View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6033_high_42 (Length: 238)
Name: NF6033_high_42
Description: NF6033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6033_high_42 |
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Alignment Details
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 6 - 88
Target Start/End: Complemental strand, 975639 - 975557
Alignment:
| Q |
6 |
aaaaaataaacatcatttcatctaatttattatttgatttcatctacaacaagaaatggctttcaatgcagcggtaaaaaaca |
88 |
Q |
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| T |
975639 |
aaaaaataaacatcatttcatctaatttattatttgatttcatctacaacaagaaatggctttcaatgcagcggtaaaaaaca |
975557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 975501 - 975423
Alignment:
| Q |
144 |
cattattacttctatgataaatacactattaattcttgtagaaaacaaaatatgttgatgcattgattcaagacaaaag |
222 |
Q |
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| T |
975501 |
cattattacttctatgataaatacactattaattcttgtagaaaacaaaatatgttgatgcattgattcaagacaaaag |
975423 |
T |
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