View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6033_high_6 (Length: 471)
Name: NF6033_high_6
Description: NF6033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6033_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 51548008 - 51548462
Alignment:
| Q |
1 |
agcagttgcattaagagtgaatgcagacgtaacagctttttacaaatgtgcaatgtatggttaccaagacacactttatgttcactcatttagacaattc |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51548008 |
agcagttgcattaagagtgaacgcagacgtaacagctttttacaaatgtgcaatgtatggttaccaagacacactttatgttcactcatttagacaattc |
51548107 |
T |
|
| Q |
101 |
tatagagagtgtgatatttttgggaccatagattacatatttggaaatgcagcagtagttttacaagcatgtaatattatatcaagaatgccattaccta |
200 |
Q |
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| T |
51548108 |
tatagagagtgtgacatttttgggaccatagattacatatttggaaatgcagcagtagttttacaagcatgtaacattatatcaagaatgccattaccta |
51548207 |
T |
|
| Q |
201 |
accaatacactgtcatcactgcacagtcaagagattcacctgatgaagacactggcatctcaatccaaaactgttcaattttagctactactgatttgta |
300 |
Q |
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| T |
51548208 |
accaatacactgtaatcactgcacagtcaagagattcacctgatgaagacactggcatctcaatccaaaactgttcaattttagctactactgatttgta |
51548307 |
T |
|
| Q |
301 |
taacaactctaacaacatcaagagttaccttggaaggccttggagggtttattctaggactgttttcattgagtcttacattgatgtgttcattgatcca |
400 |
Q |
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| T |
51548308 |
taacaactataacaacatcaagagttaccttggaaggccttggagggtttattctaggactgttttcattgagtcttacattgatgtgttcattgatcca |
51548407 |
T |
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| Q |
401 |
atgggatggacgaaatggtcttctgatgatgataaagggttggacactttgtatt |
455 |
Q |
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| T |
51548408 |
atgggatggacgaaatggtcttctgatgatgataaagggttggacactttgtatt |
51548462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 19476441 - 19476860
Alignment:
| Q |
1 |
agcagttgcattaagagtgaatgcagacgtaacagctttttacaaatgtgcaatgtatggttaccaagacacactttatgttcactcatttagacaattc |
100 |
Q |
| |
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|||||||||||||||||| |||||||| ||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
19476441 |
agcagttgcattaagagtaaatgcagatttaacagcattttacaaatgcgcaatttatggttaccaagacacactttatgtccactcattcagacaattc |
19476540 |
T |
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| Q |
101 |
tatagagagtgtgatatttttgggaccatagattacatatttggaaatgcagcagtagttttacaagcatgtaatattatatcaagaatgccattaccta |
200 |
Q |
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|| | || || || |||| ||||| ||||||| ||||||||| || || |||||||| ||||||| ||| | || |||||||||||||||||||| |
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| T |
19476541 |
taccgcgaatgcgacatttacgggacaatagatttcatatttggtaacgccgcagtagtattacaagaatgcgacatcgtatcaagaatgccattacctg |
19476640 |
T |
|
| Q |
201 |
accaatacactgtcatcactgcacagtcaagagattcacctgatgaagacactggcatctcaatccaaaactgttcaattttagctactactgatttgta |
300 |
Q |
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|||| || || || || || || ||| | ||| ||||| |||||||| || || ||||||||||| ||||| ||| | ||||| ||| | || |
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| T |
19476641 |
gtcaatttacagttataaccgcgcaatcacgggataaccctgacgaagacacgggaatttcaatccaaaattgttcgattatcgctacggatgagcttta |
19476740 |
T |
|
| Q |
301 |
taacaactctaacaacatcaagagttaccttggaaggccttggagggtttattctaggactgttttcattgagtcttacattgatgtgttcattgatcca |
400 |
Q |
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| ||||||| || |||||||||||||||| ||||| |||||||||| |||||| || ||||| ||||||||||| ||||||| || ||||||| | |
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| T |
19476741 |
ttcaaactctagtaaggtcaagagttaccttgggaggccgtggagggttttttctagaacggttttaattgagtcttatattgatgattttattgatcaa |
19476840 |
T |
|
| Q |
401 |
atgggatggacgaaatggtc |
420 |
Q |
| |
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| ||| ||||| |||||||| |
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|
| T |
19476841 |
aagggttggaccaaatggtc |
19476860 |
T |
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