View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6033_high_7 (Length: 471)
Name: NF6033_high_7
Description: NF6033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6033_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 78 - 454
Target Start/End: Complemental strand, 20271852 - 20271476
Alignment:
| Q |
78 |
cgggggaacagttaaggggttattttagcagtttgggaaagaaggggaggttgttgaattttcttggtctggttgttttataatttcttgtactgatcac |
177 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
20271852 |
cgggggaacagttaagggattattttagcagtttgggaaagaaggggaggttgttgaattttcttggtctggtggtttactaatttcttgtactgatcac |
20271753 |
T |
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| Q |
178 |
tattttcagttataatatgtattacaatgtctgtccatccaattcacacttttatttactataattgttctacggtttctattggtggatgggaacatag |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20271752 |
tattttcagttataatatgtattacaatgtctgtccatccaattcacacttttatttactataattgttctacggtttctattggtggatgggaacatag |
20271653 |
T |
|
| Q |
278 |
cagccacatacatcgacaattaattcgtcttccaccataccaacataggtaacattcacatttttcagagttacagcaggaatgtggtgatcacaaacaa |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20271652 |
cagccacatacatcgacaattaattcgtcttccaccataccaacataggtaacattcacatttttcagagttacagcaggaatgtggtgatcacaaacaa |
20271553 |
T |
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| Q |
378 |
acatgaatgtgtttagaaatgaagatacaaattaagtaaggtgagtgttttattgtcataaattataatcatacata |
454 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20271552 |
acatgaatgtgtttagaaatgaagatacaaattaagtaaggtgagtgttttattgtcataaattataatcatacata |
20271476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 78 - 454
Target Start/End: Complemental strand, 21058480 - 21058104
Alignment:
| Q |
78 |
cgggggaacagttaaggggttattttagcagtttgggaaagaaggggaggttgttgaattttcttggtctggttgttttataatttcttgtactgatcac |
177 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
21058480 |
cgggggaacagttaagggattattttagcagtttgggaaagaaggggaggttgttgaattttcttggtctggtggtttactaatttcttgtactgatcac |
21058381 |
T |
|
| Q |
178 |
tattttcagttataatatgtattacaatgtctgtccatccaattcacacttttatttactataattgttctacggtttctattggtggatgggaacatag |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21058380 |
tattttcagttataatatgtattacaatgtctgtccatccaattcacacttttatttactataattgttctacggtttctattggtggatgggaacatag |
21058281 |
T |
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| Q |
278 |
cagccacatacatcgacaattaattcgtcttccaccataccaacataggtaacattcacatttttcagagttacagcaggaatgtggtgatcacaaacaa |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21058280 |
cagccacatacatcgacaattaattcgtcttccaccataccaacataggtaacattcacatttttcagagttacagcaggaatgtggtgatcacaaacaa |
21058181 |
T |
|
| Q |
378 |
acatgaatgtgtttagaaatgaagatacaaattaagtaaggtgagtgttttattgtcataaattataatcatacata |
454 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21058180 |
acatgaatgtgtttagaaatgaagatacaaattaagtaaggtgagtgttttattgtcataaattataatcatacata |
21058104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 20271969 - 20271899
Alignment:
| Q |
9 |
agcataggtcagaattcaatagggctgccatatggagagtatattcaacgaaaaagaaagtggacccagcg |
79 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
20271969 |
agcataggtcagaattcaatagggctgccatatggagagtatattcaacgaaaaagaaaatggacccagcg |
20271899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 21058597 - 21058527
Alignment:
| Q |
9 |
agcataggtcagaattcaatagggctgccatatggagagtatattcaacgaaaaagaaagtggacccagcg |
79 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
21058597 |
agcataggtcagaattcaatagggctgccatatggagagtatattcaacgaaaaagaaaatggacccagcg |
21058527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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