View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6033_low_13 (Length: 402)

Name: NF6033_low_13
Description: NF6033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6033_low_13
NF6033_low_13
[»] chr4 (16 HSPs)
chr4 (12-386)||(50518072-50518445)
chr4 (7-260)||(11481151-11481405)
chr4 (79-282)||(25515030-25515233)
chr4 (106-279)||(28069796-28069969)
chr4 (99-278)||(50065828-50066006)
chr4 (79-261)||(28257305-28257485)
chr4 (182-279)||(25538474-25538572)
chr4 (232-279)||(16490980-16491027)
chr4 (228-279)||(20885595-20885646)
chr4 (228-279)||(33309958-33310009)
chr4 (228-279)||(15551555-15551606)
chr4 (230-281)||(18126324-18126375)
chr4 (236-279)||(23443780-23443823)
chr4 (96-173)||(7580764-7580840)
chr4 (82-142)||(9244071-9244131)
chr4 (232-276)||(17239079-17239123)
[»] chr8 (14 HSPs)
chr8 (7-365)||(24268643-24269013)
chr8 (7-279)||(31576409-31576683)
chr8 (8-279)||(12766215-12766486)
chr8 (7-279)||(20028729-20028996)
chr8 (7-279)||(20036490-20036757)
chr8 (7-279)||(42713706-42713977)
chr8 (112-279)||(988045-988213)
chr8 (102-279)||(7836820-7836998)
chr8 (102-279)||(7807397-7807574)
chr8 (7-277)||(9418190-9418458)
chr8 (7-279)||(24097211-24097486)
chr8 (236-279)||(12924352-12924395)
chr8 (228-277)||(18144564-18144612)
chr8 (228-277)||(25052186-25052234)
[»] scaffold0771 (1 HSPs)
scaffold0771 (79-279)||(5379-5579)
[»] chr3 (17 HSPs)
chr3 (79-279)||(13953239-13953439)
chr3 (8-249)||(23484940-23485181)
chr3 (7-279)||(13329443-13329712)
chr3 (79-279)||(36433785-36433985)
chr3 (79-279)||(46280048-46280248)
chr3 (7-213)||(7786523-7786727)
chr3 (7-213)||(9308418-9308622)
chr3 (167-279)||(37919701-37919814)
chr3 (232-279)||(17531194-17531241)
chr3 (232-279)||(17536133-17536180)
chr3 (232-279)||(32876835-32876882)
chr3 (228-279)||(46306720-46306771)
chr3 (233-279)||(54623336-54623382)
chr3 (228-280)||(5384688-5384740)
chr3 (230-281)||(4362428-4362479)
chr3 (232-272)||(48977816-48977856)
chr3 (232-272)||(48987356-48987396)
[»] chr7 (9 HSPs)
chr7 (7-279)||(2890632-2890903)
chr7 (7-261)||(48712627-48712882)
chr7 (7-261)||(32816897-32817152)
chr7 (10-279)||(4314159-4314427)
chr7 (10-279)||(9735803-9736071)
chr7 (228-279)||(14635886-14635937)
chr7 (228-279)||(14645586-14645637)
chr7 (228-279)||(15948518-15948569)
chr7 (228-279)||(33293308-33293359)
[»] chr2 (11 HSPs)
chr2 (7-279)||(35876022-35876289)
chr2 (7-279)||(35883511-35883778)
chr2 (7-279)||(36723224-36723491)
chr2 (7-211)||(29910405-29910607)
chr2 (124-213)||(14272152-14272241)
chr2 (228-279)||(3394736-3394787)
chr2 (228-279)||(3395888-3395939)
chr2 (232-272)||(1790145-1790185)
chr2 (232-272)||(1799639-1799679)
chr2 (232-272)||(22631395-22631435)
chr2 (236-279)||(27421503-27421547)
[»] chr6 (9 HSPs)
chr6 (46-279)||(17513613-17513841)
chr6 (7-216)||(2850424-2850631)
chr6 (7-143)||(14097657-14097791)
chr6 (228-279)||(22064607-22064658)
chr6 (228-279)||(22065295-22065346)
chr6 (233-279)||(23883500-23883546)
chr6 (228-277)||(23117842-23117892)
chr6 (230-277)||(19024920-19024968)
chr6 (228-279)||(19599097-19599146)
[»] scaffold0206 (1 HSPs)
scaffold0206 (7-279)||(659-926)
[»] chr1 (11 HSPs)
chr1 (7-279)||(35755767-35756038)
chr1 (99-276)||(23550486-23550664)
chr1 (7-193)||(26907673-26907858)
chr1 (228-282)||(21632642-21632696)
chr1 (7-146)||(5382714-5382851)
chr1 (228-279)||(14273161-14273212)
chr1 (228-279)||(14284567-14284618)
chr1 (232-279)||(25881022-25881069)
chr1 (199-279)||(3474219-3474302)
chr1 (232-279)||(28315023-28315070)
chr1 (228-270)||(16768984-16769026)
[»] scaffold0091 (1 HSPs)
scaffold0091 (9-212)||(15719-15920)
[»] chr5 (17 HSPs)
chr5 (7-279)||(11222228-11222499)
chr5 (7-279)||(42733563-42733834)
chr5 (7-146)||(26649391-26649528)
chr5 (7-146)||(26920976-26921113)
chr5 (26-180)||(26649562-26649714)
chr5 (26-180)||(26921147-26921299)
chr5 (228-279)||(20034982-20035033)
chr5 (233-280)||(20833428-20833475)
chr5 (228-279)||(33956643-33956694)
chr5 (228-277)||(13816509-13816557)
chr5 (232-272)||(1694758-1694798)
chr5 (232-272)||(5599722-5599762)
chr5 (232-272)||(5609368-5609408)
chr5 (232-272)||(17554783-17554823)
chr5 (182-261)||(26651734-26651814)
chr5 (182-261)||(26923319-26923399)
chr5 (232-272)||(31151639-31151679)
[»] scaffold0186 (1 HSPs)
scaffold0186 (9-169)||(3511-3669)
[»] scaffold0247 (1 HSPs)
scaffold0247 (232-279)||(23616-23663)
[»] scaffold0920 (1 HSPs)
scaffold0920 (233-279)||(1816-1862)
[»] scaffold0773 (1 HSPs)
scaffold0773 (228-279)||(1891-1942)
[»] scaffold0021 (1 HSPs)
scaffold0021 (232-279)||(176473-176520)
[»] scaffold1409 (1 HSPs)
scaffold1409 (228-279)||(339-390)
[»] scaffold0281 (1 HSPs)
scaffold0281 (232-272)||(23201-23241)


Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 12 - 386
Target Start/End: Complemental strand, 50518445 - 50518072
Alignment:
Q  12 gatcatatgcttgaagatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatcaatcaa 111  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||       |||||||||||||||| ||||||||||||||||    
T  50518445 gatcatatgcttgaagatactatcataaaagatttaggatgatcgaagaatcttccatcatttttttaagatatgatttgggagaatagaaatcaatcaa 50518346  T
Q  112 agaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatgtttttaaagataa 211  Q
    | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50518345 ataaatttttattttgagagaggttcctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatgtttttaaagataa 50518246  T
Q  212 cacatatttatatgtattatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgttatttgacacaacataaagaaagggcattcaca 311  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  50518245 cacatatttacatgtattatcttgttatctactaatgtattttgtgagaaatgtttcatgagaatgtt-tttgacacaacacaaagaaagggcattcaca 50518147  T
Q  312 caaaagacaaaagcaagcttttataaggcatgacatcattttgatcaagaaatttattatgagaaatggtctcac 386  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50518146 caaaagacaaaagcaaacttttataaggcatgacatcattttgatcaagaaatttattatgagaaatggtctcac 50518072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 7 - 260
Target Start/End: Original strand, 11481151 - 11481405
Alignment:
Q  7 ttcatgatcatatgcttgaagatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatca 106  Q
    |||||||||||||| |||||||| |||||| ||||||||||||||||| ||||||||||||||||       |||||||||||| ||| || ||||| ||    
T  11481151 ttcatgatcatatgtttgaagattctatcataaaagatttaggatgattgaagaatcttccatcatttttttaagatatgatttaggagaaaagaaaaca 11481250  T
Q  107 atcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaac-attttggtcatacaaaatgaagagaacatcctcacttgatgtttttaa 205  Q
    ||||||  |||||||| ||||||||||||||||||||||||| | || ||  ||| |||||||||||| ||||||||||||||||||||||| |||||||    
T  11481251 atcaaatgaatttttactttgagagaggtttctcatgttcttgcaaaaaaatattatggtcatacaaactgaagagaacatcctcacttgatttttttaa 11481350  T
Q  206 agataacacatatttatatgtattatcttgttatatactaatgtattttgtgaga 260  Q
    |||||||||||||||| || |||||||||||||| ||||||||  ||||||||||    
T  11481351 agataacacatatttacatttattatcttgttatctactaatgatttttgtgaga 11481405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 79 - 282
Target Start/End: Original strand, 25515030 - 25515233
Alignment:
Q  79 aagatatgatttgggaaaatagaaatcaatcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaa 178  Q
    |||||||||||||| | || ||||||||||||||| |||||| | ||||||| ||||||||||||||| ||| || | ||||||||||||||||||||||    
T  25515030 aagatatgatttgg-agaacagaaatcaatcaaaggaattttgactttgagaaaggtttctcatgttcctacaaatatcattttggtcatacaaaatgaa 25515128  T
Q  179 gagaacatcctcacttgatgtttttaaagataacacatat-ttatatgtattatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatg 277  Q
    || |||||||||| |||||||||| |||||||||| | || ||| |  |||||| ||||||| ||||| ||| |||||||||||||||||||||||||||    
T  25515129 gaaaacatcctcatttgatgttttaaaagataacaaaaatattacaattattattttgttatctactagtgtgttttgtgagaaatgtttcatgagaatg 25515228  T
Q  278 ttatt 282  Q
    |||||    
T  25515229 ttatt 25515233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 106 - 279
Target Start/End: Original strand, 28069796 - 28069969
Alignment:
Q  106 aatcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatgtttttaa 205  Q
    ||||||||||||||| | ||||||||||||||||||||||| ||| || | |||||||||||||||||||||||| |||||||||| |||||||||| ||    
T  28069796 aatcaaagaaattttgactttgagagaggtttctcatgttcctacaaatatcattttggtcatacaaaatgaagaaaacatcctcatttgatgttttaaa 28069895  T
Q  206 agataacacatatttatatgtattatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
     ||||  | |   ||| |  |||||| ||||||| ||||| ||| |||||||||||||||||||||||||||||    
T  28069896 cgatacgaaaatattacaattattattttgttatctactagtgtgttttgtgagaaatgtttcatgagaatgtt 28069969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 99 - 278
Target Start/End: Complemental strand, 50066006 - 50065828
Alignment:
Q  99 agaaatcaatcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatg 198  Q
    ||||||||||||||| |||||| | ||||||| ||||||||||||||| ||| || | |||||||||||||||||||||||| |||||||| | ||||||    
T  50066006 agaaatcaatcaaaggaattttgactttgagaaaggtttctcatgttcctac-aatatcattttggtcatacaaaatgaagaaaacatcctaatttgatg 50065908  T
Q  199 tttttaaagataacacatatttatatgtattatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgt 278  Q
    |||| ||| |||||| |   ||| |  |||||| ||||||| ||||| ||| ||||||||||||||||||||||||||||    
T  50065907 ttttaaaatataacaaaatattacaattattattttgttatctactagtgtgttttgtgagaaatgtttcatgagaatgt 50065828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 79 - 261
Target Start/End: Complemental strand, 28257485 - 28257305
Alignment:
Q  79 aagatatgatttgggaaaatagaaatcaatcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaa 178  Q
    |||||||||||||||| |||||||||||||||||| |||||| | |  || | | ||||||||||||| ||| ||||||||| |||| ||||||| |||     
T  28257485 aagatatgatttgggagaatagaaatcaatcaaaggaattttgact--gaaaaaagtttctcatgttcctacaaagaacattatggttatacaaagtgag 28257388  T
Q  179 gagaacatcctcacttgatgtttttaaagataacacatat-ttatatgtattatcttgttatatactaatgtattttgtgagaa 261  Q
    |||||||||||| ||||||| ||| || ||||||| |  | ||| |  |||||||||||||| |||||| || |||||||||||    
T  28257387 gagaacatcctctcttgatg-tttcaatgataacaaacgtattacaattattatcttgttatctactaacgtgttttgtgagaa 28257305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 279
Target Start/End: Complemental strand, 25538572 - 25538474
Alignment:
Q  182 aacatcctcacttgatgtttttaaagataacacatat-ttatatgtattatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    |||||||||| |||||||||| |||||||||| | || ||| |  |||||| ||||||| ||||| ||| |||||||| ||||||||||||||||||||    
T  25538572 aacatcctcatttgatgttttaaaagataacaaaaatattacaattattattttgttatctactagtgtgttttgtgataaatgtttcatgagaatgtt 25538474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 16491027 - 16490980
Alignment:
Q  232 cttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||    
T  16491027 cttgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 16490980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 20885646 - 20885595
Alignment:
Q  228 ttatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    |||| ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  20885646 ttatattgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 20885595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 33310009 - 33309958
Alignment:
Q  228 ttatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    |||| ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  33310009 ttatattgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 33309958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 15551606 - 15551555
Alignment:
Q  228 ttatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    |||| ||||||| |||||| | ||||||||||||||||||||||||||||||    
T  15551606 ttatattgttatctactaacgaattttgtgagaaatgtttcatgagaatgtt 15551555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 281
Target Start/End: Complemental strand, 18126375 - 18126324
Alignment:
Q  230 atcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgttat 281  Q
    |||||||||| ||||||| |||||||||| || ||||||||||||| |||||    
T  18126375 atcttgttatctactaatttattttgtgataattgtttcatgagaacgttat 18126324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 236 - 279
Target Start/End: Complemental strand, 23443823 - 23443780
Alignment:
Q  236 ttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    |||| |||| ||| ||||||||||||||||||||||||||||||    
T  23443823 ttatctactgatgaattttgtgagaaatgtttcatgagaatgtt 23443780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 173
Target Start/End: Original strand, 7580764 - 7580840
Alignment:
Q  96 aatagaaatcaatcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaa 173  Q
    |||||||||||| ||||| |||||| | ||||||| ||||||||||||| | ||   |||||||||||| ||||||||    
T  7580764 aatagaaatcaaacaaagcaattttgactttgagaaaggtttctcatgtcccta-atagaacattttggacatacaaa 7580840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 9244071 - 9244131
Alignment:
Q  82 atatgatttgggaaaatagaaatcaatcaaagaaatttttattttgagagaggtttctcat 142  Q
    ||||||||||| | |||||||||||| ||||| |||||| |  |||||| |||||||||||    
T  9244071 atatgatttggaagaatagaaatcaaacaaagcaattttgacattgagaaaggtttctcat 9244131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 276
Target Start/End: Original strand, 17239079 - 17239123
Alignment:
Q  232 cttgttatatactaatgtattttgtgagaaatgtttcatgagaat 276  Q
    |||||||| ||||  || |||||||||||||||||||||||||||    
T  17239079 cttgttatctacttttgaattttgtgagaaatgtttcatgagaat 17239123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 365
Target Start/End: Original strand, 24268643 - 24269013
Alignment:
Q  7 ttcatgatcatatgcttgaagatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaa-gatatgatttgggaaaatagaaatc 105  Q
    |||||||||| |||||||| ||| |||||  ||||||||||||||||||||||||||||||||||       || ||||||||| |||| ||||||||||    
T  24268643 ttcatgatcacatgcttgatgattctatcgtaaaagatttaggatgatcgaagaatcttccatcatttttttaaagatatgattcgggagaatagaaatc 24268742  T
Q  106 aatcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatgtttttaa 205  Q
    |||||||  |||||||| ||||||||||||||||||| | ||||| ||||||||| |||||| ||||| |||||||||||||||||||||||||||||||    
T  24268743 aatcaaacgaatttttactttgagagaggtttctcatatccttacaaagaacattctggtcagacaaagtgaagagaacatcctcacttgatgtttttaa 24268842  T
Q  206 agataacacatatttatatgtattatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgttat-----------ttgacacaacata 294  Q
    |||||||||||||||| || |||||||||||||| ||||||||| |||||||| |||||||||||||||||| | |           ||| ||||||| |    
T  24268843 agataacacatatttacatttattatcttgttatctactaatgtgttttgtgataaatgtttcatgagaatgatctcaagaatgttcttggcacaacaca 24268942  T
Q  295 aagaaagggcattcacacaaaagacaaaagcaagcttttataaggcatgacatcattttgatcaagaaatt 365  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||    
T  24268943 aagaaagggcattcacacaaaagacaagagcaagcttttataaggcaaggcatcattttgatcaagaaatt 24269013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 7 - 279
Target Start/End: Complemental strand, 31576683 - 31576409
Alignment:
Q  7 ttcatgatcatatgcttgaagatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaa--gatatgatttgggaaaatagaaat 104  Q
    |||||||||| |||||||||||| |||||| ||||||||||||||||| ||||||||||||||||       ||  |||||||||||||| |||||||||    
T  31576683 ttcatgatcacatgcttgaagattctatcataaaagatttaggatgattgaagaatcttccatcatttttttaaaagatatgatttgggagaatagaaat 31576584  T
Q  105 caatcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatgttttta 204  Q
    ||||||||  |||||||| ||||||||||||||||||| ||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  31576583 caatcaaatgaatttttactttgagagaggtttctcatattcttacaaagaacattctggtcatacaaagtgaagagaacatcctcacttgatgttttta 31576484  T
Q  205 aagataacacatatttatatgtattatcttgttatatactaatgtattttgtgagaaatgtttca-tgagaatgtt 279  Q
    ||||||||||||||||| || |||||||||||||| ||||||||| ||||||||| ||||||||| ||||||||||    
T  31576483 aagataacacatatttacatttattatcttgttatctactaatgtgttttgtgag-aatgtttcagtgagaatgtt 31576409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 8 - 279
Target Start/End: Original strand, 12766215 - 12766486
Alignment:
Q  8 tcatgatcatatgcttgaagatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatcaa 107  Q
    |||||||||||||| ||||||| |||||| |||||| ||||||||||| |||||||||||||||       ||||||| |||||||| ||||||||||||    
T  12766215 tcatgatcatatgcatgaagattctatcataaaagacttaggatgatccaagaatcttccatcatttttc-aagatataatttgggagaatagaaatcaa 12766313  T
Q  108 tcaaagaaatttttattttgagagaggtttctcatgttcttacgaa-gaacattttggtcatacaaaatgaagagaacatcctcacttgatgtttttaaa 206  Q
    | |||| |||||||| ||||||| ||||||||||||||||||| || |||||||| ||||||| ||| |||||||||||||||||||| ||||||| |||    
T  12766314 taaaaggaatttttactttgagaaaggtttctcatgttcttacaaaagaacatttcggtcataaaaagtgaagagaacatcctcactttatgttttaaaa 12766413  T
Q  207 gataacacatatttatatgtattatcttgttatatactaatgtattttgtgagaaatgtttca-tgagaatgtt 279  Q
    ||||||||||||||| || |||||||||||||| ||||||||| ||||||||| ||||||||| ||||||||||    
T  12766414 gataacacatatttacatttattatcttgttatctactaatgtgttttgtgag-aatgtttcagtgagaatgtt 12766486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 7 - 279
Target Start/End: Original strand, 20028729 - 20028996
Alignment:
Q  7 ttcatgatcatatgcttgaagatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatca 106  Q
    ||||||||||||||| ||||||| |||||| || | |   |||||| || |||||||||||||||       ||||||||||| ||||||||||||||||    
T  20028729 ttcatgatcatatgcatgaagattctatcataataaacaaaggatggtccaagaatcttccatcatttttt-aagatatgattcgggaaaatagaaatca 20028827  T
Q  107 atcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatgtttttaaa 206  Q
    ||||||| ||||||||  |||||| | ||||||||||||||||  ||||||||| |||||||||||| |||||||||||||||||||| ||||||||       
T  20028828 atcaaaggaatttttaccttgagaaaagtttctcatgttcttaaaaagaacattctggtcatacaaagtgaagagaacatcctcactttatgttttt--- 20028924  T
Q  207 gataacacatatttatatgtattatcttgttatatactaatgtattttgtgagaaatgtttca-tgagaatgtt 279  Q
      ||||||||||||| || |||||||||||||| ||||||||| ||||||||| ||||||||| ||||||||||    
T  20028925 -ttaacacatatttacatttattatcttgttatctactaatgtgttttgtgag-aatgtttcagtgagaatgtt 20028996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 7 - 279
Target Start/End: Original strand, 20036490 - 20036757
Alignment:
Q  7 ttcatgatcatatgcttgaagatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatca 106  Q
    ||||||||||||||| ||||||| |||||| || | |  ||||||| || |||||||||||||||       ||||||||||| ||||||||||||||||    
T  20036490 ttcatgatcatatgcatgaagattctatcataataaacataggatggtcaaagaatcttccatcatttttt-aagatatgattcgggaaaatagaaatca 20036588  T
Q  107 atcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatgtttttaaa 206  Q
    ||||||| || |||||  |||||| | ||||||||||||||||  ||||||||| |||||||||||| |||||||||||||||||||| ||||||||       
T  20036589 atcaaaggaaattttaccttgagaaaagtttctcatgttcttaaaaagaacattctggtcatacaaagtgaagagaacatcctcactttatgttttt--- 20036685  T
Q  207 gataacacatatttatatgtattatcttgttatatactaatgtattttgtgagaaatgtttca-tgagaatgtt 279  Q
      ||||||||||||| || |||||||||||||| ||||||||| ||||||||| ||||||||| ||||||||||    
T  20036686 -ttaacacatatttacatttattatcttgttatctactaatgtgttttgtgag-aatgtttcagtgagaatgtt 20036757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 7 - 279
Target Start/End: Complemental strand, 42713977 - 42713706
Alignment:
Q  7 ttcatgatcatatgcttgaagatactatcacaa-aagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatc 105  Q
    ||||||||||||||| ||||||| |||||| || || |  || ||||||| |||||||||||||||       ||||||||||| |||| ||||||||||    
T  42713977 ttcatgatcatatgcatgaagattctatcataataaaacataagatgatccaagaatcttccatcatttttt-aagatatgattcgggagaatagaaatc 42713879  T
Q  106 aatcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatgtttttaa 205  Q
    |||||||| |||||||| ||||||| | ||||||||||||||||| ||||||||  ||||||| |||| |||||||||||||||||||| ||||||||      
T  42713878 aatcaaaggaatttttactttgagaaaagtttctcatgttcttacaaagaacatactggtcattcaaagtgaagagaacatcctcactttatgttttt-t 42713780  T
Q  206 agataacacatatttatatgtattatcttgttatatactaatgtattttgtgagaaatgtttca-tgagaatgtt 279  Q
       ||||||||||||| || |||||||||||||| ||||||||| ||||||||| ||||||||| ||||||||||    
T  42713779 ttttaacacatatttacatttattatcttgttatctactaatgtgttttgtgag-aatgtttcagtgagaatgtt 42713706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 112 - 279
Target Start/End: Original strand, 988045 - 988213
Alignment:
Q  112 agaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatgtttttaaagataa 211  Q
    ||||||||| | ||||||| ||||||||||||||| ||| || | |||||||||||||||||||||||| |||||||||| |||||||||| ||||||||    
T  988045 agaaattttgactttgagaaaggtttctcatgttcctacaaatatcattttggtcatacaaaatgaagaaaacatcctcatttgatgttttaaaagataa 988144  T
Q  212 cacatat-ttatatgtattatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    || | || ||| |  |||||| ||||||| ||||| ||| |||||||||||||||||||||||||||||    
T  988145 caaaaatattacaattattattttgttatctactagtgtgttttgtgagaaatgtttcatgagaatgtt 988213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 102 - 279
Target Start/End: Original strand, 7836820 - 7836998
Alignment:
Q  102 aatcaatcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatgttt 201  Q
    |||||||||||| |||||| | ||||||| |||||||||||||||  || || | ||||||||||||||||| ||||||  ||||||||| |||||||||    
T  7836820 aatcaatcaaaggaattttgactttgagaaaggtttctcatgttccaacaaatatcattttggtcatacaaagtgaagaagacatcctcatttgatgttt 7836919  T
Q  202 ttaaagataacacatat-ttatatgtattatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    | |||||||||| | || ||| |  |||||| ||||||| ||||  ||| |||||||||||||||||||||||||||||    
T  7836920 taaaagataacaaaaatattacaattattattttgttatctactggtgtgttttgtgagaaatgtttcatgagaatgtt 7836998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 102 - 279
Target Start/End: Original strand, 7807397 - 7807574
Alignment:
Q  102 aatcaatcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatgttt 201  Q
    |||||||||||| |||||| | ||||||| |||||||||||||||  || || | ||||||||||||||||| ||||||  ||||||||| |||||||||    
T  7807397 aatcaatcaaaggaattttgactttgagaaaggtttctcatgttccaacaaatatcattttggtcatacaaagtgaagaagacatcctcatttgatgttt 7807496  T
Q  202 ttaaagataacacatat-ttatatgtattatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    | |||||||||| | || ||| |  |||||| ||||||| ||||| ||| |||||||| ||||||||||||||||||||    
T  7807497 taaaagataacaaaaatattacaattattattttgttatctactagtgtgttttgtga-aaatgtttcatgagaatgtt 7807574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 7 - 277
Target Start/End: Original strand, 9418190 - 9418458
Alignment:
Q  7 ttcatgatcatatgcttgaagatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatca 106  Q
    |||||||||||||||||| |||| |||||| |||| ||||| |||| || |||||||||||||||       ||||||| |||||| | |||||||||||    
T  9418190 ttcatgatcatatgcttggagattctatcataaaatatttatgatggtccaagaatcttccatcacattc--aagatataatttgg-agaatagaaatca 9418286  T
Q  107 atcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatgtttttaaa 206  Q
    ||||||| |||||| | ||| ||| |||||| |||||||| ||| || | |||| || ||||| ||| |||||| |||||||||| |||||||||| |||    
T  9418287 atcaaaggaattttgactttaagaaaggtttatcatgttcctacaaatatcattctgctcatataaagtgaagaaaacatcctcatttgatgttttaaaa 9418386  T
Q  207 gataacacatat-ttatatgtattatcttgttatatactaatgtattttgtgagaaatgtttca-tgagaatg 277  Q
    ||||||| | || ||| |  |||||| |||||||    |||||||||||||||| ||||||||| ||||||||    
T  9418387 gataacaaaaatattacaattattattttgttatccggtaatgtattttgtgag-aatgtttcagtgagaatg 9418458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 7 - 279
Target Start/End: Complemental strand, 24097486 - 24097211
Alignment:
Q  7 ttcatgatcatatgcttgaagatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatca 106  Q
    ||||||||||||||| ||||||| |||||| | |||| |||| |||||| ||||||| |||||||       |||||||||||| ||| |||||||||||    
T  24097486 ttcatgatcatatgcatgaagattctatcatacaagacttagcatgatccaagaatcatccatca-ctattcaagatatgattt-ggagaatagaaatca 24097389  T
Q  107 a----tcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatgtttt 202  Q
    |    |||||  |||||| | ||||||| | || | |||||||| ||| || |  | | |||||||| | | |||||| |||||||||| ||||||||||    
T  24097388 attactcaaatgaattttgactttgagaaaagtctttcatgttcctacaaatattaatctggtcatatagagtgaagaaaacatcctcatttgatgtttt 24097289  T
Q  203 taaagataacacatat-ttatatgtattatcttgttatatactaatgtattttgtgagaaatgtttca-tgagaatgtt 279  Q
     |||||||||| | || ||| |  |||||| |||||||  |||||||| |||||| || ||||||||| ||||||||||    
T  24097288 aaaagataacaaaaatattacaattattattttgttatccactaatgtgttttgtaag-aatgtttcagtgagaatgtt 24097211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 279
Target Start/End: Original strand, 12924352 - 12924395
Alignment:
Q  236 ttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    |||| |||||||| ||||||||||||||||||||||||||||||    
T  12924352 ttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 12924395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 18144612 - 18144564
Alignment:
Q  228 ttatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatg 277  Q
    |||||||||||| |||||||| ||||||||||  ||||||||||||||||    
T  18144612 ttatcttgttatctactaatgaattttgtgag-catgtttcatgagaatg 18144564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 25052234 - 25052186
Alignment:
Q  228 ttatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatg 277  Q
    |||||||||||| |||||||| ||||||||||  ||||||||||||||||    
T  25052234 ttatcttgttatctactaatgaattttgtgag-catgtttcatgagaatg 25052186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0771 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: scaffold0771
Description:

Target: scaffold0771; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 79 - 279
Target Start/End: Complemental strand, 5579 - 5379
Alignment:
Q  79 aagatatgatttgggaaaatagaaatcaatcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaa 178  Q
    |||||||||||||||| |||||||||||||||||  |||||||| ||||||| ||||||||||||||||||| ||||||||| |||| ||||||| ||||    
T  5579 aagatatgatttgggagaatagaaatcaatcaaatgaatttttactttgagaaaggtttctcatgttcttacaaagaacattctggttatacaaagtgaa 5480  T
Q  179 gagaacatcctcacttgatgtttttaaagataacacatatttatatgtattatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgt 278  Q
    ||||||||| |||||||||||||||||||||||||| |||||| || |||||||| ||||| |||||||| |||||||||||||||||||||||||||||    
T  5479 gagaacatcttcacttgatgtttttaaagataacacttatttacatttattatctcgttatctactaatgaattttgtgagaaatgtttcatgagaatgt 5380  T
Q  279 t 279  Q
    |    
T  5379 t 5379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 79 - 279
Target Start/End: Complemental strand, 13953439 - 13953239
Alignment:
Q  79 aagatatgatttgggaaaatagaaatcaatcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaa 178  Q
    |||||||||||||||| |||||||||||||||||  |||||||| ||||||| ||||||||||||||||||| ||||||||| |||| ||||||| ||||    
T  13953439 aagatatgatttgggagaatagaaatcaatcaaatgaatttttactttgagaaaggtttctcatgttcttacaaagaacattctggttatacaaagtgaa 13953340  T
Q  179 gagaacatcctcacttgatgtttttaaagataacacatatttatatgtattatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgt 278  Q
    ||||||||| |||||||||||||||||||||||||| |||||| || |||||||| ||||| |||||||| |||||||||||||||||||||||||||||    
T  13953339 gagaacatcttcacttgatgtttttaaagataacacttatttacatttattatctcgttatctactaatgaattttgtgagaaatgtttcatgagaatgt 13953240  T
Q  279 t 279  Q
    |    
T  13953239 t 13953239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 23484940 - 23485181
Alignment:
Q  8 tcatgatcatatgcttgaagatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatcaa 107  Q
    |||||||||||||| ||||||| |||||| |||||| ||||||||||| |||||||||| ||||       ||||||| |||||||| ||||||||||||    
T  23484940 tcatgatcatatgcatgaagattctatcataaaagacttaggatgatccaagaatcttcaatcatttttc-aagatataatttgggagaatagaaatcaa 23485038  T
Q  108 tcaaagaaatttttattttgagagaggtttctcatgttcttacgaa-gaacattttggtcatacaaaatgaagagaacatcctcacttgatgtttttaaa 206  Q
    | |||| |||||||| ||||||| ||||||||||||||||||| || ||||||| |||||||| ||| ||||||||||| | |||||| |||||||||||    
T  23485039 taaaaggaatttttactttgagaaaggtttctcatgttcttacaaaagaacattatggtcataaaaagtgaagagaacaccttcactttatgtttttaaa 23485138  T
Q  207 gataacacatatttatatgtattatcttgttatatactaatgt 249  Q
    ||||||||||||||| || |||||||||||||| |||||||||    
T  23485139 gataacacatatttacatttattatcttgttatctactaatgt 23485181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 7 - 279
Target Start/End: Complemental strand, 13329712 - 13329443
Alignment:
Q  7 ttcatgatcatatgcttgaagatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatca 106  Q
    ||||||||||||||| ||||||| |||||| || | |  |||||||| | |||||||||||||||       ||||||||||| | || |||||||||||    
T  13329712 ttcatgatcatatgcatgaagattctatcataataaacataggatgaaccaagaatcttccatcatttttt-aagatatgattcgcgagaatagaaatca 13329614  T
Q  107 atcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatgtttttaaa 206  Q
    ||||||| |||||||| ||||||| | | ||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||| |||||||| |     
T  13329613 atcaaaggaatttttactttgagaaaagattctcatgttcttacaaagaacattctggtcatacaaagtgaagagaacatcctcactttatgtttttta- 13329515  T
Q  207 gataacacatatttatatgtattatcttgttatatactaatgtattttgtgagaaatgtttca-tgagaatgtt 279  Q
      ||||||||||||| || |||||||||||||| ||||||||| ||||||||  ||||||||| ||||||||||    
T  13329514 -ttaacacatatttacatttattatcttgttatctactaatgtgttttgtga-taatgtttcagtgagaatgtt 13329443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 79 - 279
Target Start/End: Complemental strand, 36433985 - 36433785
Alignment:
Q  79 aagatatgatttgggaaaatagaaatcaatcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaa 178  Q
    |||||||||||||| | || ||||||||||||||| |||||| | ||||||| ||||||||||||||| ||| |  | ||||||||||||||||||||||    
T  36433985 aagatatgatttgg-agaacagaaatcaatcaaaggaattttgactttgagaaaggtttctcatgttcctacaattatcattttggtcatacaaaatgaa 36433887  T
Q  179 gagaacatcctcacttgatgtttttaaagataacacatat-ttatatgtattatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatg 277  Q
    || |||||||||| |||||||||| |||||||||| | || ||| |  |||||| ||||||| ||| | ||| |||||||||||||||||||||||||||    
T  36433886 gaaaacatcctcatttgatgttttaaaagataacaaaaatattacaattattattttgttatctacaagtgtgttttgtgagaaatgtttcatgagaatg 36433787  T
Q  278 tt 279  Q
    ||    
T  36433786 tt 36433785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 79 - 279
Target Start/End: Complemental strand, 46280248 - 46280048
Alignment:
Q  79 aagatatgatttgggaaaatagaaatcaatcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaa 178  Q
    |||||||||||||| | || | ||||||||||||| |||||| | ||||||| | ||||||||||||| ||| || | ||||||||||||||||| ||||    
T  46280248 aagatatgatttgg-agaacaaaaatcaatcaaaggaattttgactttgagaaaagtttctcatgttcctacaaatatcattttggtcatacaaagtgaa 46280150  T
Q  179 gagaacatcctcacttgatgtttttaaagataacacatat-ttatatgtattatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatg 277  Q
    || |||||| | | |||||||||| |||||||||| | || ||| |  |||||| ||||||| ||||| ||| |||||||||||||||||||||||||||    
T  46280149 gaaaacatcataatttgatgttttaaaagataacaaaaatattacaattattattttgttatctactagtgtgttttgtgagaaatgtttcatgagaatg 46280050  T
Q  278 tt 279  Q
    ||    
T  46280049 tt 46280048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 7 - 213
Target Start/End: Complemental strand, 7786727 - 7786523
Alignment:
Q  7 ttcatgatcatatgcttgaagatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatca 106  Q
    |||||||||||||||||| |||| |||||| |||||| ||| |||| || |||||||||||||||       | |||||||||||  |||||||||||||    
T  7786727 ttcatgatcatatgcttggagattctatcataaaagacttatgatggtccaagaatcttccatcactattc-acgatatgatttga-aaaatagaaatca 7786630  T
Q  107 atcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatgtttttaaa 206  Q
    ||||||| |||||| | ||||||| |||||||| |||||| ||| || | |||| |||||||||||| |||||| || ||| ||| |||||||||| |||    
T  7786629 atcaaaggaattttgactttgagaaaggtttcttatgttcctacaaatatcattctggtcatacaaagtgaagaaaatatcatcatttgatgttttaaaa 7786530  T
Q  207 gataaca 213  Q
    |||||||    
T  7786529 gataaca 7786523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 213
Target Start/End: Original strand, 9308418 - 9308622
Alignment:
Q  7 ttcatgatcatatgcttgaagatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatca 106  Q
    ||||||||||||||||| ||||| |||||| |||| | ||| |||| || ||||||| || ||||       || |||| |||||| | || ||||||||    
T  9308418 ttcatgatcatatgctttaagattctatcataaaatacttatgatggtccaagaatcctctatcactattcaaa-atataatttgg-agaagagaaatca 9308515  T
Q  107 atcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatgtttttaaa 206  Q
    ||||||| |||||| | ||||||| |||||| |||||||| |||  | | |||||||||||||||||||||||| |||||||||| || ||||||| |||    
T  9308516 atcaaaggaattttgactttgagaaaggtttttcatgttcctacatatatcattttggtcatacaaaatgaagaaaacatcctcatttaatgttttaaaa 9308615  T
Q  207 gataaca 213  Q
    |||||||    
T  9308616 gataaca 9308622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 167 - 279
Target Start/End: Original strand, 37919701 - 37919814
Alignment:
Q  167 atacaaaatgaagagaacatcctcacttgatgtttttaaagataacacatat-ttatatgtattatcttgttatatactaatgtattttgtgagaaatgt 265  Q
    ||||||||||||||  ||||||||| |||||||||| |||||||||| | || ||| |  |||||| ||||||| || || ||| |||||||||||||||    
T  37919701 atacaaaatgaagaacacatcctcatttgatgttttaaaagataacaaaaatattacaattattattttgttatctattagtgtgttttgtgagaaatgt 37919800  T
Q  266 ttcatgagaatgtt 279  Q
    ||||||||||||||    
T  37919801 ttcatgagaatgtt 37919814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 17531241 - 17531194
Alignment:
Q  232 cttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||    
T  17531241 cttgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 17531194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 17536180 - 17536133
Alignment:
Q  232 cttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||    
T  17536180 cttgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 17536133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 279
Target Start/End: Original strand, 32876835 - 32876882
Alignment:
Q  232 cttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||    
T  32876835 cttgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 32876882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 46306771 - 46306720
Alignment:
Q  228 ttatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    |||| ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  46306771 ttatattgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 46306720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 54623336 - 54623382
Alignment:
Q  233 ttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  54623336 ttgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 54623382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 5384688 - 5384740
Alignment:
Q  228 ttatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtta 280  Q
    |||| ||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  5384688 ttatattgttatctactaatgaattttgtgagaaatgtttcataagaatgtta 5384740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 281
Target Start/End: Complemental strand, 4362479 - 4362428
Alignment:
Q  230 atcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgttat 281  Q
    |||||||||| ||||||| |||||||||| || ||||||||||||| |||||    
T  4362479 atcttgttatctactaatttattttgtgataattgtttcatgagaacgttat 4362428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 48977816 - 48977856
Alignment:
Q  232 cttgttatatactaatgtattttgtgagaaatgtttcatga 272  Q
    |||||||| ||||||| | ||||||||||||||||||||||    
T  48977816 cttgttatctactaatatgttttgtgagaaatgtttcatga 48977856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 48987356 - 48987396
Alignment:
Q  232 cttgttatatactaatgtattttgtgagaaatgtttcatga 272  Q
    |||||||| ||||||| | ||||||||||||||||||||||    
T  48987356 cttgttatctactaatatgttttgtgagaaatgtttcatga 48987396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 7 - 279
Target Start/End: Original strand, 2890632 - 2890903
Alignment:
Q  7 ttcatgatcatatgcttgaagatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatca 106  Q
    ||||||||||||||   |||||| |||||| |||||| |||||| |||| || ||||||||||||       |||||||||||| ||| |||||||||||    
T  2890632 ttcatgatcatatgtacgaagattctatcataaaagacttaggaagatccaaaaatcttccatcattattc-aagatatgatttaggagaatagaaatca 2890730  T
Q  107 atcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatgtttttaaa 206  Q
    ||||||  |||||||| ||||||| ||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||| |||||| ||||    
T  2890731 atcaaatgaatttttactttgagaaaggtttctcatgttcttacaaagaacattctggtcatacaaagtgaagagaacatcctcactttatgtttctaaa 2890830  T
Q  207 gataacacatatttatatgtattatcttgttatatactaatgtattttgtgagaaatgtttca-tgagaatgtt 279  Q
    ||||||||||||||| || |||||||||||||| ||||||||| |||||| || ||||||||| ||||||||||    
T  2890831 gataacacatatttacatttattatcttgttatctactaatgtgttttgtaag-aatgtttcagtgagaatgtt 2890903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 7 - 261
Target Start/End: Complemental strand, 48712882 - 48712627
Alignment:
Q  7 ttcatgatcatatgcttgaagatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatca 106  Q
    ||||| ||||||||| ||||||| |||||| || | | ||||||||||| |||||||| ||||||       || ||||||| ||||| |||||||||||    
T  48712882 ttcataatcatatgcatgaagattctatcataataaacttaggatgatccaagaatctgccatcattattcaaa-atatgatctgggagaatagaaatca 48712784  T
Q  107 atcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatgtttttaaa 206  Q
    ||||||| |||||||| || |||| ||||||||||||||||||| |||||||||  | ||||||||| ||||||||||||| ||||||||||||||||||    
T  48712783 atcaaaggaatttttacttagagaaaggtttctcatgttcttacaaagaacattacgatcatacaaagtgaagagaacatcttcacttgatgtttttaaa 48712684  T
Q  207 gataac--acatatttatatgtattatcttgttatatactaatgtattttgtgagaa 261  Q
    ||||||  |||||||||||| ||||||| |||||| |||||||||||||||||||||    
T  48712683 gataacaaacatatttatatttattatcctgttatctactaatgtattttgtgagaa 48712627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 7 - 261
Target Start/End: Original strand, 32816897 - 32817152
Alignment:
Q  7 ttcatgatcatatgcttgaagatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatca 106  Q
    |||||||||||||||  | || | |||||| |||||| |||||| |||| |||||||||||||||       |||||||||||||||| |||||||||||    
T  32816897 ttcatgatcatatgcacggaggttctatcataaaagagttaggaagatccaagaatcttccatcattattc-aagatatgatttgggagaatagaaatca 32816995  T
Q  107 atcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacatt-ttggtcatacaaaatgaagagaacatcctcacttgatgtttttaa 205  Q
    |||||| ||||||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||||||| | || | |||||| ||| |||||||||| ||    
T  32816996 atcaaataaatttttaatttgagaaaggtttctcatgttcttacaaagaacattcttggtcatacaaagtcaaaaaaacatcatcatttgatgttttaaa 32817095  T
Q  206 agataacacatat-ttatatgtattatcttgttatatactaatgtattttgtgagaa 261  Q
    |||||||| | || ||| |  |||||| |||||||  |||||| |||||| ||||||    
T  32817096 agataacaaaaatattacaattattattttgttatccactaatttattttatgagaa 32817152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 10 - 279
Target Start/End: Complemental strand, 4314427 - 4314159
Alignment:
Q  10 atgatcatatgcttgaagatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatcaatc 109  Q
    ||||||||||||||| ||||  ||||| |||||| ||| |||| || |||||||||  ||||       |||||||||||||| | ||||||||||||||    
T  4314427 atgatcatatgcttggagattatatcataaaagacttatgatggtccaagaatcttatatcactattc-aagatatgatttgg-agaatagaaatcaatc 4314330  T
Q  110 aaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatgtttttaaagat 209  Q
    |||  |||||||| ||| ||| ||||||||||| ||| ||| || | || | ||||||| |||| |||||| |||||||||| |||||||||| ||||||    
T  4314329 aaaagaatttttactttcagaaaggtttctcatattcctacaaatatcactctggtcattcaaagtgaagaaaacatcctcatttgatgttttaaaagat 4314230  T
Q  210 aacacatat-ttatatgtattatcttgttatatactaatgtattttgtgagaaatgtttca-tgagaatgtt 279  Q
    |||| | || | |||  ||||||||||||||  |||||||| ||||||||| ||||||||| ||||||||||    
T  4314229 aacaaaaatatcataattattatcttgttattcactaatgtgttttgtgag-aatgtttcagtgagaatgtt 4314159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 279
Target Start/End: Original strand, 9735803 - 9736071
Alignment:
Q  10 atgatcatatgcttgaagatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatcaatc 109  Q
    ||||||||||||||| ||||  ||||| |||||| ||| |||| || ||||||||| |||||       ||||||||| |||| | ||||||||||||||    
T  9735803 atgatcatatgcttggagattatatcataaaagacttatgatggtccaagaatcttacatcactattc-aagatatgaattgg-agaatagaaatcaatc 9735900  T
Q  110 aaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatgtttttaaagat 209  Q
    |||  |||||| | ||||||| ||||||||||||||||||| || | |||| |  ||||||||| |||||| | |||||||| |||||||||| |||||     
T  9735901 aaatgaattttgactttgagaaaggtttctcatgttcttacaaatatcattctcttcatacaaagtgaagaaaccatcctcatttgatgttttaaaagag 9736000  T
Q  210 aacacata-tttatatgtattatcttgttatatactaatgtattttgtgagaaatgtttca-tgagaatgtt 279  Q
    |||| | | |||| |  |||||| |||| ||  |||||||| ||||||||| ||||||||| ||||||||||    
T  9736001 aacaaaaattttacaattattattttgtcattcactaatgtgttttgtgag-aatgtttcagtgagaatgtt 9736071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 14635937 - 14635886
Alignment:
Q  228 ttatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    |||| ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  14635937 ttatattgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 14635886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 14645637 - 14645586
Alignment:
Q  228 ttatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    |||| ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  14645637 ttatattgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 14645586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 15948569 - 15948518
Alignment:
Q  228 ttatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    |||| ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  15948569 ttatattgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 15948518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 33293359 - 33293308
Alignment:
Q  228 ttatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    |||| ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  33293359 ttatattgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 33293308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 7 - 279
Target Start/End: Original strand, 35876022 - 35876289
Alignment:
Q  7 ttcatgatcatatgcttgaagatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatca 106  Q
    ||||||||||||||| ||||||| |||||| || | |  |||||||||| |||||||||||||||       ||||||||||| |||| |||||||||||    
T  35876022 ttcatgatcatatgcatgaagattctatcataataaacataggatgatccaagaatcttccatcatttttt-aagatatgattcgggagaatagaaatca 35876120  T
Q  107 atcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatgtttttaaa 206  Q
    ||||||| |||||||| ||||||| | ||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||| |||| |||       
T  35876121 atcaaaggaatttttactttgagaaaagtttctcatgttcttacaaagaacattctggtcatacaaagtgaagagaacatcctcactttatgtgttt--- 35876217  T
Q  207 gataacacatatttatatgtattatcttgttatatactaatgtattttgtgagaaatgtttca-tgagaatgtt 279  Q
      ||||||||||||| || |||||||||||||| ||||||||| ||||||||| ||||||||| ||||||||||    
T  35876218 -ttaacacatatttacatttattatcttgttatctactaatgtgttttgtgag-aatgtttcagtgagaatgtt 35876289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 7 - 279
Target Start/End: Original strand, 35883511 - 35883778
Alignment:
Q  7 ttcatgatcatatgcttgaagatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatca 106  Q
    ||||||||||||||| ||||||| |||||| || | |  |||||||||| |||||||||||||||       ||||||||||| |||| |||||||||||    
T  35883511 ttcatgatcatatgcatgaagattctatcataataaacataggatgatccaagaatcttccatcatttttt-aagatatgattcgggagaatagaaatca 35883609  T
Q  107 atcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatgtttttaaa 206  Q
    ||||||| |||||||| ||||||| | ||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||| |||| |||       
T  35883610 atcaaaggaatttttactttgagaaaagtttctcatgttcttacaaagaacattctggtcatacaaagtgaagagaacatcctcactttatgtgttt--- 35883706  T
Q  207 gataacacatatttatatgtattatcttgttatatactaatgtattttgtgagaaatgtttca-tgagaatgtt 279  Q
      ||||||||||||| || |||||||||||||| ||||||||| ||||||||| ||||||||| ||||||||||    
T  35883707 -ttaacacatatttacatttattatcttgttatctactaatgtgttttgtgag-aatgtttcagtgagaatgtt 35883778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 7 - 279
Target Start/End: Original strand, 36723224 - 36723491
Alignment:
Q  7 ttcatgatcatatgcttgaagatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatca 106  Q
    ||||||||||||||| ||||||| |||||| || | |  |||||||||| |||||||||||||||       ||||||||||| |||| |||||||||||    
T  36723224 ttcatgatcatatgcatgaagattctatcataataaacataggatgatccaagaatcttccatcatttttt-aagatatgattcgggagaatagaaatca 36723322  T
Q  107 atcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatgtttttaaa 206  Q
    ||||||| |||||||| ||||||| | ||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||| |||| |||       
T  36723323 atcaaaggaatttttactttgagaaaagtttctcatgttcttacaaagaacattctggtcatacaaagtgaagagaacatcctcactttatgtgttt--- 36723419  T
Q  207 gataacacatatttatatgtattatcttgttatatactaatgtattttgtgagaaatgtttca-tgagaatgtt 279  Q
      ||||||||||||| || |||||||||||||| ||||||||| ||||||||| ||||||||| ||||||||||    
T  36723420 -ttaacacatatttacatttattatcttgttatctactaatgtgttttgtgag-aatgtttcagtgagaatgtt 36723491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 211
Target Start/End: Original strand, 29910405 - 29910607
Alignment:
Q  7 ttcatgatcatatgcttgaagatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatca 106  Q
    ||||||||||||| ||||||||| |||||| |||||||||||||||||| || ||||||||||||       || ||||||||| | | ||||||||| |    
T  29910405 ttcatgatcatatacttgaagattctatcataaaagatttaggatgatccaaaaatcttccatcactattcaaa-atatgattt-gtagaatagaaataa 29910502  T
Q  107 atcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatgtttttaaa 206  Q
    |||| || |||||| | ||||||| | |||| |||||||| ||| || | |||| ||||||||||||| ||||| || ||| ||| |||||| ||| |||    
T  29910503 atcacaggaattttgactttgagaaaagtttatcatgttcctaccaatatcattctggtcatacaaaaagaagaaaatatcttcatttgatgatttaaaa 29910602  T
Q  207 gataa 211  Q
    |||||    
T  29910603 gataa 29910607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 124 - 213
Target Start/End: Original strand, 14272152 - 14272241
Alignment:
Q  124 tttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatgtttttaaagataaca 213  Q
    ||||||| |||||| |||||||| ||| || | ||||||||||||||||| |||||| |||||||||| |||||||||| ||||||||||    
T  14272152 tttgagaaaggtttatcatgttcctacaaatatcattttggtcatacaaagtgaagaaaacatcctcatttgatgttttaaaagataaca 14272241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 279
Target Start/End: Original strand, 3394736 - 3394787
Alignment:
Q  228 ttatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    |||| ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  3394736 ttatattgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 3394787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 279
Target Start/End: Original strand, 3395888 - 3395939
Alignment:
Q  228 ttatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    |||| ||||||| |||||||| ||||||| |||||| |||||||||||||||    
T  3395888 ttatattgttatctactaatgaattttgtaagaaatatttcatgagaatgtt 3395939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 1790145 - 1790185
Alignment:
Q  232 cttgttatatactaatgtattttgtgagaaatgtttcatga 272  Q
    |||||||| ||||||| | ||||||||||||||||||||||    
T  1790145 cttgttatctactaatatgttttgtgagaaatgtttcatga 1790185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 1799639 - 1799679
Alignment:
Q  232 cttgttatatactaatgtattttgtgagaaatgtttcatga 272  Q
    |||||||| ||||||| | ||||||||||||||||||||||    
T  1799639 cttgttatctactaatatgttttgtgagaaatgtttcatga 1799679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 22631395 - 22631435
Alignment:
Q  232 cttgttatatactaatgtattttgtgagaaatgtttcatga 272  Q
    |||||||| ||||||| | ||||||||||||||||||||||    
T  22631395 cttgttatctactaatatgttttgtgagaaatgtttcatga 22631435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 279
Target Start/End: Original strand, 27421503 - 27421547
Alignment:
Q  236 ttatatactaatgtattttgtgagaaatgtttcat-gagaatgtt 279  Q
    |||| ||| |||||||||||||||||||||||||| |||||||||    
T  27421503 ttatctacaaatgtattttgtgagaaatgtttcatagagaatgtt 27421547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 7e-59; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 46 - 279
Target Start/End: Complemental strand, 17513841 - 17513613
Alignment:
Q  46 taggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatcaatcaaagaaatttttattttgagagaggtttctcatgtt 145  Q
    |||||||||| |||||||||||||||       ||||||||||| |||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  17513841 taggatgatccaagaatcttccatcatttttt-aagatatgattcgggagaatagaaatcaatcaaagaaatttttactttgagaaaggtttctcatgtt 17513743  T
Q  146 cttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatgtttttaaagataacacatatttatatgtattatcttgttatatacta 245  Q
    ||||| ||||||||| |||||||||||| ||||||| |||||||||||| ||||||||     ||||||||||||| || |||||||||||||| |||||    
T  17513742 cttacaaagaacattctggtcatacaaagtgaagagtacatcctcactttatgttttt----ttaacacatatttacatttattatcttgttatctacta 17513647  T
Q  246 atgtattttgtgagaaatgtttca-tgagaatgtt 279  Q
    || ||||||||||| ||||||||| ||||||||||    
T  17513646 atttattttgtgag-aatgtttcattgagaatgtt 17513613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 7 - 216
Target Start/End: Original strand, 2850424 - 2850631
Alignment:
Q  7 ttcatgatcatatgcttgaagatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatca 106  Q
    ||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||       |||||||| || |||| |||||||||||    
T  2850424 ttcatgatcatatgcttgaagattctatcataaaagatttaagatgatcgaagaatcttccatcatttttt-aagatatggtt-gggagaatagaaatca 2850521  T
Q  107 atcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatgtttttaaa 206  Q
    ||||||| ||| |||| ||||||| |||||||||| |||||||| ||||||||| |||| ||||||| |||||||||||||| |||| ||||||||||||    
T  2850522 atcaaaggaatatttactttgagaaaggtttctcacgttcttacaaagaacattatggttatacaaagtgaagagaacatccccactcgatgtttttaaa 2850621  T
Q  207 gataacacat 216  Q
    ||||||||||    
T  2850622 gataacacat 2850631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 7 - 143
Target Start/End: Original strand, 14097657 - 14097791
Alignment:
Q  7 ttcatgatcatatgcttgaagatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatca 106  Q
    |||||||||||||||||| |||| |||||| |||||| ||| |||| || |||||||||||||||       |||||||||||| ||| |||||||||||    
T  14097657 ttcatgatcatatgcttggagattctatcataaaagacttatgatggtccaagaatcttccatca-ctattcaagatatgattt-ggagaatagaaatca 14097754  T
Q  107 atcaaagaaatttttattttgagagaggtttctcatg 143  Q
    |||||||||||||| | |||  || ||||||||||||    
T  14097755 atcaaagaaattttgactttccgaaaggtttctcatg 14097791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 22064658 - 22064607
Alignment:
Q  228 ttatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    |||| ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  22064658 ttatattgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 22064607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 279
Target Start/End: Original strand, 22065295 - 22065346
Alignment:
Q  228 ttatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    |||| ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  22065295 ttatattgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 22065346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 23883500 - 23883546
Alignment:
Q  233 ttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  23883500 ttgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 23883546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 23117892 - 23117842
Alignment:
Q  228 ttatcttgttatatactaatgtattttgtgagaaatgtttc-atgagaatg 277  Q
    |||||||||||| |||||||  ||||||||||||||||||| |||||||||    
T  23117892 ttatcttgttatctactaatcaattttgtgagaaatgtttcaatgagaatg 23117842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 277
Target Start/End: Complemental strand, 19024968 - 19024920
Alignment:
Q  230 atcttgttatatactaatgtattttgtgagaaatgtttc-atgagaatg 277  Q
    |||||||||| |||||||  ||||||||||||||||||| |||||||||    
T  19024968 atcttgttatctactaatcaattttgtgagaaatgtttcaatgagaatg 19024920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 19599146 - 19599097
Alignment:
Q  228 ttatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    |||| ||||||| |||||||| |||||||||||||||  |||||||||||||    
T  19599146 ttatattgttatctactaatgaattttgtgagaaatg--tcatgagaatgtt 19599097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 7 - 279
Target Start/End: Original strand, 659 - 926
Alignment:
Q  7 ttcatgatcatatgcttgaagatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatca 106  Q
    ||||||||||||||| ||||||| |||||| || | |   |||||| || |||||||||||||||       ||||||||||| ||||||||||||||||    
T  659 ttcatgatcatatgcatgaagattctatcataataaacaaaggatggtccaagaatcttccatcatttttt-aagatatgattcgggaaaatagaaatca 757  T
Q  107 atcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatgtttttaaa 206  Q
    ||||||| ||||||||  |||||| | ||||||||||||||||  ||||||||| |||||||||||| |||||||||||||||||||| ||||||||       
T  758 atcaaaggaatttttaccttgagaaaagtttctcatgttcttaaaaagaacattctggtcatacaaagtgaagagaacatcctcactttatgttttt--- 854  T
Q  207 gataacacatatttatatgtattatcttgttatatactaatgtattttgtgagaaatgtttca-tgagaatgtt 279  Q
      ||||||||||||| || |||||||||||||| ||||||||| ||||||||| ||||||||| ||||||||||    
T  855 -ttaacacatatttacatttattatcttgttatctactaatgtgttttgtgag-aatgtttcagtgagaatgtt 926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 7 - 279
Target Start/End: Complemental strand, 35756038 - 35755767
Alignment:
Q  7 ttcatgatcatatgcttgaagatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatca 106  Q
    |||||||||||||||||  |||| |||||| |||| ||||| |||| || ||||||| || ||||       |||||||||||||| | || | ||||||    
T  35756038 ttcatgatcatatgctttgagattctatcataaaatatttatgatggtctaagaatcctctatcactattc-aagatatgatttgg-agaacataaatca 35755941  T
Q  107 atcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatgtttttaaa 206  Q
    |||||||||||||| | ||||||| ||||||||||||||| ||| || | |||||||||||||||||||||||| |||||||||| |||||||||| |||    
T  35755940 atcaaagaaattttgactttgagaaaggtttctcatgttcctacaaatatcattttggtcatacaaaatgaagaaaacatcctcatttgatgttttaaaa 35755841  T
Q  207 gataacacatat-ttatatgtattatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    ||||||| | || ||| |  |||||| ||||||| ||| | ||| |||||||||||||||||||||||||||||    
T  35755840 gataacaaaaatattacaattattattttgttatctacgagtgtgttttgtgagaaatgtttcatgagaatgtt 35755767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 99 - 276
Target Start/End: Original strand, 23550486 - 23550664
Alignment:
Q  99 agaaatcaatcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatg 198  Q
    |||||||||||||||||||||| | ||||||| ||||||||||||||| ||| || | |||||||||||||||||||||||  |||||||||| ||||||    
T  23550486 agaaatcaatcaaagaaattttaactttgagaaaggtttctcatgttcctacaaatatcattttggtcatacaaaatgaaggaaacatcctcatttgatg 23550585  T
Q  199 tttttaaagataac--acatatttatatgtattatcttgttatatactaatgtattttgtgagaaatgtttcatgagaat 276  Q
    |||| |||||||||  | ||||| | || |||||| ||||||| ||||| ||| ||||||||||||||||||||||||||    
T  23550586 ttttaaaagataacaaaaatattaagat-tattattttgttatctactagtgtgttttgtgagaaatgtttcatgagaat 23550664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 193
Target Start/End: Complemental strand, 26907858 - 26907673
Alignment:
Q  7 ttcatgatcatatgcttgaagatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatca 106  Q
    |||||||||||||||||| |||| |||||| |||||| ||| |||  || ||||||||| |||||       |||||||| ||||||| |||| ||||||    
T  26907858 ttcatgatcatatgcttggagattctatcataaaagacttatgatagtctaagaatctttcatcactattc-aagatatgttttgggagaatataaatca 26907760  T
Q  107 atcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcact 193  Q
    ||||||| |||||| | ||||||| | ||||||||||||| ||| || || ||| |||| ||||||| | ||||||||||| |||||    
T  26907759 atcaaaggaattttgactttgagaaatgtttctcatgttcctacaaaaaatattatggtgatacaaagtaaagagaacatcttcact 26907673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 282
Target Start/End: Original strand, 21632642 - 21632696
Alignment:
Q  228 ttatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgttatt 282  Q
    |||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  21632642 ttatattgttatctactaatttattttgtgagaaatgtttcatgagaatgttatt 21632696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 146
Target Start/End: Complemental strand, 5382851 - 5382714
Alignment:
Q  7 ttcatgatcatatgcttgaagatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatca 106  Q
    |||||||||||||||||| || | |||||| |||||| ||| |||| || ||||||||| |||||       |||||||||||||| | | |||||||||    
T  5382851 ttcatgatcatatgcttggaggttctatcataaaagacttatgatggtccaagaatctttcatcactattc-aagatatgatttgg-agagtagaaatca 5382754  T
Q  107 atcaaagaaatttttattttgagagaggtttctcatgttc 146  Q
    ||||||| |||| | ||||||||| |||||||||| ||||    
T  5382753 atcaaaggaattgtgattttgagaaaggtttctcacgttc 5382714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 14273212 - 14273161
Alignment:
Q  228 ttatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    |||| ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  14273212 ttatattgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 14273161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 14284618 - 14284567
Alignment:
Q  228 ttatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    |||| ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  14284618 ttatattgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 14284567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 279
Target Start/End: Original strand, 25881022 - 25881069
Alignment:
Q  232 cttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||    
T  25881022 cttgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 25881069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 199 - 279
Target Start/End: Complemental strand, 3474302 - 3474219
Alignment:
Q  199 tttttaaagataaca--catattta-tatgtattatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    |||||||||||||||  |||||||| | ||  |||| ||||||| ||| |||| ||||||||||||||||||||||||||||||    
T  3474302 tttttaaagataacaaacatatttactttgatttatattgttatctacaaatgaattttgtgagaaatgtttcatgagaatgtt 3474219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 28315070 - 28315023
Alignment:
Q  232 cttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    |||||||| || ||||| ||||||||||||||||||||||||||||||    
T  28315070 cttgttatctattaatgaattttgtgagaaatgtttcatgagaatgtt 28315023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 270
Target Start/End: Complemental strand, 16769026 - 16768984
Alignment:
Q  228 ttatcttgttatatactaatgtattttgtgagaaatgtttcat 270  Q
    |||||||||||| ||||||||| ||||||||||||||||||||    
T  16769026 ttatcttgttatctactaatgtgttttgtgagaaatgtttcat 16768984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 212
Target Start/End: Complemental strand, 15920 - 15719
Alignment:
Q  9 catgatcatatgcttgaagatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatcaat 108  Q
    |||||||||||||||| |||| |||||| |||||| ||| |||| || |||||||||||||||       ||||||| |||||| | |||||||||||||    
T  15920 catgatcatatgcttggagattctatcataaaagacttatgatggtccaagaatcttccatcactattc-aagatataatttgg-agaatagaaatcaat 15823  T
Q  109 caaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatgtttttaaaga 208  Q
    ||||| |||||| | ||||||| ||||||||||||||| ||| || | |||| |||||||||||| |||||| |||||||| | |||||||||| |||||    
T  15822 caaaggaattttgactttgagaaaggtttctcatgttcctacaaatatcattatggtcatacaaagtgaagaaaacatccttatttgatgttttaaaaga 15723  T
Q  209 taac 212  Q
    ||||    
T  15722 taac 15719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 7 - 279
Target Start/End: Original strand, 11222228 - 11222499
Alignment:
Q  7 ttcatgatcatatgcttgaagatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatca 106  Q
    ||||||||||||| |||| ||||  ||||| |||||| ||| |||  || ||||||||| |||||       |||||||||||||| | |||||||||||    
T  11222228 ttcatgatcatatacttggagattatatcataaaagacttatgatagtccaagaatcttacatcactattc-aagatatgatttgg-agaatagaaatca 11222325  T
Q  107 atcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatgtttttaaa 206  Q
    ||||||| |||||| | ||||| | ||||||||||||||| ||| || | |||| | |||||||||| |||||| | |||||||| |||||||||| |||    
T  11222326 atcaaaggaattttgactttgaaaaaggtttctcatgttcctacaaatatcattcttgtcatacaaagtgaagaaagcatcctcatttgatgttttaaaa 11222425  T
Q  207 gataacacatat-ttatatgtattatcttgttatatactaatgtattttgtgagaaatgtttca-tgagaatgtt 279  Q
    ||||||| | || ||| |  |||||| |||||||  |||||||| ||||||||| ||||||||| ||||||||||    
T  11222426 gataacaaaaatattacaattattattttgttattcactaatgtgttttgtgag-aatgtttcagtgagaatgtt 11222499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 279
Target Start/End: Complemental strand, 42733834 - 42733563
Alignment:
Q  7 ttcatgatcatatgcttgaagatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatca 106  Q
    |||||||||||||||||| ||||  ||||| |||||| ||| |||  || || |||||| |||||       |||||||||||||| | |||||||||||    
T  42733834 ttcatgatcatatgcttggagattatatcataaaagacttatgatagtccaataatcttacatcactattc-aagatatgatttgg-agaatagaaatca 42733737  T
Q  107 atcaaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcacttgatgtttttaaa 206  Q
    ||||||| |||||| | ||||| | |||||| |||| ||| ||| || | |||| | |||||||||| |||||| | ||||||||  ||||||||| |||    
T  42733736 atcaaaggaattttgactttgaaaaaggtttatcatcttcctacaaatatcattcttgtcatacaaagtgaagaaagcatcctcatatgatgttttaaaa 42733637  T
Q  207 gataacacatat-ttatatgtattatcttgttatatactaatgtattttgtgagaaatgtttca-tgagaatgtt 279  Q
    ||||||| | || ||| |  |||||| |||||||  |||||||| ||||||||| ||||||||| ||||||||||    
T  42733636 gataacaaaaatattacaattattattttgttattcactaatgtgttttgtgag-aatgtttcagtgagaatgtt 42733563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 26649391 - 26649528
Alignment:
Q  7 ttcatgatcatatgcttgaagatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatca 106  Q
    |||||||||||||| ||| |||| |||||| |||||| ||| |||| || |||||||||||||||       |||||||||||||| | |||||||||||    
T  26649391 ttcatgatcatatgtttggagattctatcataaaagacttatgatggtccaagaatcttccatcactatta-aagatatgatttgg-agaatagaaatca 26649488  T
Q  107 atcaaagaaatttttattttgagagaggtttctcatgttc 146  Q
    ||||||| |||||| | ||||||| |||||||||||||||    
T  26649489 atcaaaggaattttgactttgagaaaggtttctcatgttc 26649528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 26920976 - 26921113
Alignment:
Q  7 ttcatgatcatatgcttgaagatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatca 106  Q
    |||||||||||||| ||| |||| |||||| |||||| ||| |||| || |||||||||||||||       |||||||||||||| | |||||||||||    
T  26920976 ttcatgatcatatgtttggagattctatcataaaagacttatgatggtccaagaatcttccatcactatta-aagatatgatttgg-agaatagaaatca 26921073  T
Q  107 atcaaagaaatttttattttgagagaggtttctcatgttc 146  Q
    ||||||| |||||| | ||||||| |||||||||||||||    
T  26921074 atcaaaggaattttgactttgagaaaggtttctcatgttc 26921113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 26 - 180
Target Start/End: Original strand, 26649562 - 26649714
Alignment:
Q  26 agatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatcaatcaaagaaatttttattt 125  Q
    |||| |||||| |||||||||| |||| || |||||||||||||||       |||||||||||||| | |||||||||||||||||| |||||| | ||    
T  26649562 agattctatcataaaagatttatgatggtccaagaatcttccatcactatta-aagatatgatttgg-agaatagaaatcaatcaaaggaattttgactt 26649659  T
Q  126 tgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaaga 180  Q
    ||||| ||||||||||||||| ||| || | |||| |||| ||||||| ||||||    
T  26649660 tgagaaaggtttctcatgttcctacaaatatcattctggttatacaaagtgaaga 26649714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 26 - 180
Target Start/End: Original strand, 26921147 - 26921299
Alignment:
Q  26 agatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatcaatcaaagaaatttttattt 125  Q
    |||| |||||| |||||||||| |||| || |||||||||||||||       |||||||||||||| | |||||||||||||||||| |||||| | ||    
T  26921147 agattctatcataaaagatttatgatggtccaagaatcttccatcactatta-aagatatgatttgg-agaatagaaatcaatcaaaggaattttgactt 26921244  T
Q  126 tgagagaggtttctcatgttcttacgaagaacattttggtcatacaaaatgaaga 180  Q
    ||||| ||||||||||||||| ||| || | |||| |||| ||||||| ||||||    
T  26921245 tgagaaaggtttctcatgttcctacaaatatcattctggttatacaaagtgaaga 26921299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 279
Target Start/End: Original strand, 20034982 - 20035033
Alignment:
Q  228 ttatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    |||| ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  20034982 ttatattgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 20035033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 280
Target Start/End: Original strand, 20833428 - 20833475
Alignment:
Q  233 ttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtta 280  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||    
T  20833428 ttgttatctactaatgaattttgtgagaaatgtttcatgagaatgtta 20833475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 33956694 - 33956643
Alignment:
Q  228 ttatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    |||| ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  33956694 ttatattgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 33956643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 13816557 - 13816509
Alignment:
Q  228 ttatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatg 277  Q
    |||||||||||| |||||||| ||||||||||  ||||||||||||||||    
T  13816557 ttatcttgttatctactaatgaattttgtgag-catgtttcatgagaatg 13816509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 1694798 - 1694758
Alignment:
Q  232 cttgttatatactaatgtattttgtgagaaatgtttcatga 272  Q
    |||||||| ||||||| | ||||||||||||||||||||||    
T  1694798 cttgttatctactaatatgttttgtgagaaatgtttcatga 1694758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 5599722 - 5599762
Alignment:
Q  232 cttgttatatactaatgtattttgtgagaaatgtttcatga 272  Q
    |||||||| ||||||| | ||||||||||||||||||||||    
T  5599722 cttgttatctactaatatgttttgtgagaaatgtttcatga 5599762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 5609368 - 5609408
Alignment:
Q  232 cttgttatatactaatgtattttgtgagaaatgtttcatga 272  Q
    |||||||| ||||||| | ||||||||||||||||||||||    
T  5609368 cttgttatctactaatatgttttgtgagaaatgtttcatga 5609408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 17554823 - 17554783
Alignment:
Q  232 cttgttatatactaatgtattttgtgagaaatgtttcatga 272  Q
    |||||||| ||||||| | ||||||||||||||||||||||    
T  17554823 cttgttatctactaatatgttttgtgagaaatgtttcatga 17554783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 261
Target Start/End: Original strand, 26651734 - 26651814
Alignment:
Q  182 aacatcctcacttgatgtttttaaagataacacatat-ttatatgtattatcttgttatatactaatgtattttgtgagaa 261  Q
    |||||||||| |||||||||| |||||||||| | || ||| |  |||||| |||||||  |||||||| |||||||||||    
T  26651734 aacatcctcatttgatgttttaaaagataacaaaaatattacaattattattttgttatccactaatgtgttttgtgagaa 26651814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 261
Target Start/End: Original strand, 26923319 - 26923399
Alignment:
Q  182 aacatcctcacttgatgtttttaaagataacacatat-ttatatgtattatcttgttatatactaatgtattttgtgagaa 261  Q
    |||||||||| |||||||||| |||||||||| | || ||| |  |||||| |||||||  |||||||| |||||||||||    
T  26923319 aacatcctcatttgatgttttaaaagataacaaaaatattacaattattattttgttatccactaatgtgttttgtgagaa 26923399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 31151679 - 31151639
Alignment:
Q  232 cttgttatatactaatgtattttgtgagaaatgtttcatga 272  Q
    |||||||| ||||||| | ||||||||||||||||||||||    
T  31151679 cttgttatctactaatatgttttgtgagaaatgtttcatga 31151639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 9 - 169
Target Start/End: Original strand, 3511 - 3669
Alignment:
Q  9 catgatcatatgcttgaagatactatcacaaaagatttaggatgatcgaagaatcttccatcannnnnnnaagatatgatttgggaaaatagaaatcaat 108  Q
    |||||||||||||| |||||| |||||| |||||| ||||||||||| ||||||||| |||||       || ||||||||||||| | |||| ||||||    
T  3511 catgatcatatgctcgaagattctatcataaaagacttaggatgatcaaagaatctttcatcattactcaaa-atatgatttgggagagtagagatcaat 3609  T
Q  109 caaagaaatttttattttgagagaggtttctcatgttcttacgaagaacattttggtcata 169  Q
    |||| ||||||||| ||||||| | |||| |||||||||||| ||||||| | ||||||||    
T  3610 caaacaaattttta-tttgagaaatgtttttcatgttcttacaaagaacaatctggtcata 3669  T

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Target: scaffold0247 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 279
Target Start/End: Original strand, 23616 - 23663
Alignment:
Q  232 cttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||    
T  23616 cttgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 23663  T

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Target: scaffold0920 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0920
Description:

Target: scaffold0920; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 1816 - 1862
Alignment:
Q  233 ttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  1816 ttgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 1862  T

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Target: scaffold0773 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0773
Description:

Target: scaffold0773; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 279
Target Start/End: Original strand, 1891 - 1942
Alignment:
Q  228 ttatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    |||| ||||||| |||||||| |||||||||||||| |||||||||||||||    
T  1891 ttatattgttatctactaatgaattttgtgagaaatatttcatgagaatgtt 1942  T

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Target: scaffold0021 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 279
Target Start/End: Original strand, 176473 - 176520
Alignment:
Q  232 cttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    |||||||| ||||||| | |||||||||||||||||||||||||||||    
T  176473 cttgttatctactaatatgttttgtgagaaatgtttcatgagaatgtt 176520  T

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Target: scaffold1409 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold1409
Description:

Target: scaffold1409; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 390 - 339
Alignment:
Q  228 ttatcttgttatatactaatgtattttgtgagaaatgtttcatgagaatgtt 279  Q
    |||| ||||||| |||||||| || ||||||||||||||||| |||||||||    
T  390 ttatattgttatctactaatgaatattgtgagaaatgtttcaagagaatgtt 339  T

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Target: scaffold0281 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 23201 - 23241
Alignment:
Q  232 cttgttatatactaatgtattttgtgagaaatgtttcatga 272  Q
    |||||||| ||||||| | ||||||||||||||||||||||    
T  23201 cttgttatctactaatatgttttgtgagaaatgtttcatga 23241  T

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