View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6032_low_2 (Length: 326)
Name: NF6032_low_2
Description: NF6032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6032_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 14742169 - 14741965
Alignment:
| Q |
1 |
tgcacacatcctatttttaattgaatttctttgtggagttgaggtgcagatttggatccctttaaggaataaattttgcaaaagggaagtgtttcaatta |
100 |
Q |
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| T |
14742169 |
tgcacacatcctatttttaattgagtttctttatggagttgaggtgcagatttggatccctttaaggaataaattttgcaaaagcgaagtgtttcaatta |
14742070 |
T |
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| Q |
101 |
ttgtattttcgactccagaaatgatagaaaatggcaatataaacatgt-acccttttgctgtttatatattaaaggcttactgcctgtgtgattttaata |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||| ||||||||||||||| |
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| T |
14742069 |
ttgtattttcgactccagaaatgatagaaaatggcaatataaacatgtaacccttttgctgtttataaattaaaggcttattgcatgtgtgattttaata |
14741970 |
T |
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| Q |
200 |
ctctg |
204 |
Q |
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||||| |
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| T |
14741969 |
ctctg |
14741965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 5 - 146
Target Start/End: Original strand, 14290463 - 14290604
Alignment:
| Q |
5 |
cacatcctatttttaattgaatttctttgtggagttgaggtgcagatttggatccctttaaggaataaattttgcaaaagggaagtgtttcaatta-ttg |
103 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||| |||||| ||| |
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| T |
14290463 |
cacatcctgtttttaattgattttctttgtggagttgaggtgcagatttggatccctttgaggaagaaaatttgcaaaagggaagtgttccaattacttg |
14290562 |
T |
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| Q |
104 |
tattttcgactccagaaatgatagaaaatggcaatataaacat |
146 |
Q |
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| T |
14290563 |
t-ttttcgactcctgaaatgatagaaaatggcaatataaacat |
14290604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 14 - 175
Target Start/End: Original strand, 15010488 - 15010650
Alignment:
| Q |
14 |
tttttaattgaatttctttgtggagttgaggtgcagatttggatccctttaaggaataaattttgcaaaagg-gaagtgtttcaatta-ttgtattttcg |
111 |
Q |
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||||||||||| || ||||||||||||||||||||| || |||||||| |||||| ||| ||||||||| | |||||||||||||| |||| |||||| |
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| T |
15010488 |
tttttaattgaccttgtttgtggagttgaggtgcagaatttgatcccttaaaggaagaaaatttgcaaaaagtgaagtgtttcaattgcttgt-ttttcg |
15010586 |
T |
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| Q |
112 |
actccagaaatgatagaaaatggcaatataaacatgtacccttttgctgtttatatattaaagg |
175 |
Q |
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| T |
15010587 |
actccagaaatgatagaaaatggcaatataaacatgtacccttttggtgtttatagcttaaagg |
15010650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 76 - 207
Target Start/End: Original strand, 14283223 - 14283354
Alignment:
| Q |
76 |
ttgcaaaagggaagtgtttcaatta-ttgtattttcgactccagaaatgatagaaaatggcaatataaacatgtacccttttgctgtttatatattaaag |
174 |
Q |
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||||||||||||||||||||||||| |||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
14283223 |
ttgcaaaagggaagtgtttcaattacttgt-tattcgactccagaaattctagaaaatggcaatataaacatgtacccttttgctgttcataacttaaag |
14283321 |
T |
|
| Q |
175 |
gcttactgcctgtgtgattttaatactctgttg |
207 |
Q |
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| |||| ||||||||| |||| |||||||| |
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| T |
14283322 |
gtacactgtatgtgtgattataatgctctgttg |
14283354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 5 - 175
Target Start/End: Original strand, 15053405 - 15053579
Alignment:
| Q |
5 |
cacatcctatttttaattgaatttctttgtggagttgaggtgcagatttggatccctttaaggaataaattttgcaaaaggga-----agtgtttcaatt |
99 |
Q |
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|||||||| ||||||||||| ||||| ||| | || ||||||||||||||| |||||||||| || ||| |||||||||| | ||| |||||||| |
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| T |
15053405 |
cacatcctgtttttaattgattttctatgttg-gtcgaggtgcagatttgggtccctttaagaaagaaaatttgcaaaagaaagtataagtatttcaatt |
15053503 |
T |
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| Q |
100 |
a-ttgtattttcgactccagaaatgatagaaaatggcaatataaacatgtacccttttgctgtttatatattaaagg |
175 |
Q |
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| T |
15053504 |
acttgtttttt-gactctagaaatgattgaaaatggcaatataaacatgtaccattttgctgtttataacttaaagg |
15053579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 233 - 307
Target Start/End: Complemental strand, 14741961 - 14741887
Alignment:
| Q |
233 |
gtagtatgagtcttttactttgccatatttctaactggagttgattatcaatcttgaacgaaataactgaactga |
307 |
Q |
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|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| | ||||||||||||| |
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| T |
14741961 |
gtagtatgagtcttttactttgccatgtttctagctggagttgattatcaatcttgaacaatataactgaactga |
14741887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 233 - 297
Target Start/End: Original strand, 15053617 - 15053681
Alignment:
| Q |
233 |
gtagtatgagtcttttactttgccatatttctaactggagttgattatcaatcttgaacgaaata |
297 |
Q |
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| T |
15053617 |
gtagtatgagtcttttactgtgccatgtttctaactggagttgattatcaatcttgaacaaaata |
15053681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 230 - 308
Target Start/End: Original strand, 15010685 - 15010763
Alignment:
| Q |
230 |
ctggtagtatgagtcttttactttgccatatttctaactggagttgattatcaatcttgaacgaaataactgaactgat |
308 |
Q |
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| T |
15010685 |
ctggtagtatgagtcgtttactgtgccatgtttctaactggagttgattatcaatcttgaacaaactaattaaactgat |
15010763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 238 - 308
Target Start/End: Original strand, 14283356 - 14283425
Alignment:
| Q |
238 |
atgagtcttttactttgccatatttctaactggagttgattatcaatcttgaacgaaataactgaactgat |
308 |
Q |
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| T |
14283356 |
atgagtcttttactgtgccatttttctaactggagttgattatcgatcttgaac-aaataactaaactgat |
14283425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 14283141 - 14283196
Alignment:
| Q |
14 |
tttttaattgaatttctttgtggagttgaggtgcagatttggatccctttaaggaa |
69 |
Q |
| |
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| T |
14283141 |
tttttaattgcttttctttgtggcgttgaggtgcagatttggatccctttaaggaa |
14283196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 260 - 308
Target Start/End: Original strand, 14290660 - 14290707
Alignment:
| Q |
260 |
tttctaactggagttgattatcaatcttgaacgaaataactgaactgat |
308 |
Q |
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| T |
14290660 |
tttctaactggagttgattatcaatcttgaac-aaataactaaactgat |
14290707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 308
Target Start/End: Complemental strand, 15056073 - 15056029
Alignment:
| Q |
264 |
taactggagttgattatcaatcttgaacgaaataactgaactgat |
308 |
Q |
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| T |
15056073 |
taactggggttgattatcaatcttgaacaaaataattaaactgat |
15056029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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