View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6033_high_31 (Length: 254)
Name: NF6033_high_31
Description: NF6033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6033_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 44155363 - 44155585
Alignment:
| Q |
1 |
tatcgctgcattaagtgtttatgcttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaa |
100 |
Q |
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| T |
44155363 |
tatcgctgcattaagtgtttatgcttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaa |
44155462 |
T |
|
| Q |
101 |
ggagcagagtttttctattgaagccagtcaagttgtcaggtgtcaagtgcttgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagttt |
200 |
Q |
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| T |
44155463 |
ggagcagagtt------------ccagtcaagttgtcaggtgtcaagtgcttgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagttt |
44155550 |
T |
|
| Q |
201 |
tttgaaaagaatgcgatcatcagataagtgcagtt |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
44155551 |
tttgaaaagaatgcgatcatcagataagtgcagtt |
44155585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 5 - 133
Target Start/End: Complemental strand, 40894457 - 40894330
Alignment:
| Q |
5 |
gctgcattaagtgtttatgcttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaaggag |
104 |
Q |
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| T |
40894457 |
gctgcattaagtgtttatgcttttatgtggccaatatttctagtcatgcttcttaatagttttactctca--ctgatttgcaggtgcctggaggaaggag |
40894360 |
T |
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| Q |
105 |
caga-gtttttctattgaagccagtcaagt |
133 |
Q |
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| T |
40894359 |
cagaggtttttctattgaagccagtcaagt |
40894330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 44214434 - 44214638
Alignment:
| Q |
20 |
tatgcttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaaggagcagagt-ttttctat |
118 |
Q |
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|||||| ||| |||||| |||| || |||||||||||||||||||||| | ||||| |||||||||||| ||||||||||||||||| |||| | | |
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| T |
44214434 |
tatgctattaggtggccagtatatcctgtcctgcttcttaatagttttattttcacta--atttgcaggtgtttggaggaaggagcagaggattttttgt |
44214531 |
T |
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| Q |
119 |
tgaagccagtcaagttgtcaggtgtcaagtgcttgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagttttttgaaaagaatgcgatc |
218 |
Q |
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| ||||||||||| ||||||| ||| | || ||||||| ||||||||||||||||||||||| | ||| ||| || ||| | | |||||||||||||| |
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| T |
44214532 |
taaagccagtcaaattgtcagatgtaagacgcctgaaagatttcatcatgagaggtgaagtgaaggatggcgagaaatgttctctcaaaagaatgcgatc |
44214631 |
T |
|
| Q |
219 |
atcagat |
225 |
Q |
| |
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||||||| |
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| T |
44214632 |
atcagat |
44214638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 40894326 - 40894279
Alignment:
| Q |
152 |
tgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagtt |
199 |
Q |
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||||||| |||||||||||||||||||| |||| ||||||| |||||| |
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| T |
40894326 |
tgaaagatttcatcatgagaggtgaagtaaaagatggtgagaaaagtt |
40894279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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