View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6033_high_20 (Length: 324)
Name: NF6033_high_20
Description: NF6033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6033_high_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 13 - 307
Target Start/End: Original strand, 6577692 - 6577986
Alignment:
| Q |
13 |
tcatcaagaatagcaaactgattttcattgggaccaataaatgctgcatctcgacctgtagacaactagttgaattattttattgcacataatgcatgac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6577692 |
tcatcaagaatagcaaactgattttcattgggaccaataaatgctgcatctcgacctgtagacaactagttgaattattttattgcacataatgcatgac |
6577791 |
T |
|
| Q |
113 |
aaagtctggttgaaagagaaaagaaatgtattcctcacacataaatacctttcacattgctgcttttactgtttactgtctctacttcagtattttcccg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6577792 |
aaagtctggttgaaagagaaaagaaatgtattcctcacacataaatacctttcacattgctgcttttactgtttactgtatctacttcagtattttcccg |
6577891 |
T |
|
| Q |
213 |
ataaactacaacttcatttgtaatgccactaaattcgaaagctacaaggaatagatgttgctttttactgtaaatcaagtaatttgcttgatact |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6577892 |
ataaactacaacttcatttgtaatgccactaaattcgaaagctacaaggaatagatgttgctttttactgtaaatcaagtaatttgcttgatact |
6577986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 155 - 300
Target Start/End: Complemental strand, 34243610 - 34243465
Alignment:
| Q |
155 |
aaatacctttcacattgctgcttttactgtttactgtctctacttcagtattttcccgataaactacaacttcatttgtaatgccactaaattcgaaagc |
254 |
Q |
| |
|
|||||||||| || ||||||||||||||||| |||||| ||| ||||||||||||| |||| ||||||||||||||| ||||||||||| || | |
|
|
| T |
34243610 |
aaataccttttactgtgctgcttttactgtttcctgtctgtacatcagtattttcccagtaaagcacaacttcatttgtagaaccactaaattcataaac |
34243511 |
T |
|
| Q |
255 |
tacaaggaatagatgttgctttttactgtaaatcaagtaatttgct |
300 |
Q |
| |
|
|||||| |||| | ||||||||||||| |||||| || |||||| |
|
|
| T |
34243510 |
tacaagaaataagcgctgctttttactgtgaatcaaatattttgct |
34243465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 34243745 - 34243689
Alignment:
| Q |
13 |
tcatcaagaatagcaaactgattttcattgggaccaataaatgctgcatctcgacct |
69 |
Q |
| |
|
|||||||| || ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34243745 |
tcatcaagtatggcaaactgattttcattggaaccaataaatgctgcatctcgacct |
34243689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University