View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6033_low_1 (Length: 922)

Name: NF6033_low_1
Description: NF6033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6033_low_1
NF6033_low_1
[»] chr4 (9 HSPs)
chr4 (383-910)||(53214124-53214654)
chr4 (19-201)||(53213936-53214118)
chr4 (552-653)||(4710288-4710390)
chr4 (551-624)||(42451827-42451901)
chr4 (604-641)||(16936094-16936131)
chr4 (710-784)||(11181475-11181549)
chr4 (729-779)||(27059341-27059391)
chr4 (758-807)||(9074413-9074462)
chr4 (766-823)||(29152290-29152347)
[»] chr7 (7 HSPs)
chr7 (58-206)||(45476656-45476804)
chr7 (567-689)||(15328843-15328966)
chr7 (604-636)||(16488185-16488217)
chr7 (567-670)||(36645061-36645165)
chr7 (552-619)||(48582278-48582346)
chr7 (546-604)||(37254022-37254079)
chr7 (610-640)||(42629204-42629234)
[»] chr8 (15 HSPs)
chr8 (606-690)||(24190891-24190975)
chr8 (708-808)||(17018577-17018676)
chr8 (708-808)||(17549014-17549113)
chr8 (604-640)||(39872185-39872221)
chr8 (567-636)||(5345311-5345380)
chr8 (719-795)||(2287709-2287785)
chr8 (604-640)||(7130619-7130655)
chr8 (604-640)||(17944828-17944864)
chr8 (544-604)||(28009227-28009287)
chr8 (544-604)||(28066530-28066590)
chr8 (551-624)||(41130732-41130805)
chr8 (710-791)||(12733599-12733680)
chr8 (543-604)||(28008601-28008662)
chr8 (543-604)||(28065904-28065965)
chr8 (604-641)||(42431689-42431726)
[»] chr1 (3 HSPs)
chr1 (575-678)||(46150397-46150501)
chr1 (746-809)||(32979388-32979450)
chr1 (708-802)||(7492615-7492709)
[»] chr2 (7 HSPs)
chr2 (551-685)||(26424917-26425052)
chr2 (604-639)||(38571671-38571706)
chr2 (604-677)||(6858689-6858762)
chr2 (605-640)||(3816313-3816348)
chr2 (658-700)||(6858711-6858753)
chr2 (567-624)||(6858766-6858824)
chr2 (611-640)||(304343-304372)
[»] chr5 (4 HSPs)
chr5 (552-685)||(5655261-5655395)
chr5 (604-640)||(25868123-25868159)
chr5 (604-641)||(14410768-14410805)
chr5 (604-640)||(25994946-25994982)
[»] scaffold0007 (1 HSPs)
scaffold0007 (604-640)||(186963-186999)
[»] chr6 (3 HSPs)
chr6 (762-813)||(9437516-9437567)
chr6 (729-796)||(32427760-32427827)
chr6 (761-808)||(33680732-33680779)
[»] chr3 (4 HSPs)
chr3 (605-640)||(53038903-53038938)
chr3 (759-797)||(26719526-26719564)
chr3 (756-809)||(26741017-26741070)
chr3 (567-604)||(38810084-38810121)


Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 383 - 910
Target Start/End: Original strand, 53214124 - 53214654
Alignment:
Q  383 caacagttaactatcggagtgccggagagcaaataatgaagtttaaagagcatttttcaaatatttataaaatttatggatcatagcaacttaagnnnnn 482  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  53214124 caacagttaactatcggagtgccggagagcaaataatgaagtataaagagcatttttcaaatatttataaaatttatggatcatagcaacttaagaaaaa 53214223  T
Q  483 nnnntatgaacgggtcttgaaccctttcattgacnnnnnnnngttatgggccctttattcttagaaaaatgctctcctccgatgaaaaattgttcgctcc 582  Q
        ||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||| || |||||||| |||||||    
T  53214224 aaa-tatgaacgggtcttgaaccctttcattgacaaaaaaaagttatgggccctttattcttagaaaaatgctctcctcccatcaaaaattgctcgctcc 53214322  T
Q  583 caactaaactttcgaaaataccatgtgtgacttaagtc--acgctgcatgagttaactcattctggttataaatcttgtgtgagttaacttacgtaggtt 680  Q
    |||||||||||||||||||| |||| ||||||||||||  ||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||    
T  53214323 caactaaactttcgaaaatatcatgcgtgacttaagtctcacgctgcatgagttaactcatactggttataaatcctgtgtgagttaactcacgtaggtt 53214422  T
Q  681 ataaaccctgtgtgagttaaaccaaa--taccaatttatagaaggttctatgcgtcgtggaccatataaactattgatgcaatgtggaccacagaaaaat 778  Q
    ||||||| || |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53214423 ataaaccatgcgtgagttaaaccaaacataccaatttatagaaggttctatgcgtcgtggaccatataaactattgatgcaatgtggaccacagaaaaat 53214522  T
Q  779 cttgtatttgactggttcagattaaataatccaaaatatgacaaaaccctcaatgcagaagtttttgcacattcttgacatgttttagatgtaatgatct 878  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  53214523 cttgtatttgactgattcagattaaataatccaaaatatgacaaaaccctcaatgcagaagtttttgcacattcttgacatgtttcagatgtaatgatct 53214622  T
Q  879 gaaccactaaaatattgtttatggattatatt 910  Q
    ||||||||||||||||||||||||||||||||    
T  53214623 gaaccactaaaatattgtttatggattatatt 53214654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 53213936 - 53214118
Alignment:
Q  19 ataggagccttaaccaagatttatttgtagccatactcggtgttatgtaaacctgtttgaaaaccttgtcgttgggaggatgatggtgtaacataatcag 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  53213936 ataggagccttaaccaagatttatttgtagccatactcggtgttatgtaaacctgtttgaaaaccttgtcgtagggaggatgatggtgtaacataatcag 53214035  T
Q  119 aagttgcgtctttagaaaaaccactcttcccgcttcctcaaaacacatggaaaagcaactaccattcattaggacattgagca 201  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53214036 aagttgtgtctttagaaaaaccactcttcccgcttcctcaaaacacatggaaaagcaactaccattcattaggacattgagca 53214118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 552 - 653
Target Start/End: Original strand, 4710288 - 4710390
Alignment:
Q  552 tgctctcctccgatgaaaaattgttcgctcccaactaaactttcgaaaatac-catgtgtgacttaagtcacgctgcatgagttaactcattctggttat 650  Q
    |||||| |||| || |||||||| ||||||||||| ||||||| |||||||| |||| ||||||||||||||  | | ||||||||||||| | ||||||    
T  4710288 tgctcttctcccataaaaaattgctcgctcccaaccaaacttttgaaaatactcatgcgtgacttaagtcacattacgtgagttaactcataccggttat 4710387  T
Q  651 aaa 653  Q
    |||    
T  4710388 aaa 4710390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 551 - 624
Target Start/End: Original strand, 42451827 - 42451901
Alignment:
Q  551 atgctctcctccgatgaaaaattgttcgctcccaactaaactttcgaaaatac-catgtgtgacttaagtcacgc 624  Q
    ||||||| |||| || |||||||| | ||||||||| |||||||||||||||| |||||||||||||||||||||    
T  42451827 atgctcttctcccataaaaaattgcttgctcccaaccaaactttcgaaaatactcatgtgtgacttaagtcacgc 42451901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 604 - 641
Target Start/End: Complemental strand, 16936131 - 16936094
Alignment:
Q  604 catgtgtgacttaagtcacgctgcatgagttaactcat 641  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  16936131 catgtgtgacttaagtcacgccgcatgagttaactcat 16936094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 710 - 784
Target Start/End: Complemental strand, 11181549 - 11181475
Alignment:
Q  710 caatttatagaaggttctatgcgtcgtggaccatataaactattgatgcaatgtggaccacagaaaaatcttgta 784  Q
    ||||||||||||| || |||||||| || | |||| ||||||||  ||| |||||||||| | ||||||||||||    
T  11181549 caatttatagaagtttttatgcgtcatgcatcatagaaactattagtgcgatgtggaccatacaaaaatcttgta 11181475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 729 - 779
Target Start/End: Complemental strand, 27059391 - 27059341
Alignment:
Q  729 tgcgtcgtggaccatataaactattgatgcaatgtggaccacagaaaaatc 779  Q
    |||||||||||||| ||||||| | | |||||||||||||| |||||||||    
T  27059391 tgcgtcgtggaccacataaactgtcggtgcaatgtggaccatagaaaaatc 27059341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 807
Target Start/End: Original strand, 9074413 - 9074462
Alignment:
Q  758 caatgtggaccacagaaaaatcttgtatttgactggttcagattaaataa 807  Q
    |||||||||||||| |||||||||||||||||| | ||| ||||| ||||    
T  9074413 caatgtggaccacataaaaatcttgtatttgacagattcggattatataa 9074462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 766 - 823
Target Start/End: Original strand, 29152290 - 29152347
Alignment:
Q  766 accacagaaaaatcttgtatttgactggttcagattaaataatccaaaatatgacaaa 823  Q
    |||||| ||||| ||| ||||||||||||||| ||||||||||   ||||||||||||    
T  29152290 accacaaaaaaaccttatatttgactggttcatattaaataatatgaaatatgacaaa 29152347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 3e-26; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 58 - 206
Target Start/End: Complemental strand, 45476804 - 45476656
Alignment:
Q  58 gtgttatgtaaacctgtttgaaaaccttgtcgtt-gggaggatgatggtgtaacataatcagaagttgcgtctttagaaaaaccactcttcccgcttcct 156  Q
    ||||||||||||||||||||||||| || || |  ||||||| |||||||||| |  ||||||||||| |||||||||||||| ||||  | || |||||    
T  45476804 gtgttatgtaaacctgtttgaaaacttt-tcttcagggaggaggatggtgtaataccatcagaagttgtgtctttagaaaaactactcgacgcggttcct 45476706  T
Q  157 caaaacacatggaaaagcaactaccattcattaggacattgagcaataaa 206  Q
    ||||| |||||||||||||||||||||||| | | | |||||||||||||    
T  45476705 caaaatacatggaaaagcaactaccattcactggaatattgagcaataaa 45476656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 567 - 689
Target Start/End: Original strand, 15328843 - 15328966
Alignment:
Q  567 aaaaattgttcgctcccaactaaactttcgaaaatac-catgtgtgacttaagtcacgctgcatgagttaactcattctggttataaatcttgtgtgagt 665  Q
    ||||||||||| |||||||| |||| ||||||||||  | ||  |||||||||| |||||| |||| |||| |||| ||||||||||||| ||  |||||    
T  15328843 aaaaattgttcactcccaaccaaacattcgaaaatattcttgcatgacttaagttacgctgtatgaattaattcatgctggttataaatcctgcttgagt 15328942  T
Q  666 taacttacgtaggttataaaccct 689  Q
    ||||| | ||||||||||||||||    
T  15328943 taactcatgtaggttataaaccct 15328966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 604 - 636
Target Start/End: Complemental strand, 16488217 - 16488185
Alignment:
Q  604 catgtgtgacttaagtcacgctgcatgagttaa 636  Q
    |||||||||||||||||||||||||||||||||    
T  16488217 catgtgtgacttaagtcacgctgcatgagttaa 16488185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 567 - 670
Target Start/End: Original strand, 36645061 - 36645165
Alignment:
Q  567 aaaaattgttcgctcccaactaaactttcgaaaata-ccatgtgtgacttaagtcacgctgcatgagttaactcattctggttataaatcttgtgtgagt 665  Q
    |||||||| ||||||||||| |||||| |||||||| || || |||| ||| |||| | ||  ||||||||||||  | | |||||||||||| ||||||    
T  36645061 aaaaattgctcgctcccaacgaaacttccgaaaatacccctgcgtgatttatgtcatgttgtgtgagttaactcacgccgattataaatcttgcgtgagt 36645160  T
Q  666 taact 670  Q
    |||||    
T  36645161 taact 36645165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 552 - 619
Target Start/End: Complemental strand, 48582346 - 48582278
Alignment:
Q  552 tgctctcctccgatgaaaaattgttcgctcccaactaaactttcgaaaatacc-atgtgtgacttaagt 619  Q
    |||||| |||| || |||||||| | ||||||||| |||||||||||||||||  ||||||||||||||    
T  48582346 tgctcttctcccatcaaaaattgcttgctcccaaccaaactttcgaaaatacctttgtgtgacttaagt 48582278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 546 - 604
Target Start/End: Complemental strand, 37254079 - 37254022
Alignment:
Q  546 gaaaaatgctctcctccgatgaaaaattgttcgctcccaactaaactttcgaaaatacc 604  Q
    |||||||||||| |||| || |||||||| ||| ||||||||||||||| |||||||||    
T  37254079 gaaaaatgctcttctcccat-aaaaattgctcgatcccaactaaacttttgaaaatacc 37254022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 610 - 640
Target Start/End: Complemental strand, 42629234 - 42629204
Alignment:
Q  610 tgacttaagtcacgctgcatgagttaactca 640  Q
    |||||||||||||||||||||||||||||||    
T  42629234 tgacttaagtcacgctgcatgagttaactca 42629204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 6e-21; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 606 - 690
Target Start/End: Complemental strand, 24190975 - 24190891
Alignment:
Q  606 tgtgtgacttaagtcacgctgcatgagttaactcattctggttataaatcttgtgtgagttaacttacgtaggttataaaccctg 690  Q
    |||||||||||||||||||||| ||||||||||||  ||||||||||||| |  ||||||||||| | |||||||||||||||||    
T  24190975 tgtgtgacttaagtcacgctgcgtgagttaactcacgctggttataaatcatacgtgagttaactcatgtaggttataaaccctg 24190891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 708 - 808
Target Start/End: Complemental strand, 17018676 - 17018577
Alignment:
Q  708 accaatttatagaaggttctatgcgtcgtggaccatataaactattgatgcaatgtggaccacagaaaaatcttgtatttgactggttcagattaaataa 807  Q
    ||||||||||||||| |||  ||| |||||||||| ||||||  ||  |||||||||||||||| |||| || |||| ||||||||||||||||| ||||    
T  17018676 accaatttatagaag-ttcagtgcatcgtggaccacataaacatttagtgcaatgtggaccacaaaaaattcatgtacttgactggttcagattatataa 17018578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 708 - 808
Target Start/End: Complemental strand, 17549113 - 17549014
Alignment:
Q  708 accaatttatagaaggttctatgcgtcgtggaccatataaactattgatgcaatgtggaccacagaaaaatcttgtatttgactggttcagattaaataa 807  Q
    ||||||||||||||| |||  ||| |||||||||| ||||||  ||  |||||||||||||||| |||| || |||| ||||||||||||||||| ||||    
T  17549113 accaatttatagaag-ttcagtgcatcgtggaccacataaacatttagtgcaatgtggaccacaaaaaattcatgtacttgactggttcagattatataa 17549015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 604 - 640
Target Start/End: Complemental strand, 39872221 - 39872185
Alignment:
Q  604 catgtgtgacttaagtcacgctgcatgagttaactca 640  Q
    |||||||||||||||||||||||||||||||||||||    
T  39872221 catgtgtgacttaagtcacgctgcatgagttaactca 39872185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 567 - 636
Target Start/End: Original strand, 5345311 - 5345380
Alignment:
Q  567 aaaaattgttcgctcccaactaaactttcgaaaataccatgtgtgacttaagtcacgctgcatgagttaa 636  Q
    |||||||| ||||||||||  |||||| |||||| ||||||  |||||||||||||||||| | ||||||    
T  5345311 aaaaattgctcgctcccaatcaaacttccgaaaacaccatgcatgacttaagtcacgctgcgtaagttaa 5345380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 719 - 795
Target Start/End: Original strand, 2287709 - 2287785
Alignment:
Q  719 gaaggttctatgcgtcgtggaccatataaactattgatgcaatgtggaccacagaaaaatcttgtatttgactggtt 795  Q
    |||| |||| ||| |||||||||||||||| | | | || ||||||||||||||||||||| |||| |||| |||||    
T  2287709 gaagtttctttgcctcgtggaccatataaattgtcggtgtaatgtggaccacagaaaaatcatgtacttgattggtt 2287785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 604 - 640
Target Start/End: Complemental strand, 7130655 - 7130619
Alignment:
Q  604 catgtgtgacttaagtcacgctgcatgagttaactca 640  Q
    |||| ||||||||||||||||||||||||||||||||    
T  7130655 catgcgtgacttaagtcacgctgcatgagttaactca 7130619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 604 - 640
Target Start/End: Complemental strand, 17944864 - 17944828
Alignment:
Q  604 catgtgtgacttaagtcacgctgcatgagttaactca 640  Q
    |||||||||||||||| ||||||||||||||||||||    
T  17944864 catgtgtgacttaagtaacgctgcatgagttaactca 17944828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 544 - 604
Target Start/End: Complemental strand, 28009287 - 28009227
Alignment:
Q  544 tagaaaaatgctctcctccgatgaaaaattgttcgctcccaactaaactttcgaaaatacc 604  Q
    |||| ||||||||| |||| || |||||||| ||||||||||| |||||||| ||||||||    
T  28009287 tagagaaatgctcttctcccatcaaaaattgctcgctcccaaccaaactttcaaaaatacc 28009227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 544 - 604
Target Start/End: Complemental strand, 28066590 - 28066530
Alignment:
Q  544 tagaaaaatgctctcctccgatgaaaaattgttcgctcccaactaaactttcgaaaatacc 604  Q
    |||| ||||||||| |||| || |||||||| ||||||||||| |||||||| ||||||||    
T  28066590 tagagaaatgctcttctcccatcaaaaattgctcgctcccaaccaaactttcaaaaatacc 28066530  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 551 - 624
Target Start/End: Complemental strand, 41130805 - 41130732
Alignment:
Q  551 atgctctcctccgatgaaaaattgttcgctcccaactaaactttcgaaaata-ccatgtgtgacttaagtcacgc 624  Q
    ||||||| |||| || |||||||||||| ||||||| |||||| |||||||| ||||| || |||||||||||||    
T  41130805 atgctcttctcccataaaaaattgttcgttcccaac-aaacttccgaaaatacccatgcgtaacttaagtcacgc 41130732  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 791
Target Start/End: Original strand, 12733599 - 12733680
Alignment:
Q  710 caatttatagaaggttctatgcgtcgtggaccatataaactattgatgcaatgtggaccacagaaaaatcttgtatttgact 791  Q
    |||||||||||||||| | ||| || | || || ||||| | ||| ||||||||| |||||| |||||||||||| ||||||    
T  12733599 caatttatagaaggttatgtgcatcattgatcacataaattgttggtgcaatgtgtaccacataaaaatcttgtacttgact 12733680  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 604
Target Start/End: Original strand, 28008601 - 28008662
Alignment:
Q  543 ttagaaaaatgctctcctccgatgaaaaattgttcgctcccaactaaactttcgaaaatacc 604  Q
    ||||||||||||||| |||| || |||||||| ||| ||||||| |||||||  ||||||||    
T  28008601 ttagaaaaatgctcttctcccataaaaaattgctcgatcccaacaaaacttttaaaaatacc 28008662  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 604
Target Start/End: Original strand, 28065904 - 28065965
Alignment:
Q  543 ttagaaaaatgctctcctccgatgaaaaattgttcgctcccaactaaactttcgaaaatacc 604  Q
    ||||||||||||||| |||| || |||||||| ||| ||||||| |||||||  ||||||||    
T  28065904 ttagaaaaatgctcttctcccataaaaaattgctcgatcccaacaaaacttttaaaaatacc 28065965  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 604 - 641
Target Start/End: Original strand, 42431689 - 42431726
Alignment:
Q  604 catgtgtgacttaagtcacgctgcatgagttaactcat 641  Q
    |||| ||||||||||||| |||||||||||||||||||    
T  42431689 catgcgtgacttaagtcatgctgcatgagttaactcat 42431726  T

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Target: chr1 (Bit Score: 45; Significance: 4e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 575 - 678
Target Start/End: Complemental strand, 46150501 - 46150397
Alignment:
Q  575 ttcgctcccaactaaactttcgaaaatacca-tgtgtgacttaagtcacgctgcatgagttaactcattctggttataaatcttgtgtgagttaacttac 673  Q
    |||||||||||| |||||||  ||||||||| || || |||||||||||||||| ||||||||||||  |  ||||||||||||| |||| |||||| ||    
T  46150501 ttcgctcccaaccaaacttttaaaaataccaatgcgtcacttaagtcacgctgcgtgagttaactcacgcatgttataaatcttgcgtgaattaactcac 46150402  T
Q  674 gtagg 678  Q
    |||||    
T  46150401 gtagg 46150397  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 746 - 809
Target Start/End: Complemental strand, 32979450 - 32979388
Alignment:
Q  746 aaactattgatgcaatgtggaccacagaaaaatcttgtatttgactggttcagattaaataatc 809  Q
    ||||||| |||||||| |||| |||| |||| ||||||| ||||||||||||||||| ||||||    
T  32979450 aaactatcgatgcaatatggatcacataaaa-tcttgtacttgactggttcagattatataatc 32979388  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 708 - 802
Target Start/End: Complemental strand, 7492709 - 7492615
Alignment:
Q  708 accaatttatagaaggttctatgcgtcgtggaccatataaactattgatgcaatgtggaccacagaaaaatcttgtatttgactggttcagatta 802  Q
    ||||||||||||||| || | |||||||| ||||||||||| |   | |||||||| || || | |||||||||||| |||| |||||| |||||    
T  7492709 accaatttatagaagtttttgtgcgtcgtagaccatataaattgccggtgcaatgttgatcatataaaaatcttgtacttgaatggttccgatta 7492615  T

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Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 551 - 685
Target Start/End: Original strand, 26424917 - 26425052
Alignment:
Q  551 atgctctcctccgatgaaaaattgttcgctcccaactaaactttcgaaaatacca-tgtgtgacttaagtcacgctgcatgagttaactcattctggtta 649  Q
    ||||||| |||| || |||||||| ||||| | ||  |||||||||||||||||  || |||| ||||||||||| || |||||||||||   | |||||    
T  26424917 atgctcttctcctatcaaaaattggtcgcttctaatcaaactttcgaaaatacccctgcgtgatttaagtcacgccgcgtgagttaactcgcgcaggtta 26425016  T
Q  650 taaatcttgtgtgagttaacttacgtaggttataaa 685  Q
    |||| ||||  |||||||||| ||||||||||||||    
T  26425017 taaaccttgcttgagttaactcacgtaggttataaa 26425052  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 604 - 639
Target Start/End: Original strand, 38571671 - 38571706
Alignment:
Q  604 catgtgtgacttaagtcacgctgcatgagttaactc 639  Q
    ||||||||||||||||||||||||||||||||||||    
T  38571671 catgtgtgacttaagtcacgctgcatgagttaactc 38571706  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 604 - 677
Target Start/End: Original strand, 6858689 - 6858762
Alignment:
Q  604 catgtgtgacttaagtcacgctgcatgagttaactcattctggttataaatcttgtgtgagttaacttacgtag 677  Q
    ||||||||||||||||||||| |  ||||||||||||    ||||||||| |||| ||||||||||| ||||||    
T  6858689 catgtgtgacttaagtcacgcagtgtgagttaactcacgtaggttataaaccttgcgtgagttaactcacgtag 6858762  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 605 - 640
Target Start/End: Complemental strand, 3816348 - 3816313
Alignment:
Q  605 atgtgtgacttaagtcacgctgcatgagttaactca 640  Q
    ||||||||||||||||||||||| ||||||||||||    
T  3816348 atgtgtgacttaagtcacgctgcgtgagttaactca 3816313  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 658 - 700
Target Start/End: Original strand, 6858711 - 6858753
Alignment:
Q  658 gtgtgagttaacttacgtaggttataaaccctgtgtgagttaa 700  Q
    ||||||||||||| |||||||||||||||| || |||||||||    
T  6858711 gtgtgagttaactcacgtaggttataaaccttgcgtgagttaa 6858753  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 567 - 624
Target Start/End: Complemental strand, 6858824 - 6858766
Alignment:
Q  567 aaaaattgttcgctcccaactaaactttcgaaaatacca-tgtgtgacttaagtcacgc 624  Q
    ||||||||| ||||| |||| ||||||||||| |||||| || ||||||||||||||||    
T  6858824 aaaaattgtccgctctcaaccaaactttcgaatataccactgcgtgacttaagtcacgc 6858766  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 611 - 640
Target Start/End: Complemental strand, 304372 - 304343
Alignment:
Q  611 gacttaagtcacgctgcatgagttaactca 640  Q
    ||||||||||||||||||||||||||||||    
T  304372 gacttaagtcacgctgcatgagttaactca 304343  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 552 - 685
Target Start/End: Original strand, 5655261 - 5655395
Alignment:
Q  552 tgctctcctccgatgaaaaattgttcgctcccaactaaactttcgaaaata-ccatgtgtgacttaagtcacgctgcatgagttaactcattctggttat 650  Q
    |||||| |||| || |||||||||||||| ||||| |||||| ||||||||  | |||||||||||||||||||||   |||||||||||    ||||||    
T  5655261 tgctcttctcccataaaaaattgttcgcttccaaccaaacttccgaaaatattcctgtgtgacttaagtcacgctgtgcgagttaactcacataggttat 5655360  T
Q  651 aaatcttgtgtgagttaacttacgtaggttataaa 685  Q
    ||||  || | ||||||||| | ||||||||||||    
T  5655361 aaattctgcgcgagttaactcatgtaggttataaa 5655395  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 604 - 640
Target Start/End: Original strand, 25868123 - 25868159
Alignment:
Q  604 catgtgtgacttaagtcacgctgcatgagttaactca 640  Q
    |||||||||||||||||||||||||||||||||||||    
T  25868123 catgtgtgacttaagtcacgctgcatgagttaactca 25868159  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 604 - 641
Target Start/End: Complemental strand, 14410805 - 14410768
Alignment:
Q  604 catgtgtgacttaagtcacgctgcatgagttaactcat 641  Q
    |||||||||||||||||||||||| |||||||||||||    
T  14410805 catgtgtgacttaagtcacgctgcgtgagttaactcat 14410768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 604 - 640
Target Start/End: Complemental strand, 25994982 - 25994946
Alignment:
Q  604 catgtgtgacttaagtcacgctgcatgagttaactca 640  Q
    |||| ||||||||||||||||||||||||||||||||    
T  25994982 catgcgtgacttaagtcacgctgcatgagttaactca 25994946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 604 - 640
Target Start/End: Original strand, 186963 - 186999
Alignment:
Q  604 catgtgtgacttaagtcacgctgcatgagttaactca 640  Q
    |||||||||||||||||||| ||||||||||||||||    
T  186963 catgtgtgacttaagtcacgttgcatgagttaactca 186999  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 762 - 813
Target Start/End: Original strand, 9437516 - 9437567
Alignment:
Q  762 gtggaccacagaaaaatcttgtatttgactggttcagattaaataatccaaa 813  Q
    ||||||||||||||||||||||| ||||||  |||| |||| ||||||||||    
T  9437516 gtggaccacagaaaaatcttgtacttgactaattcatattatataatccaaa 9437567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 729 - 796
Target Start/End: Complemental strand, 32427827 - 32427760
Alignment:
Q  729 tgcgtcgtggaccatataaactattgatgcaatgtggaccacagaaaaatcttgtatttgactggttc 796  Q
    |||||||||||||| ||||| | | | |||||| ||||||||||||||||| |||| || ||||||||    
T  32427827 tgcgtcgtggaccaaataaattgtcggtgcaatatggaccacagaaaaatcatgtacttaactggttc 32427760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 761 - 808
Target Start/End: Complemental strand, 33680779 - 33680732
Alignment:
Q  761 tgtggaccacagaaaaatcttgtatttgactggttcagattaaataat 808  Q
    ||||||||||||||||||  |||| ||||||||||||||||| |||||    
T  33680779 tgtggaccacagaaaaattatgtacttgactggttcagattatataat 33680732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 605 - 640
Target Start/End: Original strand, 53038903 - 53038938
Alignment:
Q  605 atgtgtgacttaagtcacgctgcatgagttaactca 640  Q
    |||||||||||||||||||| |||||||||||||||    
T  53038903 atgtgtgacttaagtcacgccgcatgagttaactca 53038938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 759 - 797
Target Start/End: Complemental strand, 26719564 - 26719526
Alignment:
Q  759 aatgtggaccacagaaaaatcttgtatttgactggttca 797  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  26719564 aatgtggaccacatcaaaatcttgtatttgactggttca 26719526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 756 - 809
Target Start/End: Complemental strand, 26741070 - 26741017
Alignment:
Q  756 tgcaatgtggaccacagaaaaatcttgtatttgactggttcagattaaataatc 809  Q
    |||||||||||||| |  |||||||||| ||||||||||||| |||| ||||||    
T  26741070 tgcaatgtggaccatatcaaaatcttgtgtttgactggttcaaattatataatc 26741017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 567 - 604
Target Start/End: Original strand, 38810084 - 38810121
Alignment:
Q  567 aaaaattgttcgctcccaactaaactttcgaaaatacc 604  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  38810084 aaaaattgttcgctcccaacctaactttcgaaaatacc 38810121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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