View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6033_high_10 (Length: 431)
Name: NF6033_high_10
Description: NF6033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6033_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 426
Target Start/End: Original strand, 46274763 - 46275173
Alignment:
| Q |
17 |
tcttgaagaaaggatttgagtttggttactaattttacagaaatggaagcagtttcagcttttgttgtatctattagggcatcctagaagtttttatgnn |
116 |
Q |
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| T |
46274763 |
tcttgatgaaaggatttgagtttggttactaattttccagaaatggaagcattttcagcttttgttgtgtcttttagggcatcctacaagattttatgtt |
46274862 |
T |
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| Q |
117 |
nnnnngacaatataaatataaagaa-ttggtttcattagtttgtgtcatttatggatttgtttccaaattaaagatgtttccaactgtttagatctgaga |
215 |
Q |
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| T |
46274863 |
tttttgacaatataaatataaagaagttggtttcattagtttgtgtcatttatggatttgtttccaaattaaggatgtttccaactgtttagatctgaga |
46274962 |
T |
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| Q |
216 |
tctggttttcattttcttcatatgggtgattttctaggttttgttttaatgacagatgttgacagttgttaggaatatatgtgtaggagtagaacccaca |
315 |
Q |
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| T |
46274963 |
tctggttttcattttcttcatatgggtgattttctaggttttgttttaatgacagatgttgacagttgttaggaatatatgtggaggagtagaacccaca |
46275062 |
T |
|
| Q |
316 |
aatatttatctctccaaaaacaacaaaccactctttcactctaatggcttttgatatatggggatggttggtttctggttgttcatggttttagggtatc |
415 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
46275063 |
aatatttatctctccaaaaacaacaaaccacactttcactctaatggcttttgatatacggggatggttggtttctggttgttcatggttttagggtatc |
46275162 |
T |
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| Q |
416 |
tctgtgctgct |
426 |
Q |
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| T |
46275163 |
tgtgtgttgct |
46275173 |
T |
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