View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6033_low_14 (Length: 398)
Name: NF6033_low_14
Description: NF6033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6033_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 126 - 383
Target Start/End: Complemental strand, 46031896 - 46031639
Alignment:
| Q |
126 |
cagattacgagaaacacgatcgtccatcgttgaatgatgaggtatggcgtctgaaagggatacgtaaaaatggtccacttgacaagctgttggcatcaga |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46031896 |
cagattacgagaaacacgatcgtccatcgttgaatgatgaggtatggcgtctgaaagggatacgtaaaaatggtccacttgacaagctgttggcatcaga |
46031797 |
T |
|
| Q |
226 |
tggaatacacactgttaaggattttttgagattgtacataaccaatgaagcttcattaagagaggtaagaaaatatactattgtttgaaatattatgtgt |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46031796 |
tggaatacacactgttaaggattttttgagattgtacataaccaatgaagcttcattaagagaggtaagaaaatatactattgtttgaaatattatgtgt |
46031697 |
T |
|
| Q |
326 |
ggtattatgattctttatttggttgtttgatacttttgacattaatgttgtatatgat |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46031696 |
ggtattatgattctttatttggttgtttgatacttttgacattaatgttgtatatgat |
46031639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 130 - 321
Target Start/End: Complemental strand, 46019256 - 46019065
Alignment:
| Q |
130 |
ttacgagaaacacgatcgtccatcgttgaatgatgaggtatggcgtctgaaagggatacgtaaaaatggtccacttgacaagctgttggcatcagatgga |
229 |
Q |
| |
|
||||||||| | |||||||||||| ||||||||| ||||||||||||||| ||| ||||||| | |||| |||||||||||| |||||| | |||||| |
|
|
| T |
46019256 |
ttacgagaagcgcgatcgtccatcattgaatgataaggtatggcgtctgagaggaatacgtagagatggaacacttgacaagcagttggccttggatgga |
46019157 |
T |
|
| Q |
230 |
atacacactgttaaggattttttgagattgtacataaccaatgaagcttcattaagagaggtaagaaaatatactattgtttgaaatattat |
321 |
Q |
| |
|
||||||||| |||||||||||||| ||| ||||| ||||||| |||||||||| | ||||||||||||||| |||||||||||||||| |
|
|
| T |
46019156 |
atacacactattaaggattttttgcagctgttgataactaatgaagattcattaagaaatgtaagaaaatatactgttgtttgaaatattat |
46019065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 46032027 - 46031978
Alignment:
| Q |
1 |
ctccgacaaatgttagtaattagttttaaaaaatgtatatatgtgatctc |
50 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46032027 |
ctccgacaaatgttagtaattagttttaaaaaatgtatatatgtgatctc |
46031978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University