View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6033_high_5 (Length: 483)
Name: NF6033_high_5
Description: NF6033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6033_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 430; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 19 - 476
Target Start/End: Complemental strand, 32628239 - 32627782
Alignment:
| Q |
19 |
aaagttttagtgttgttgcatgctcaaagctgaatttaaatccaactaaactaagttaatatgagatcaaagaagctcatagttgtaattagaaaaatgt |
118 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32628239 |
aaagttttagcgttgttgcatgctcaaagctgaattcaaattcaactaaactaagttaatatgagatcaaagaagctcatagttgtaattagaaaaatgt |
32628140 |
T |
|
| Q |
119 |
acttgttttcttctaattttatgtgccgattgcatgtatacagcgaaaggtaatatatttgacaaaacctttgagagatgaagccataaccagcatgtac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32628139 |
acttgttttcttctaattttatgtgccgatttcatgtatacagcgaaaggtaatatatttgacaaaacctttgagagatgaagccataaccagcatgtac |
32628040 |
T |
|
| Q |
219 |
aacaacacactctccaaaagcttgacaattgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32628039 |
aacaacacactctccaaaagcttgacaattgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaa |
32627940 |
T |
|
| Q |
319 |
agctttgtcgaaaacttaatcataaatctcccgaatatatgatatttttgaacgatctaccgggaaatgacttcaacaccatatttaagtcccttgacat |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
32627939 |
agctttgtcgaaaacttaatcataaatctcccgaatatatgatatatttgaacgatctaccgggaaatgacttcaacaccatatttacgtcccttgacat |
32627840 |
T |
|
| Q |
419 |
tttcaaagaaaaactacttgaagaaatggggactgaaatgggtccatgcttcttctca |
476 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32627839 |
tttcaaagaaaaactacttgatgaaatggggactgaaatgggtccatgcttcttctca |
32627782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 155 - 435
Target Start/End: Complemental strand, 32704331 - 32704047
Alignment:
| Q |
155 |
tatacagcgaaaggtaatatatttgacaaaacctttgagagatgaagccataaccagcatgtacaacaacacactctccaaaagcttgacaattgcagac |
254 |
Q |
| |
|
|||| |||||||||| || | ||||||||||| ||||||||| ||||||||||| | ||||||||| || |||||| ||| ||||||| |||||||||| |
|
|
| T |
32704331 |
tatatagcgaaaggtgatttctttgacaaaacttttgagagaagaagccataacaaacatgtacaataaaacactccccataagcttggcaattgcagat |
32704232 |
T |
|
| Q |
255 |
ttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatctcccgaat |
354 |
Q |
| |
|
|| |||||||||| |||| ||||||||||||||| ||||| ||||| |||||| |||||||||||| |||||||| | ||||||||||||||||| |||| |
|
|
| T |
32704231 |
ttgggttgctcttatggaccaaacactttgttggcgatctcagatactatcaaggttgtggaaaagatttgtcgagagcttaatcataaatctcctgaat |
32704132 |
T |
|
| Q |
355 |
atat----gatatttttgaacgatctaccgggaaatgacttcaacaccatatttaagtcccttgacattttcaaagaaaaactac |
435 |
Q |
| |
|
|||| | | ||||||||||||||||| || || |||||||||| |||||| |||||| |||| ||||||||||| |||| |
|
|
| T |
32704131 |
atatataaggtctttttgaacgatctaccagggaacgacttcaacaatgtatttaggtccctcgacacgttcaaagaaaatctac |
32704047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 192 - 417
Target Start/End: Complemental strand, 7298225 - 7298000
Alignment:
| Q |
192 |
agagatgaagccataaccagcatgtacaacaacacactctccaaaagcttgacaattgcagacttaggttgctcttctggatcaaacactttgttggtga |
291 |
Q |
| |
|
||||||||||||||||| ||| | ||| ||| ||||| | ||||||| | |||||||||| |||||||| ||||||||| ||||||||||||| ||| |
|
|
| T |
7298225 |
agagatgaagccataacaagcctctactccaaaacacttttcaaaagccttgcaattgcagatttaggttgttcttctggaccaaacactttgtttgtgg |
7298126 |
T |
|
| Q |
292 |
tcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatctcccgaatatatgatatttttgaacgatctaccgggaaatgactt |
391 |
Q |
| |
|
| | ||||||||||| |||||||| |||||||| | | || | || ||| ||||||||| || | ||||||||| || ||| | | ||||||||||| |
|
|
| T |
7298125 |
tatcagatattatcatggttgtggagaagctttgccaacaattgaaccattcatctcccgagtacaagatattttttaatgatgtttctggaaatgactt |
7298026 |
T |
|
| Q |
392 |
caacaccatatttaagtcccttgaca |
417 |
Q |
| |
|
||||| |||||||||||| ||||||| |
|
|
| T |
7298025 |
caacaacatatttaagtcacttgaca |
7298000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 244 - 394
Target Start/End: Complemental strand, 32709952 - 32709802
Alignment:
| Q |
244 |
caattgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataa |
343 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||| | | ||| ||||||| || |||||||||||||||||| | | |||||| | |
|
|
| T |
32709952 |
caattgcagacttgggttgctcttctgggccaaacactttgttggtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttgaatcatga |
32709853 |
T |
|
| Q |
344 |
atctcccgaatatatgatatttttgaacgatctaccgggaaatgacttcaa |
394 |
Q |
| |
|
|||||||||||| | | | || ||||||||| | ||||| || |||||||| |
|
|
| T |
32709852 |
atctcccgaatacaaggtcttcttgaacgatttgccgggtaacgacttcaa |
32709802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 445
Target Start/End: Complemental strand, 7293599 - 7293498
Alignment:
| Q |
344 |
atctcccgaatatatgatatttttgaacgatctaccgggaaatgacttcaacaccatatttaagtcccttgacattttcaaagaaaaactacttgaagaa |
443 |
Q |
| |
|
|||||||||||| | ||| ||||| |||||||| | || ||||||||||||| ||| |||||||| ||||| | || ||| | ||||||||||| ||| |
|
|
| T |
7293599 |
atctcccgaatacaagatcttttttaacgatctttcagggaatgacttcaacaacatttttaagtcacttgatagctttaaacataaactacttgatgaa |
7293500 |
T |
|
| Q |
444 |
at |
445 |
Q |
| |
|
|| |
|
|
| T |
7293499 |
at |
7293498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 4e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 155 - 475
Target Start/End: Complemental strand, 5811748 - 5811428
Alignment:
| Q |
155 |
tatacagcgaaaggtaatatatttgacaaaacctttgagagatgaagccataaccagcatgtacaacaacacactctccaaaagcttgacaattgcagac |
254 |
Q |
| |
|
||||||||||||||| || | |||||||||| |||||||||| ||||| |||||||| | ||| ||||||||| | | ||||||| ||||||||||| |
|
|
| T |
5811748 |
tatacagcgaaaggtgatttctttgacaaaatctttgagagacgaagctataaccagtctatactgcaacacacttcctagaagcttggcaattgcagac |
5811649 |
T |
|
| Q |
255 |
ttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatctcccgaat |
354 |
Q |
| |
|
|| |||||||||| |||| |||||||||| |||||||||| || |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5811648 |
ttgggttgctcttttggaccaaacactttcttggtgatctctgaaattatcaaggttgttgaaaagctttgtcgagaacttaatcataaatctcccgaat |
5811549 |
T |
|
| Q |
355 |
atatgatatttttgaacgatctaccgggaaatgacttcaacaccatatttaagtcccttgacattttcaaagaaaaactacttgaagaaatggggactga |
454 |
Q |
| |
|
||| | |||||||||||||||||||||||||| |||||| | |||||| ||||||||||| |||||||||||||||| | | ||||||| ||||| |
|
|
| T |
5811548 |
ataaagtctttttgaacgatctaccgggaaatgatttcaacgacgtatttatgtcccttgacaccttcaaagaaaaactacgtaatgaaatggaaactga |
5811449 |
T |
|
| Q |
455 |
aatgggtccatgcttcttctc |
475 |
Q |
| |
|
||||||||| |||| |||||| |
|
|
| T |
5811448 |
aatgggtccttgctacttctc |
5811428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 155 - 447
Target Start/End: Complemental strand, 27737067 - 27736775
Alignment:
| Q |
155 |
tatacagcgaaaggtaatatatttgacaaaacctttgagagatgaagccataaccagcatgtacaacaacacactctccaaaagcttgacaattgcagac |
254 |
Q |
| |
|
||||||||||||||| || | ||| ||||||||||||||||| ||||| ||||||| | | || ||||||||| ||| ||||||| ||||||||||| |
|
|
| T |
27737067 |
tatacagcgaaaggtgatttctttaacaaaacctttgagagacgaagctataaccaacctatattgcaacacacttcccagaagcttggcaattgcagac |
27736968 |
T |
|
| Q |
255 |
ttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatctcccgaat |
354 |
Q |
| |
|
|| |||||||||| ||| |||||||| |||||||||| | ||| |||||||||| ||||||||| ||||||| | | | ||||||||||||| |||| |
|
|
| T |
27736967 |
ttgggttgctcttttgggccaaacactatgttggtgatatcagaaattatcaaaggtgtggaaaaactttgtcaagtgcatcatcataaatctcctgaat |
27736868 |
T |
|
| Q |
355 |
atatgatatttttgaacgatctaccgggaaatgacttcaacaccatatttaagtcccttgacattttcaaagaaaaactacttgaagaaatgg |
447 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||||||| | |||| ||||||||||||| |||||||| ||||||| ||| ||||||| |
|
|
| T |
27736867 |
ataaagtatttttgaatgatctaccgggaaatgacttcaacaacgtattcaagtcccttgacaccttcaaagagaaactacgtgatgaaatgg |
27736775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 247 - 430
Target Start/End: Original strand, 20115800 - 20115983
Alignment:
| Q |
247 |
ttgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatc |
346 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||| ||||||||||||| ||| |||||||| |||||||||||||||||| | || | |||||| |||| |
|
|
| T |
20115800 |
ttgcagacttaggttgctcttcaggaccaaacaccttgttggtgatctcagaaattatcaaggttgtggaaaagctttgtatagaattgaatcatgaatc |
20115899 |
T |
|
| Q |
347 |
tcccgaatat-atgatatttttgaacgatctaccgggaaatgacttcaacaccatatttaagtcccttgacattttcaaagaaaa |
430 |
Q |
| |
|
||| |||||| ||| | | ||||||||||||| | ||||| ||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
20115900 |
tcctgaatatgatg-tctctttgaacgatctatccggaaacgacttcaacggcatatttaagtcccttgacaccttcaaagaaaa |
20115983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 247 - 433
Target Start/End: Complemental strand, 21943859 - 21943673
Alignment:
| Q |
247 |
ttgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatc |
346 |
Q |
| |
|
|||||||||| ||||| ||||||||| ||| |||||||||||||||| || ||||| || ||||||||||||||||||| | | | |||||| |||| |
|
|
| T |
21943859 |
ttgcagacttgggttgttcttctggactaaatactttgttggtgatctcggagattataaatgttgtggaaaagctttgtcaagagttgaatcatgaatc |
21943760 |
T |
|
| Q |
347 |
tcccgaatatatgatatttttgaacgatctaccgggaaatgacttcaacaccatatttaagtcccttgacattttcaaagaaaaact |
433 |
Q |
| |
|
||||||||||| | ||||||||||||||||||| ||||| || ||||||| | |||||| ||||||||| | |||||||||||||| |
|
|
| T |
21943759 |
tcccgaatataaggtatttttgaacgatctacccggaaacgatttcaacaacgtatttaggtcccttgagaccttcaaagaaaaact |
21943673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 32534158 - 32534116
Alignment:
| Q |
21 |
agttttagtgttgttgcatgctcaaagctgaatttaaatccaa |
63 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
32534158 |
agttttaacgttgttgcatgctcaaagctgaatttgaatccaa |
32534116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University