgacgcattgtggatggaattcgactttggaaagtttgggttcaggggttcc |
285 |
Q |
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| T |
35060845 |
ttgggttgttttttgactcattgtggttggaactcgactttggaaagtttggtatctggggttcc |
35060909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 289
Target Start/End: Original strand, 35054107 - 35054175
Alignment:
| Q |
221 |
ttgggttgttttatgacgcattgtggatggaattcgactttggaaagtttgggttcaggggttcctatg |
289 |
Q |
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|||||||||||| |||| || ||||| |||||||| ||||||||||| |||| ||||||||||||| |
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| T |
35054107 |
ttgggttgttttttgacacactgtggttggaattcaactttggaaagcttggtaaaaggggttcctatg |
35054175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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