View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6033_high_12 (Length: 425)
Name: NF6033_high_12
Description: NF6033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6033_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 277
Target Start/End: Original strand, 31628352 - 31628612
Alignment:
| Q |
19 |
acatggcctaaacattcaccacttgatgtatgtggatatgtatcatttacagtatcttacaaaattcacccgccaaagtatatctgaatcctgaacaaca |
118 |
Q |
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| T |
31628352 |
acatggcctaaatattcaccacttgatgtatgtggatatgtatcatttacagtatcttacaaaattcacccgccaaagtatatctgaatcctgaacaaca |
31628451 |
T |
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| Q |
119 |
actctggccattcacatgtgtggttaacctcttcatcttagcatccccctcgtctgcaataagataatgaaaattcagcagttgtatat----actcagt |
214 |
Q |
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| T |
31628452 |
actctggccattcacttgtgtggttaacctcttcatcttagcattcccctattctgaaataagataatgaaaattcagcagctgtatgtactcactcaat |
31628551 |
T |
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| Q |
215 |
ttattattttcctatagtcctttcatttaaatcctaacatatgtgtatatgttatacacataa |
277 |
Q |
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| T |
31628552 |
ttattattttcctatagtcctttcatttaaatcctaactta--tgtatatgttatacacataa |
31628612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 300 - 425
Target Start/End: Original strand, 31628685 - 31628818
Alignment:
| Q |
300 |
ttacactgaaagtttatattatttctaactctgagacagctactaa--------ctattagcatacatgcaaaatataatactgtaaaaatacataaggt |
391 |
Q |
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| T |
31628685 |
ttacactgaaagtttatattatttctaactctgagacagctactaatagtaatactattatcatacatgcaaaaaataatactgtaaaaacacataagct |
31628784 |
T |
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| Q |
392 |
tttagatgaaaagatatttgaaggccaaaatgac |
425 |
Q |
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| T |
31628785 |
tttagaagaaaagatatttgaaggccaaaatgac |
31628818 |
T |
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