View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6033_high_44 (Length: 234)
Name: NF6033_high_44
Description: NF6033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6033_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 99 - 219
Target Start/End: Complemental strand, 38406840 - 38406720
Alignment:
| Q |
99 |
taaacttgtaaaattgtatatggaatatggattcatttgaagcggttaatatgaattgacacaattttatcatcaatgtctcaaatgcactatgtttatt |
198 |
Q |
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| T |
38406840 |
taaacttgtaaaattgtatatggaatatggattcatttgaagcggttaatatgaattgacacaattttatcatcaatgtctcaaatgcactatgtttatt |
38406741 |
T |
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| Q |
199 |
agtggaatgtggtttatcaat |
219 |
Q |
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| T |
38406740 |
agtggaatgtggtttatcaat |
38406720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 38406963 - 38406865
Alignment:
| Q |
1 |
tatacggcctaccttttctcttcgtttcagacaccatgattttggatatctccaactcatcatagatctcccactctctccatttctaaattaaacgtt |
99 |
Q |
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| T |
38406963 |
tatacggcctaccttttctcttcgtttcagacaccatgattttggatatctccaactcatcatagatctcccactctctccatttctaaattaaacgtt |
38406865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 38428719 - 38428635
Alignment:
| Q |
6 |
ggcctaccttttctcttcgtttcagacaccatgattttggatatctccaactcatcatagatctcccactctctccatttctaaa |
90 |
Q |
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| T |
38428719 |
ggcctagcttttctcttcggttcatacaccatggttttggatatcttttactcatcataaatatcctactctctccatatctaaa |
38428635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 38428388 - 38428347
Alignment:
| Q |
178 |
ctcaaatgcactatgtttattagtggaatgtggtttatcaat |
219 |
Q |
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| T |
38428388 |
ctcaaatgcactatgtttattagtggaatgtagtttatcaat |
38428347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 28316758 - 28316679
Alignment:
| Q |
9 |
ctaccttttctcttcgtttcagacaccatgattttggatatctccaactcatcatagatctcccactctctccatttctaa |
89 |
Q |
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| T |
28316758 |
ctacctcttctcttcgattcatacaccatggttt-ggatatctccaactcatcataaatctcccaatgtctccatatctaa |
28316679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 28316646 - 28316589
Alignment:
| Q |
102 |
acttgtaaaattgtatatggaatatggattcatttgaagcggttaatatgaattgacac |
160 |
Q |
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| T |
28316646 |
acttgtgaaattgcatatggaatatt-attcatttgaagtgattaatatgaattgacac |
28316589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 156
Target Start/End: Complemental strand, 13185408 - 13185360
Alignment:
| Q |
109 |
aaattgtatatggaatatgga-ttcatttgaagcggttaatatgaattg |
156 |
Q |
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| T |
13185408 |
aaattgtatatggaatatggatttcatttgaagcaattaatatgaattg |
13185360 |
T |
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