View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6033_high_23 (Length: 301)

Name: NF6033_high_23
Description: NF6033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6033_high_23
NF6033_high_23
[»] chr3 (1 HSPs)
chr3 (10-301)||(44093373-44093669)


Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 10 - 301
Target Start/End: Complemental strand, 44093669 - 44093373
Alignment:
Q  10 attattctagaatgaaaattatgtgttagattacatgggatgannnnnnnagcaccaagttggttgccattttatatgttgcttttatcctgggtgtatg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44093669 attattctagaatgaaaattatgtgttagattacatgggatgatttttttagcaccaagttggttgccattttatatgttgcttttatcctgggtgtatg 44093570  T
Q  110 tatctcctgattctgaagtctttttacaaatttggtgtctgatcaacatttctcttctgcagttt-----gtaattatgccaatggacaatggtagatta 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||    
T  44093569 tatctcctgattctgaagtctttttacaaatttggtgtctgatcaacatttctcttctgcagtttaatttgtaattatgccaatggacaatggtagatta 44093470  T
Q  205 actactgcggacaaaaagagaccatgtattctgggtttggttgtaaacaatggttatccccaatgtggccatgtagacggacaaaacgagcagattt 301  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44093469 actactgcggacaaaaagagaccatgtattctgggtttggctgtaaacaatggttatccccaatgtggccatgtagacggacaaaacgagcagattt 44093373  T

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