View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6033_low_11 (Length: 427)
Name: NF6033_low_11
Description: NF6033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6033_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 7883532 - 7883178
Alignment:
| Q |
18 |
atagctcccataaatcctgaaacaagaattgattcatttagagtattgatattgaactttatatttatgtgaataattgtttgtgatcttattcttacca |
117 |
Q |
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| T |
7883532 |
atagctcccataaatcctgaaacaagaattgattcatttagagtattgatattgaactttatatttatgtgaataattgtttgtgatcttattcctacca |
7883433 |
T |
|
| Q |
118 |
gtcatattgaaattgagttctgttacagcagctagtgcacaaccaccaattattggcaacaatgagaggtaaactggcatagggaatgcttctccaagca |
217 |
Q |
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| T |
7883432 |
atcatattgaaattgagttctgttacagcagctagtgcacaaccaccaattattggcaacaatgagaggtaaactggcatagggaatgcttctccaagca |
7883333 |
T |
|
| Q |
218 |
agaatcttgatactagcacactgaaagctggttctccactcttgatgatgtgagtgaatgaaactgctactttggacatactcacagttgcagcaacatg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7883332 |
agaatcttgatactagcacactgaaagctggttctccactcttgatgatgtgagtgaatgaaactgctactttggacatactcacagttgcagcaacatg |
7883233 |
T |
|
| Q |
318 |
cccaattgtgtgtgccacagctacctacatacccaaatttaaaatttcttagtta |
372 |
Q |
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| T |
7883232 |
cccaattgtgtgtgccacagctacctacataaccaaatttgaaatttcttagtta |
7883178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 110 - 343
Target Start/End: Complemental strand, 54985877 - 54985644
Alignment:
| Q |
110 |
tcttaccagtcatattgaaattgagttctgttacagcagctagtgcacaaccaccaattattggcaacaatgagaggtaaactggcatagggaatgcttc |
209 |
Q |
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| T |
54985877 |
tcttaccaatcatattgaaattaagttctgtgacagcagcaagtgcacaacctccaataattggtagtagtgaaaggtaaacttgtaaagggaacgcttc |
54985778 |
T |
|
| Q |
210 |
tccaagcaagaatcttgatactagcacactgaaagctggttctccactcttgatgatgtgagtgaatgaaactgctactttggacatactcacagttgca |
309 |
Q |
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|||||||||||| ||||||| || ||||||||||| ||||||||||| ||||| ||||| || ||||||||||| |||||||||||||||||||| || |
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| T |
54985777 |
accaagcaagaattttgatacaagaacactgaaagcaggttctccacttttgattatgtgtgtaaatgaaactgcaactttggacatactcacagtagcc |
54985678 |
T |
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| Q |
310 |
gcaacatgcccaattgtgtgtgccacagctacct |
343 |
Q |
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| T |
54985677 |
gcaacatgcccaattgtatgtgccacagcaacct |
54985644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 112 - 343
Target Start/End: Complemental strand, 18396224 - 18395993
Alignment:
| Q |
112 |
ttaccagtcatattgaaattgagttctgttacagcagctagtgcacaaccaccaattattggcaacaatgagaggtaaactggcatagggaatgcttctc |
211 |
Q |
| |
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|||||| ||||||||||||||||||| || |||||||| |||||||| |||||||| ||||| | || || || || ||||||| ||||| | ||| | |
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| T |
18396224 |
ttaccaatcatattgaaattgagttcagtcacagcagcaagtgcacatccaccaatgattggaattaaagacagatagactggcacggggaaggtttcac |
18396125 |
T |
|
| Q |
212 |
caagcaagaatcttgatactagcacactgaaagctggttctccactcttgatgatgtgagtgaatgaaactgctactttggacatactcacagttgcagc |
311 |
Q |
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| | | ||||| || || || ||||| ||||| || || |||||||||||||| || || || || || || |||||||||||||| || || || || |
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| T |
18396124 |
ccaagataaatctcgaaaccagaacactaaaagcaggctcgccactcttgatgatatgtgtaaacgacacagccactttggacatactaaccgtagccgc |
18396025 |
T |
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| Q |
312 |
aacatgcccaattgtgtgtgccacagctacct |
343 |
Q |
| |
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||||| |||||||||||||| ||||| |||| |
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| T |
18396024 |
gacatgtccaattgtgtgtgcaacagcaacct |
18395993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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