View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6032_low_1 (Length: 400)

Name: NF6032_low_1
Description: NF6032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6032_low_1
NF6032_low_1
[»] chr5 (3 HSPs)
chr5 (11-372)||(32267511-32267878)
chr5 (11-362)||(41901241-41901598)
chr5 (90-372)||(41889247-41889529)
[»] chr8 (5 HSPs)
chr8 (30-140)||(27922563-27922679)
chr8 (97-154)||(28246206-28246263)
chr8 (177-362)||(17627762-17627947)
chr8 (94-193)||(34936035-34936134)
chr8 (28-71)||(17636403-17636447)
[»] chr4 (18 HSPs)
chr4 (84-218)||(1600537-1600671)
chr4 (246-361)||(547193-547308)
chr4 (93-154)||(553606-553667)
chr4 (97-154)||(644961-645018)
chr4 (93-156)||(3438475-3438538)
chr4 (278-368)||(10634134-10634224)
chr4 (84-145)||(53761692-53761753)
chr4 (93-145)||(641042-641094)
chr4 (12-71)||(8184032-8184092)
chr4 (12-71)||(8187093-8187153)
chr4 (93-156)||(6006455-6006518)
chr4 (93-131)||(566316-566354)
chr4 (26-71)||(1519144-1519190)
chr4 (26-71)||(12116577-12116623)
chr4 (93-154)||(1524397-1524458)
chr4 (90-135)||(7225813-7225858)
chr4 (336-373)||(53761480-53761517)
chr4 (93-157)||(659836-659900)
[»] chr3 (4 HSPs)
chr3 (97-156)||(1657378-1657437)
chr3 (93-145)||(13470652-13470704)
chr3 (339-372)||(514421-514454)
chr3 (11-71)||(51120895-51120956)
[»] chr6 (9 HSPs)
chr6 (97-154)||(11936186-11936243)
chr6 (97-154)||(11948166-11948223)
chr6 (96-210)||(9411482-9411596)
chr6 (93-145)||(6402987-6403039)
chr6 (300-362)||(10579461-10579523)
chr6 (93-130)||(12097145-12097182)
chr6 (336-368)||(6602905-6602937)
chr6 (336-368)||(7119506-7119538)
chr6 (336-368)||(7131984-7132016)
[»] chr7 (2 HSPs)
chr7 (100-157)||(7977712-7977769)
chr7 (93-145)||(10614720-10614772)
[»] chr1 (1 HSPs)
chr1 (91-310)||(9586761-9586980)
[»] scaffold0014 (1 HSPs)
scaffold0014 (93-145)||(88943-88995)


Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 372
Target Start/End: Original strand, 32267511 - 32267878
Alignment:
Q  11 catcatcaactgatctatgtgacaagttcaacacctctaatttggaaa-ttcaaagttcatttctagtttcact-----acactgggataagttcaaatg 104  Q
    |||||||||||  | | |||||||||||||| ||||| ||||||| || |||||||||||||||||||||||||     |||||||||||||||||||||    
T  32267511 catcatcaactattgtttgtgacaagttcaatacctccaatttgggaacttcaaagttcatttctagtttcactgttgaacactgggataagttcaaatg 32267610  T
Q  105 tctaatgttacaaaatatccttaaaacttgaacaataccttattcagatatgcgacaacaattgctcaagtaaagcagctgcaaattggagaaggtggaa 204  Q
    ||||||||||||| |||||||||||| |||||| ||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||    
T  32267611 tctaatgttacaacatatccttaaaaattgaacgataccttcttcagatatgcgacaacaattgctcaaatcaagcagctgcaaattggagaagatggaa 32267710  T
Q  205 gcaaacgttatgatatattcatcaaataactatggattgtgagccaaatgaagatacttcaattgagggcaagcaacaaaatccattaaagatttagaac 304  Q
    |||| | |  |||||||||||||||||| | ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  32267711 gcaagcatggtgatatattcatcaaatagccatggattgtgagccaaacgaagatactttaattgagggcaagcaacaaaatccatcaaagatttagaac 32267810  T
Q  305 tctctagactctttttccaaatacatttgtgttccattttgatctcactaagtgaagggcagttctta 372  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32267811 tctctagactctttttcccaatacatgtgtgttccattttgatctcactaagtgaagggcagttctta 32267878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 11 - 362
Target Start/End: Complemental strand, 41901598 - 41901241
Alignment:
Q  11 catcatcaactgatctatgtgacaagttcaacacctctaatttggaaa-ttcaaagttcatttctagtttcacta-----cactgggataagttcaaatg 104  Q
    |||||||||||  | ||| |||||||||||||||||| | ||||| || ||||||||  ||||||||| ||||||     |||| |||||||||||||||    
T  41901598 catcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagtctatttctagtctcactatggaacacttggataagttcaaatg 41901499  T
Q  105 tctaatgttacaaaatatccttaaaacttgaacaataccttattcagatatgcgacaacaattgctcaagtaaagcagctgcaaattggagaaggtggaa 204  Q
    ||||||||||||| | ||||||||||||||||||||||||| |||| |||||||||||||||||||||| | ||||||||||||||||| |||  |||||    
T  41901498 tctaatgttacaacacatccttaaaacttgaacaataccttcttcaaatatgcgacaacaattgctcaaatcaagcagctgcaaattggggaaaatggaa 41901399  T
Q  205 gcaaacgttatgatatattcatcaaataactatggattgtgagccaaatgaagatacttcaattgagggcaagcaacaaaatccattaaagatttagaac 304  Q
    || ||| || |||| | ||||||||||||| | ||||||||||||||  |||||||||| ||||||||| | |||||||||| ||| |||||| ||||||    
T  41901398 gcgaacattgtgatgtcttcatcaaataaccacggattgtgagccaatcgaagatactttaattgagggtatgcaacaaaattcatcaaagatctagaac 41901299  T
Q  305 tctctagactctttttccaaatacatttgtgttccattttgatctcactaagtgaagg 362  Q
    |||||||||||| ||||| ||||| | ||| |||||| ||||| |||| |||||||||    
T  41901298 tctctagactctctttcccaatacctgtgtcttccatattgatatcaccaagtgaagg 41901241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 90 - 372
Target Start/End: Complemental strand, 41889529 - 41889247
Alignment:
Q  90 ggataagttcaaatgtctaatgttacaaaatatccttaaaacttgaacaataccttattcagatatgcgacaacaattgctcaagtaaagcagctgcaaa 189  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||  ||||||||  ||| |||||||||||||||||||||| | ||| |||||||||    
T  41889529 ggataagttcaaatatctaatgttacaacatatccttaaaacttgagtaataccttcatcaaatatgcgacaacaattgctcaaatcaagtagctgcaaa 41889430  T
Q  190 ttggagaaggtggaagcaaacgttatgatatattcatcaaataactatggattgtgagccaaatgaagatacttcaattgagggcaagcaacaaaatcca 289  Q
    || | |||  ||||||||||| ||||||| | ||||||  ||||| ||||||| ||||||||| |||||| ||| ||||||||| | |||||||||||||    
T  41889429 ttagggaaaatggaagcaaacattatgatgtcttcatctgataaccatggattttgagccaaacgaagatgctttaattgagggtatgcaacaaaatcca 41889330  T
Q  290 ttaaagatttagaactctctagactctttttccaaatacatttgtgttccattttgatctcactaagtgaagggcagttctta 372  Q
    | ||||||||||| |||| |||||||| ||| | ||||||  ||||||||||||||||  ||| ||||||||| || ||||||    
T  41889329 tcaaagatttagagctctttagactctattttccaatacacgtgtgttccattttgataacacaaagtgaaggacaattctta 41889247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 27922563 - 27922679
Alignment:
Q  30 tgacaagttcaacacctctaatttggaaa-ttcaaagttcatttctagtttcacta-----cactgggataagttcaaatgtctaatgttacaaaatatc 123  Q
    |||||||||||||||||| ||||||| || |||||||||||||||||||||||| |     |||| |||||||||||||||||||||||||||  |||||    
T  27922563 tgacaagttcaacacctccaatttgggaacttcaaagttcatttctagtttcaccattgaacacttggataagttcaaatgtctaatgttacagcatatc 27922662  T
Q  124 cttaaaacttgaacaat 140  Q
    | |||||||||||||||    
T  27922663 cctaaaacttgaacaat 27922679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 28246263 - 28246206
Alignment:
Q  97 ttcaaatgtctaatgttacaaaatatccttaaaacttgaacaataccttattcagata 154  Q
    ||||||||||||||||||||| ||||| ||||||| ||||||||||||| ||||||||    
T  28246263 ttcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttcttcagata 28246206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 177 - 362
Target Start/End: Complemental strand, 17627947 - 17627762
Alignment:
Q  177 aagcagctgcaaattggagaaggtggaagcaaacgttatgatatattcatcaaataactatggattgtgagccaaatgaagatacttcaattgagggcaa 276  Q
    |||||| |||||||||| |||  ||||||||||| || |||| | ||||||  ||| | ||| ||||  ||||||||  ||| | || ||||||||||      
T  17627947 aagcagttgcaaattggggaaaatggaagcaaacattttgatgttttcatcgcatagcaatgaattgaaagccaaatagagagattttaattgagggctt 17627848  T
Q  277 gcaacaaaatccattaaagatttagaactctctagactctttttccaaatacatttgtgttccattttgatctcactaagtgaagg 362  Q
     |||| |||||||  ||||| |||||| ||| |||||||| || || |||| || ||  ||||||||| |||||| ||||||||||    
T  17627847 acaacgaaatccaccaaagaattagaattctttagactctcttccccaatagatgtgcattccatttttatctcattaagtgaagg 17627762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 193
Target Start/End: Complemental strand, 34936134 - 34936035
Alignment:
Q  94 aagttcaaatgtctaatgttacaaaatatccttaaaacttgaacaataccttattcagatatgcgacaacaattgctcaagtaaagcagctgcaaattgg 193  Q
    |||| |||||||||||||| |||| || |||||||||| |||  ||||||||  | |||||||| ||  |||| |||||| | |||||| ||||||||||    
T  34936134 aagtacaaatgtctaatgtcacaacatctccttaaaacatgataaataccttgattagatatgccactgcaatcgctcaaatcaagcagatgcaaattgg 34936035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 17636447 - 17636403
Alignment:
Q  28 tgtgacaagttcaacacctctaattt-ggaaattcaaagttcatt 71  Q
    |||||||||||||||||||| ||||| |||| |||||||||||||    
T  17636447 tgtgacaagttcaacacctccaatttgggaacttcaaagttcatt 17636403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 84 - 218
Target Start/End: Original strand, 1600537 - 1600671
Alignment:
Q  84 acactgggataagttcaaatgtctaatgttacaaaatatccttaaaacttgaacaataccttattcagatatgcgacaacaattgctcaagtaaagcagc 183  Q
    |||||||| |||||||||||||||||| ||| ||||| ||||||||||||||  |||||||| ||||||||||  |   ||| ||||||| | ||||||     
T  1600537 acactgggctaagttcaaatgtctaattttagaaaatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagt 1600636  T
Q  184 tgcaaattggagaaggtggaagcaaacgttatgat 218  Q
    ||||||||||  ||  ||||||||||| |||||||    
T  1600637 tgcaaattgggaaaattggaagcaaacattatgat 1600671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 361
Target Start/End: Original strand, 547193 - 547308
Alignment:
Q  246 agccaaatgaagatacttcaattgagggcaagcaacaaaatccattaaagatttagaactctctagactctttttccaaatacatttgtgttccattttg 345  Q
    ||||||||| ||| |||||||||||||||   ||||||||||| | ||||| |||||| |||||| |||||   ||| |||   | || |||||||||||    
T  547193 agccaaatggagagacttcaattgagggcttacaacaaaatccttgaaagaattagaattctctacactctccatcccaatttttgtgagttccattttg 547292  T
Q  346 atctcactaagtgaag 361  Q
    ||||||||||||||||    
T  547293 atctcactaagtgaag 547308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 553606 - 553667
Alignment:
Q  93 taagttcaaatgtctaatgttacaaaatatccttaaaacttgaacaataccttattcagata 154  Q
    ||||||||||||||||||||||||| || |||||||||| ||||||| | ||| ||||||||    
T  553606 taagttcaaatgtctaatgttacaacatgtccttaaaacatgaacaacagcttcttcagata 553667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 644961 - 645018
Alignment:
Q  97 ttcaaatgtctaatgttacaaaatatccttaaaacttgaacaataccttattcagata 154  Q
    ||||||||||||||||||||| ||||| ||||||| ||||| ||||||| ||||||||    
T  644961 ttcaaatgtctaatgttacaacatatcattaaaacatgaaccataccttcttcagata 645018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 3438538 - 3438475
Alignment:
Q  93 taagttcaaatgtctaatgttacaaaatatccttaaaacttgaacaataccttattcagatatg 156  Q
    |||||||||||||||||| |||||| || ||||||||||||||| || |||||  |||||||||    
T  3438538 taagttcaaatgtctaatcttacaacatctccttaaaacttgaataacaccttcgtcagatatg 3438475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 368
Target Start/End: Complemental strand, 10634224 - 10634134
Alignment:
Q  278 caacaaaatccattaaagatttagaactctctagactctttttccaaatacatttgtgttccattttgatctcactaagtgaagggcagtt 368  Q
    ||||||||||| | ||||| |||||| |||| | | ||||||||| |||| |  ||  ||||||||||||||||||||||||||| |||||    
T  10634224 caacaaaatccctcaaagaattagaattctcgaaattctttttcccaatagacgtgcattccattttgatctcactaagtgaaggacagtt 10634134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 53761753 - 53761692
Alignment:
Q  84 acactgggataagttcaaatgtctaatgttacaaaatatccttaaaacttgaacaatacctt 145  Q
    ||||| || |||||||||||| |||||||||||| || ||||||||||||||  ||||||||    
T  53761753 acactcggctaagttcaaatgcctaatgttacaacatctccttaaaacttgacaaatacctt 53761692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 641042 - 641094
Alignment:
Q  93 taagttcaaatgtctaatgttacaaaatatccttaaaacttgaacaatacctt 145  Q
    |||||||||||||||||  |||||| |||||||||||||||||| ||| ||||    
T  641042 taagttcaaatgtctaacattacaacatatccttaaaacttgaaaaattcctt 641094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 8184092 - 8184032
Alignment:
Q  12 atcatcaactgatctatgtgacaagttcaacacctctaattt-ggaaattcaaagttcatt 71  Q
    ||||||||||  | |||||||||||||||||||||||| ||| |||| |||||||||||||    
T  8184092 atcatcaactcttgtatgtgacaagttcaacacctctagtttcggaacttcaaagttcatt 8184032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 8187153 - 8187093
Alignment:
Q  12 atcatcaactgatctatgtgacaagttcaacacctctaatttggaaa-ttcaaagttcatt 71  Q
    ||||||||||  | |||||||||||||||||||||| | |||||||| |||||||||||||    
T  8187153 atcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagttcatt 8187093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 93 - 156
Target Start/End: Original strand, 6006455 - 6006518
Alignment:
Q  93 taagttcaaatgtctaatgttacaaaatatccttaaaacttgaacaataccttattcagatatg 156  Q
    |||||||||||||||||| |||| | || |||||||||||||| ||| |||||  |||||||||    
T  6006455 taagttcaaatgtctaatcttactacatttccttaaaacttgagcaacaccttcatcagatatg 6006518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 566316 - 566354
Alignment:
Q  93 taagttcaaatgtctaatgttacaaaatatccttaaaac 131  Q
    ||||||||||||| ||||||||||| |||||||||||||    
T  566316 taagttcaaatgtgtaatgttacaacatatccttaaaac 566354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 1519190 - 1519144
Alignment:
Q  26 tatgtgacaagttcaacacctctaattt-ggaaattcaaagttcatt 71  Q
    |||||||||||||||||||||||| ||| |||| |||||||||||||    
T  1519190 tatgtgacaagttcaacacctctagtttgggaacttcaaagttcatt 1519144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 12116623 - 12116577
Alignment:
Q  26 tatgtgacaagttcaacacctct-aatttggaaattcaaagttcatt 71  Q
    ||||||||||||||||||||||| |||||||||  ||||||||||||    
T  12116623 tatgtgacaagttcaacacctctaaatttggaacatcaaagttcatt 12116577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 1524458 - 1524397
Alignment:
Q  93 taagttcaaatgtctaatgttacaaaatatccttaaaacttgaacaataccttattcagata 154  Q
    |||||||||||| ||||  |||||| || |||||||||| |||| |||||||| ||||||||    
T  1524458 taagttcaaatgcctaagtttacaacatctccttaaaacctgaagaataccttcttcagata 1524397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 7225858 - 7225813
Alignment:
Q  90 ggataagttcaaatgtctaatgttacaaaatatccttaaaacttga 135  Q
    ||||||||||||||||||||| |||||| || ||| ||||||||||    
T  7225858 ggataagttcaaatgtctaatcttacaacatctccgtaaaacttga 7225813  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 373
Target Start/End: Complemental strand, 53761517 - 53761480
Alignment:
Q  336 ttccattttgatctcactaagtgaagggcagttcttag 373  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  53761517 ttccattttgatctcactaagtgaaggacagtttttag 53761480  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 157
Target Start/End: Original strand, 659836 - 659900
Alignment:
Q  93 taagttcaaatgtctaatgttacaaaatatccttaaaacttgaacaataccttattcagatatgc 157  Q
    |||||| |||| ||||||||||||| || ||||||||| |||| ||||| ||| |||||| ||||    
T  659836 taagtttaaatatctaatgttacaacatctccttaaaatttgaccaatatcttcttcagaaatgc 659900  T

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Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 97 - 156
Target Start/End: Original strand, 1657378 - 1657437
Alignment:
Q  97 ttcaaatgtctaatgttacaaaatatccttaaaacttgaacaataccttattcagatatg 156  Q
    ||||||||||||||||||||| ||||| ||||||| ||||||||||||| ||||||||||    
T  1657378 ttcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttcttcagatatg 1657437  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 13470704 - 13470652
Alignment:
Q  93 taagttcaaatgtctaatgttacaaaatatccttaaaacttgaacaatacctt 145  Q
    |||||||||||| ||||| |||||| |||||||||||||||||  ||||||||    
T  13470704 taagttcaaatgcctaatcttacaacatatccttaaaacttgacaaatacctt 13470652  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 372
Target Start/End: Complemental strand, 514454 - 514421
Alignment:
Q  339 cattttgatctcactaagtgaagggcagttctta 372  Q
    |||||||||||||||||||||||| |||||||||    
T  514454 cattttgatctcactaagtgaaggacagttctta 514421  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 51120956 - 51120895
Alignment:
Q  11 catcatcaactgatctatgtgacaagttcaacacctctaatttg-gaaattcaaagttcatt 71  Q
    |||||||||||  | |||| ||||||||||||||||| |||||| ||| |||||||||||||    
T  51120956 catcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcatt 51120895  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 11936243 - 11936186
Alignment:
Q  97 ttcaaatgtctaatgttacaaaatatccttaaaacttgaacaataccttattcagata 154  Q
    ||||||||||||||||||||| ||||| ||||||| ||||||||||||| ||||||||    
T  11936243 ttcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttcttcagata 11936186  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 11948223 - 11948166
Alignment:
Q  97 ttcaaatgtctaatgttacaaaatatccttaaaacttgaacaataccttattcagata 154  Q
    ||||||||||||||||||||| ||||| ||||||| ||||||||||||| ||||||||    
T  11948223 ttcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttcttcagata 11948166  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 96 - 210
Target Start/End: Original strand, 9411482 - 9411596
Alignment:
Q  96 gttcaaatgtctaatgttacaaaatatccttaaaacttgaacaataccttattcagatatgcgacaacaattgctcaagtaaagcagctgcaaattggag 195  Q
    |||||||||||||||||||| | || |||||||||| || | ||||||||  | |||||||  ||||||   |||||| | ||||||||||||||||| |    
T  9411482 gttcaaatgtctaatgttaccacatctccttaaaacctgcaaaataccttcgttagatatgttacaacatccgctcaaatcaagcagctgcaaattgggg 9411581  T
Q  196 aaggtggaagcaaac 210  Q
    ||  |||||||||||    
T  9411582 aaaatggaagcaaac 9411596  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 6402987 - 6403039
Alignment:
Q  93 taagttcaaatgtctaatgttacaaaatatccttaaaacttgaacaatacctt 145  Q
    |||||||||||| |||||||||||| || ||||||||||||||  ||||||||    
T  6402987 taagttcaaatgcctaatgttacaacatctccttaaaacttgacaaatacctt 6403039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 362
Target Start/End: Complemental strand, 10579523 - 10579461
Alignment:
Q  300 agaactctctagactctttttccaaatacatttgtgttccattttgatctcactaagtgaagg 362  Q
    |||| |||||| ||||||| ||||||||  | ||| ||||||||||||||||||||| |||||    
T  10579523 agaattctctacactctttgtccaaatagctgtgttttccattttgatctcactaagcgaagg 10579461  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 130
Target Start/End: Original strand, 12097145 - 12097182
Alignment:
Q  93 taagttcaaatgtctaatgttacaaaatatccttaaaa 130  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  12097145 taagttcaaatgtgtaatgttacaacatatccttaaaa 12097182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 368
Target Start/End: Complemental strand, 6602937 - 6602905
Alignment:
Q  336 ttccattttgatctcactaagtgaagggcagtt 368  Q
    ||||||||||||||||||||||||||| |||||    
T  6602937 ttccattttgatctcactaagtgaaggacagtt 6602905  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 368
Target Start/End: Original strand, 7119506 - 7119538
Alignment:
Q  336 ttccattttgatctcactaagtgaagggcagtt 368  Q
    ||||||||||| |||||||||||||||||||||    
T  7119506 ttccattttgaactcactaagtgaagggcagtt 7119538  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 368
Target Start/End: Original strand, 7131984 - 7132016
Alignment:
Q  336 ttccattttgatctcactaagtgaagggcagtt 368  Q
    ||||||||||| |||||||||||||||||||||    
T  7131984 ttccattttgaactcactaagtgaagggcagtt 7132016  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 7977712 - 7977769
Alignment:
Q  100 aaatgtctaatgttacaaaatatccttaaaacttgaacaataccttattcagatatgc 157  Q
    |||||||||||||||||| || |||||||||||||| ||||||||| |||||| ||||    
T  7977712 aaatgtctaatgttacaacatctccttaaaacttgaccaataccttcttcagaaatgc 7977769  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 10614720 - 10614772
Alignment:
Q  93 taagttcaaatgtctaatgttacaaaatatccttaaaacttgaacaatacctt 145  Q
    |||||||||||| ||||| |||||| |||||||||||||||||  ||||||||    
T  10614720 taagttcaaatgcctaatcttacaacatatccttaaaacttgacaaatacctt 10614772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 310
Target Start/End: Original strand, 9586761 - 9586980
Alignment:
Q  91 gataagttcaaatgtctaatgttacaaaatatccttaaaacttgaacaataccttattcagatatgcgacaacaattgctcaagtaaagcagctgcaaat 190  Q
    |||| ||||||||||||||| | |||| || |   ||||||||||  |||||||  || |||||||  ||| |||| || ||  | ||||||||||||||    
T  9586761 gatatgttcaaatgtctaatctgacaacatctttgtaaaacttgacaaatacctcttttagatatgttacagcaatggcacagatcaagcagctgcaaat 9586860  T
Q  191 tggagaaggtggaagcaaacgttatgatatattcatcaaataactatggattgtgagccaaatgaagatacttcaattgagggcaagcaacaaaatccat 290  Q
    ||| |||  | ||||||||| ||||||| | || |||   |||| || ||||| || |||||| |||| ||||||||||||| |   |||||| |||| |    
T  9586861 tggggaaaattgaagcaaacattatgatgtttttatctcttaaccattgattgcgacccaaatcaagagacttcaattgaggtcttacaacaatatcctt 9586960  T
Q  291 taaagatttagaactctcta 310  Q
     ||| |||||||| ||||||    
T  9586961 caaaaatttagaattctcta 9586980  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 88943 - 88995
Alignment:
Q  93 taagttcaaatgtctaatgttacaaaatatccttaaaacttgaacaatacctt 145  Q
    |||||||||||||||||| |||||| || |||||||||  ||| |||||||||    
T  88943 taagttcaaatgtctaatcttacaacatctccttaaaatctgatcaatacctt 88995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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