View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6033_low_18 (Length: 346)

Name: NF6033_low_18
Description: NF6033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6033_low_18
NF6033_low_18
[»] chr3 (11 HSPs)
chr3 (14-332)||(26489695-26490011)
chr3 (260-332)||(27917194-27917266)
chr3 (285-332)||(19736813-19736860)
chr3 (285-332)||(19757715-19757762)
chr3 (262-332)||(51448297-51448367)
chr3 (262-332)||(52138452-52138522)
chr3 (262-332)||(47542299-47542369)
chr3 (260-332)||(25191001-25191073)
chr3 (260-332)||(30345153-30345225)
chr3 (260-332)||(38849716-38849788)
chr3 (285-332)||(1470685-1470732)
[»] chr5 (12 HSPs)
chr5 (262-332)||(20318615-20318685)
chr5 (260-332)||(16347990-16348062)
chr5 (260-332)||(36200404-36200476)
chr5 (262-332)||(2076062-2076132)
chr5 (260-332)||(3301471-3301543)
chr5 (260-332)||(3394332-3394404)
chr5 (261-332)||(1274888-1274959)
chr5 (285-332)||(1288177-1288224)
chr5 (262-332)||(10638921-10638991)
chr5 (262-332)||(12492975-12493045)
chr5 (285-332)||(28977445-28977492)
chr5 (262-331)||(24178148-24178217)
[»] scaffold0113 (1 HSPs)
scaffold0113 (286-332)||(12186-12232)
[»] chr8 (13 HSPs)
chr8 (262-332)||(36544776-36544846)
chr8 (262-332)||(36565829-36565899)
chr8 (260-332)||(15215858-15215930)
chr8 (268-320)||(29735447-29735499)
chr8 (285-332)||(12492430-12492477)
chr8 (260-332)||(8880022-8880094)
chr8 (260-324)||(13589062-13589126)
chr8 (260-332)||(42854592-42854664)
chr8 (288-330)||(4033084-4033126)
chr8 (296-332)||(18849703-18849739)
chr8 (285-332)||(41444892-41444939)
chr8 (282-332)||(13984679-13984729)
chr8 (283-332)||(43732232-43732281)
[»] chr7 (12 HSPs)
chr7 (262-332)||(46356439-46356509)
chr7 (260-332)||(32630229-32630301)
chr7 (285-332)||(33350394-33350441)
chr7 (262-332)||(49028891-49028961)
chr7 (262-322)||(31004848-31004908)
chr7 (264-332)||(48919014-48919082)
chr7 (261-332)||(11593583-11593654)
chr7 (285-332)||(36651641-36651688)
chr7 (285-332)||(38606652-38606699)
chr7 (262-332)||(37616540-37616610)
chr7 (262-332)||(39906967-39907037)
chr7 (296-332)||(24177783-24177819)
[»] chr4 (14 HSPs)
chr4 (262-332)||(435853-435923)
chr4 (262-332)||(23906889-23906959)
chr4 (262-332)||(48174681-48174751)
chr4 (260-332)||(47265792-47265864)
chr4 (285-332)||(33226856-33226903)
chr4 (262-332)||(31960402-31960472)
chr4 (262-332)||(56374914-56374984)
chr4 (289-332)||(10776007-10776050)
chr4 (285-332)||(30807245-30807292)
chr4 (262-332)||(1777603-1777673)
chr4 (262-332)||(53707418-53707488)
chr4 (285-322)||(27450771-27450808)
chr4 (296-332)||(50286629-50286665)
chr4 (262-332)||(48623115-48623185)
[»] chr2 (10 HSPs)
chr2 (262-332)||(2610152-2610222)
chr2 (260-332)||(13148935-13149007)
chr2 (285-332)||(11992694-11992741)
chr2 (262-332)||(4807216-4807286)
chr2 (262-332)||(8180404-8180474)
chr2 (285-332)||(38453208-38453255)
chr2 (296-332)||(452210-452246)
chr2 (285-332)||(24584194-24584241)
chr2 (285-332)||(30743270-30743317)
chr2 (260-332)||(41763637-41763709)
[»] chr1 (12 HSPs)
chr1 (262-332)||(43240969-43241039)
chr1 (262-332)||(51441352-51441422)
chr1 (262-332)||(51601682-51601752)
chr1 (260-332)||(34827690-34827762)
chr1 (262-332)||(49347981-49348052)
chr1 (262-332)||(1210369-1210439)
chr1 (262-332)||(8671544-8671614)
chr1 (296-332)||(19936179-19936215)
chr1 (285-330)||(27445545-27445590)
chr1 (284-332)||(40419327-40419375)
chr1 (260-319)||(32083346-32083405)
chr1 (285-321)||(32405083-32405119)
[»] scaffold0171 (1 HSPs)
scaffold0171 (260-332)||(5814-5886)
[»] chr6 (7 HSPs)
chr6 (260-332)||(10100445-10100517)
chr6 (260-332)||(5631439-5631511)
chr6 (288-332)||(9706426-9706470)
chr6 (287-332)||(5258738-5258783)
chr6 (260-332)||(27790778-27790850)
chr6 (285-332)||(20428224-20428271)
chr6 (296-332)||(2689314-2689350)
[»] scaffold0570 (1 HSPs)
scaffold0570 (285-332)||(2858-2905)
[»] scaffold0018 (1 HSPs)
scaffold0018 (262-331)||(31092-31161)


Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 14 - 332
Target Start/End: Original strand, 26489695 - 26490011
Alignment:
Q  14 gaagaatatactttggggaagacaaaccctctttaggaacacaaactatctttaaaatgatgtaacaagtttgcatctcgtacaatgattttcccttaaa 113  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26489695 gaagaatatgctttggggaagacaaaccctctttaggaacacaaactatctttaaaatgatgtaacaagtttgcatctcgtacaatgattttcccttaaa 26489794  T
Q  114 taaggtttgataaaagctttattcctaaatgacaaattaagcaataaaataaatacaagattaatttgaattcatcacaagacaatttgttaagtataaa 213  Q
    ||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26489795 taaggtttggtaaaagctttattcctagatgacaaattaagcaacaaaataaatacaagattaatttgaattcatcacaagacaatttgttaagtataaa 26489894  T
Q  214 atccaacactaattacaaatttgaacatatgaatcaagcataaacaaaaaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccc 313  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |    
T  26489895 atccaacactaattacaaatctaaacatatgaatcaagcataaacaaaaaggagaagtagttc--caatgaaggtgaaagtgggagatcatatcatactc 26489992  T
Q  314 caagttacatggtttaaat 332  Q
    ||||||||||| |||||||    
T  26489993 caagttacatgatttaaat 26490011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 27917194 - 27917266
Alignment:
Q  260 aaaaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||| |||||| ||  ||||||||||||| ||||||||||||||| ||||||||||| |||||||||    
T  27917194 aaaaggagaactagttctaccttgaaggtgaaagttggagatcatatcatatcccaagttacacggtttaaat 27917266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 285 - 332
Target Start/End: Original strand, 19736813 - 19736860
Alignment:
Q  285 aggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    
T  19736813 aggtgaaagttggagatcatatcataccccaagttacatggtttaaat 19736860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 285 - 332
Target Start/End: Original strand, 19757715 - 19757762
Alignment:
Q  285 aggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    
T  19757715 aggtgaaagttggagatcatatcataccccaagttacatggtttaaat 19757762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 262 - 332
Target Start/End: Complemental strand, 51448367 - 51448297
Alignment:
Q  262 aaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| || ||  || |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  51448367 aaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaat 51448297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 262 - 332
Target Start/End: Original strand, 52138452 - 52138522
Alignment:
Q  262 aaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| || ||  || |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  52138452 aaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaat 52138522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 332
Target Start/End: Complemental strand, 47542369 - 47542299
Alignment:
Q  262 aaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| || ||  || |||||||||| ||||||||| ||||||||||||||||| |||||||||    
T  47542369 aaggagaagtaggtctaccttggaggtgaaagttggagatcatttcataccccaagttacacggtttaaat 47542299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 25191001 - 25191073
Alignment:
Q  260 aaaaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| | || ||  || |||||||||| ||||||||||||||| ||||||||||| |||||||||    
T  25191001 aaaaggagaagtgggtctaccttggaggtgaaagttggagatcatatcatagcccaagttacacggtttaaat 25191073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 30345153 - 30345225
Alignment:
Q  260 aaaaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    ||||||| ||||| |||||  ||| |||||||||||| || ||||||||||||||||| |||| |||||||||    
T  30345153 aaaaggataagtaattccatgatggaggtgaaagtggaagctcatatcataccccaagctacaaggtttaaat 30345225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 38849716 - 38849788
Alignment:
Q  260 aaaaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||||| || ||  || |||||||||| ||||||||||||||||| ||| ||||| |||||||||    
T  38849716 aaaaggagaagtaggtctaccttggaggtgaaagttggagatcatatcatacctcaatttacacggtttaaat 38849788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 332
Target Start/End: Complemental strand, 1470732 - 1470685
Alignment:
Q  285 aggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||| |||||||||||||||||  ||||| ||||||||||||    
T  1470732 aggtgaaagttggagatcatatcataccaaaagttgcatggtttaaat 1470685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 262 - 332
Target Start/End: Original strand, 20318615 - 20318685
Alignment:
Q  262 aaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    ||||||||||||||| ||  || |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  20318615 aaggagaagtagttctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaat 20318685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 16348062 - 16347990
Alignment:
Q  260 aaaaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||||| || ||  || |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  16348062 aaaaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaat 16347990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 36200404 - 36200476
Alignment:
Q  260 aaaaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    ||||||||||||||||| || ||| ||||||||||||||| |||||||||||| |||||||||  ||||||||    
T  36200404 aaaaggagaagtagttctactatggaggtgaaagtgggaggtcatatcatacctcaagttacaccgtttaaat 36200476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 262 - 332
Target Start/End: Complemental strand, 2076132 - 2076062
Alignment:
Q  262 aaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    ||||||||| ||||| ||  || |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  2076132 aaggagaagcagttctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaat 2076062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 3301471 - 3301543
Alignment:
Q  260 aaaaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| | || ||  || |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  3301471 aaaaggagaagtgggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaat 3301543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 3394332 - 3394404
Alignment:
Q  260 aaaaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| | || ||  || |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  3394332 aaaaggagaagtgggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaat 3394404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 332
Target Start/End: Original strand, 1274888 - 1274959
Alignment:
Q  261 aaaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    ||||||||||||| || ||  || || ||||||| ||||||||||||||||||||||||||| |||||||||    
T  1274888 aaaggagaagtaggtctaccttggagatgaaagttggagatcatatcataccccaagttacacggtttaaat 1274959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 285 - 332
Target Start/End: Complemental strand, 1288224 - 1288177
Alignment:
Q  285 aggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  1288224 aggtgaaagttggagatcatatcataccccaagttacacggtttaaat 1288177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 332
Target Start/End: Original strand, 10638921 - 10638991
Alignment:
Q  262 aaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| || ||  || |||||||||| ||| ||||||||||||||||||||||| |||||||||    
T  10638921 aaggagaagtaggtctaccttggaggtgaaagttggaaatcatatcataccccaagttacacggtttaaat 10638991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 332
Target Start/End: Complemental strand, 12493045 - 12492975
Alignment:
Q  262 aaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| || ||  || |||| ||||| ||||||||||||||||||||||||||| |||||||||    
T  12493045 aaggagaagtagctctaccttggaggtaaaagttggagatcatatcataccccaagttacacggtttaaat 12492975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 332
Target Start/End: Complemental strand, 28977492 - 28977445
Alignment:
Q  285 aggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||| ||||||||||||||||||||||| ||| |||||||||    
T  28977492 aggtgaaagttggagatcatatcataccccaagtcacacggtttaaat 28977445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 331
Target Start/End: Original strand, 24178148 - 24178217
Alignment:
Q  262 aaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaa 331  Q
    |||||||||||| || ||  || | |||||||| |||||||||||||||||| |||||||| ||||||||    
T  24178148 aaggagaagtaggtctaccttggaagtgaaagttggagatcatatcataccctaagttacacggtttaaa 24178217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 12232 - 12186
Alignment:
Q  286 ggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  12232 ggtgaaagttggagatcatatcataccccaagttacatggtttaaat 12186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 262 - 332
Target Start/End: Original strand, 36544776 - 36544846
Alignment:
Q  262 aaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| || ||  || |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  36544776 aaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacaaggtttaaat 36544846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 262 - 332
Target Start/End: Complemental strand, 36565899 - 36565829
Alignment:
Q  262 aaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| || ||  || |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  36565899 aaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaat 36565829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 15215930 - 15215858
Alignment:
Q  260 aaaaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| | || || ||| |||||||||| |||||||||||||||||| |||||||| |||||||||    
T  15215930 aaaaggagaagtgggtctaccatggaggtgaaagttggagatcatatcatacccaaagttacacggtttaaat 15215858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 29735447 - 29735499
Alignment:
Q  268 aagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagtta 320  Q
    ||||||||| || ||| ||||||||||||||||||||||||||||||||||||    
T  29735447 aagtagttctaccatggaggtgaaagtgggagatcatatcataccccaagtta 29735499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 285 - 332
Target Start/End: Complemental strand, 12492477 - 12492430
Alignment:
Q  285 aggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  12492477 aggtgaaagttggagatcatatcataccccaagttacacggtttaaat 12492430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 8880094 - 8880022
Alignment:
Q  260 aaaaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||||| || ||  ||||||||||||| | | ||||||||||| ||||||||||| |||||||||    
T  8880094 aaaaggagaagtaggtcgaccgtgaaggtgaaagttgaaaatcatatcatatcccaagttacacggtttaaat 8880022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 260 - 324
Target Start/End: Original strand, 13589062 - 13589126
Alignment:
Q  260 aaaaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatg 324  Q
    ||||||||||||| |||||  ||| ||||||||||| |||||||||||| | |||||||||||||    
T  13589062 aaaaggagaagtatttccatgatggaggtgaaagtgagagatcatatcaaatcccaagttacatg 13589126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 42854664 - 42854592
Alignment:
Q  260 aaaaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| | || ||  || |||||||||  ||||||||||||||||||||||||||| |||||||||    
T  42854664 aaaaggagaagtgggtctaccttggaggtgaaaggtggagatcatatcataccccaagttacacggtttaaat 42854592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 330
Target Start/End: Complemental strand, 4033126 - 4033084
Alignment:
Q  288 tgaaagtgggagatcatatcataccccaagttacatggtttaa 330  Q
    ||||||| ||||||||||||||||||||||||||| |||||||    
T  4033126 tgaaagttggagatcatatcataccccaagttacacggtttaa 4033084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 18849739 - 18849703
Alignment:
Q  296 ggagatcatatcataccccaagttacatggtttaaat 332  Q
    ||||||||||||||||||||||||||| |||||||||    
T  18849739 ggagatcatatcataccccaagttacacggtttaaat 18849703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 332
Target Start/End: Complemental strand, 41444939 - 41444892
Alignment:
Q  285 aggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||  ||||||||||||||||| |||||||| ||||||||||    
T  41444939 aggtgaaaggtggagatcatatcataccacaagttacttggtttaaat 41444892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 332
Target Start/End: Original strand, 13984679 - 13984729
Alignment:
Q  282 tgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    ||||||||||||  | |||||||||||||||||||| |||| |||||||||    
T  13984679 tgaaggtgaaagaagaagatcatatcataccccaagatacacggtttaaat 13984729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 332
Target Start/End: Complemental strand, 43732281 - 43732232
Alignment:
Q  283 gaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| ||||||||||||||| | ||||| ||| |||||||||    
T  43732281 gaaggtgaaagttggagatcatatcatagcacaagtaacacggtttaaat 43732232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 262 - 332
Target Start/End: Complemental strand, 46356509 - 46356439
Alignment:
Q  262 aaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| || ||  || |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  46356509 aaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaat 46356439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 32630229 - 32630301
Alignment:
Q  260 aaaaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| | || ||  || |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  32630229 aaaaggagaagtgggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaat 32630301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 285 - 332
Target Start/End: Complemental strand, 33350441 - 33350394
Alignment:
Q  285 aggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  33350441 aggtgaaagttggagatcatatcataccccaagttacacggtttaaat 33350394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 332
Target Start/End: Original strand, 49028891 - 49028961
Alignment:
Q  262 aaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| || ||  || |||||||||| |||||||| |||||||||||||||||| |||||||||    
T  49028891 aaggagaagtaggtctaccttggaggtgaaagttggagatcagatcataccccaagttacacggtttaaat 49028961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 322
Target Start/End: Original strand, 31004848 - 31004908
Alignment:
Q  262 aaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttaca 322  Q
    |||||||||||| || ||  || |||||||||| |||||||||||||||||||||||||||    
T  31004848 aaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttaca 31004908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 264 - 332
Target Start/End: Original strand, 48919014 - 48919082
Alignment:
Q  264 ggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||| || ||| ||||||| ||||| ||||||||||| | ||||||||||||| |||||||||    
T  48919014 ggagaagtaggtctacattgaaggtaaaagtaggagatcatattacaccccaagttacacggtttaaat 48919082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 332
Target Start/End: Original strand, 11593583 - 11593654
Alignment:
Q  261 aaaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    ||||||||||||| || ||  || |||||||||| | ||||||||||||||||||||||| | |||||||||    
T  11593583 aaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcataccccaagttagacggtttaaat 11593654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 332
Target Start/End: Original strand, 36651641 - 36651688
Alignment:
Q  285 aggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||| ||||||||||||||||||||||||||  |||||||||    
T  36651641 aggtgaaagttggagatcatatcataccccaagttacgcggtttaaat 36651688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 332
Target Start/End: Original strand, 38606652 - 38606699
Alignment:
Q  285 aggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||| ||||||||||||||| ||||||||||| |||||||||    
T  38606652 aggtgaaagttggagatcatatcatatcccaagttacacggtttaaat 38606699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 332
Target Start/End: Original strand, 37616540 - 37616610
Alignment:
Q  262 aaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| || ||  || |||||||||  ||||||||||||||||||||||||||| | |||||||    
T  37616540 aaggagaagtaggtctaccttggaggtgaaaggtggagatcatatcataccccaagttacacgatttaaat 37616610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 332
Target Start/End: Complemental strand, 39907037 - 39906967
Alignment:
Q  262 aaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| || ||  || |||||||||| ||||||||||||||| |||| |||||| |||||||||    
T  39907037 aaggagaagtaggtctaccttggaggtgaaagttggagatcatatcatatcccatgttacacggtttaaat 39906967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 24177819 - 24177783
Alignment:
Q  296 ggagatcatatcataccccaagttacatggtttaaat 332  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  24177819 ggagatcatatcataccccaatttacacggtttaaat 24177783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 262 - 332
Target Start/End: Original strand, 435853 - 435923
Alignment:
Q  262 aaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| || ||  || |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  435853 aaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaat 435923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 262 - 332
Target Start/End: Complemental strand, 23906959 - 23906889
Alignment:
Q  262 aaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| || ||  || |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  23906959 aaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaat 23906889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 262 - 332
Target Start/End: Complemental strand, 48174751 - 48174681
Alignment:
Q  262 aaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| || ||  || |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  48174751 aaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaat 48174681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 47265864 - 47265792
Alignment:
Q  260 aaaaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||||| || ||  || |||||||||| |||| ||||||||||||||||||||||| ||||||||    
T  47265864 aaaaggagaagtaggtctaccttggaggtgaaagttggaggtcatatcataccccaagttacatagtttaaat 47265792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 285 - 332
Target Start/End: Original strand, 33226856 - 33226903
Alignment:
Q  285 aggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  33226856 aggtgaaagttggagatcatatcataccccaagttacacggtttaaat 33226903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 332
Target Start/End: Complemental strand, 31960472 - 31960402
Alignment:
Q  262 aaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| || ||  || |||||||||| ||||||||||||||||||||| ||||| |||||||||    
T  31960472 aaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaatttacacggtttaaat 31960402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 332
Target Start/End: Original strand, 56374914 - 56374984
Alignment:
Q  262 aaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| || ||  || |||||||||| ||||| ||||||||||||||||||||| |||||||||    
T  56374914 aaggagaagtaggtctaccttggaggtgaaagttggagagcatatcataccccaagttacacggtttaaat 56374984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 332
Target Start/End: Complemental strand, 10776050 - 10776007
Alignment:
Q  289 gaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||| ||||||||||||||||| |||||||||||||||||||    
T  10776050 gaaagttggagatcatatcataccacaagttacatggtttaaat 10776007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 332
Target Start/End: Original strand, 30807245 - 30807292
Alignment:
Q  285 aggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||| ||||||||||||||||| ||||||||| |||||||||    
T  30807245 aggtgaaagttggagatcatatcataccacaagttacacggtttaaat 30807292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 332
Target Start/End: Complemental strand, 1777673 - 1777603
Alignment:
Q  262 aaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| || ||  || |||||||||| ||| ||||||||||||||||||||||| | |||||||    
T  1777673 aaggagaagtaggtctaccttggaggtgaaagttggaaatcatatcataccccaagttacacgttttaaat 1777603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 332
Target Start/End: Original strand, 53707418 - 53707488
Alignment:
Q  262 aaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| || ||  || |||||||||| | ||||||||||||||||||||||||| ||| |||||    
T  53707418 aaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcataccccaagttacacggtctaaat 53707488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 322
Target Start/End: Complemental strand, 27450808 - 27450771
Alignment:
Q  285 aggtgaaagtgggagatcatatcataccccaagttaca 322  Q
    |||||||||| |||||||||||||||||||||||||||    
T  27450808 aggtgaaagttggagatcatatcataccccaagttaca 27450771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 50286629 - 50286665
Alignment:
Q  296 ggagatcatatcataccccaagttacatggtttaaat 332  Q
    ||||||||||||||||||||||||||| |||||||||    
T  50286629 ggagatcatatcataccccaagttacacggtttaaat 50286665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 332
Target Start/End: Complemental strand, 48623185 - 48623115
Alignment:
Q  262 aaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| || ||  || |||||||||| ||||| ||||||||||||||| ||||| | |||||||    
T  48623185 aaggagaagtaggtctaccttggaggtgaaagttggagagcatatcataccccaaattacacgatttaaat 48623115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 262 - 332
Target Start/End: Original strand, 2610152 - 2610222
Alignment:
Q  262 aaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| || ||  || |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  2610152 aaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaat 2610222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 13148935 - 13149007
Alignment:
Q  260 aaaaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||| |||||  ||  || |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  13148935 aaaaggagaaatagtttaaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaat 13149007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 285 - 332
Target Start/End: Complemental strand, 11992741 - 11992694
Alignment:
Q  285 aggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  11992741 aggtgaaagttggagatcatatcataccccaagttacacggtttaaat 11992694  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 332
Target Start/End: Original strand, 4807216 - 4807286
Alignment:
Q  262 aaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| || ||  || |||||||||| |||||||||||||||||||||||||||  ||||||||    
T  4807216 aaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacagtttaaat 4807286  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 332
Target Start/End: Original strand, 8180404 - 8180474
Alignment:
Q  262 aaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| || ||  || |||||||||| |||||||||||||||| |||||||||| |||||||||    
T  8180404 aaggagaagtaggtctaccttggaggtgaaagttggagatcatatcatactccaagttacacggtttaaat 8180474  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 332
Target Start/End: Complemental strand, 38453255 - 38453208
Alignment:
Q  285 aggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||| ||||||||||||||||||||||||||| | |||||||    
T  38453255 aggtgaaagttggagatcatatcataccccaagttacacgatttaaat 38453208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 452246 - 452210
Alignment:
Q  296 ggagatcatatcataccccaagttacatggtttaaat 332  Q
    ||||||||||||||||||||||||||| |||||||||    
T  452246 ggagatcatatcataccccaagttacacggtttaaat 452210  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 332
Target Start/End: Complemental strand, 24584241 - 24584194
Alignment:
Q  285 aggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||| ||||||||||||| ||| ||||||||| |||||||||    
T  24584241 aggtgaaagttggagatcatatcagaccgcaagttacacggtttaaat 24584194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 332
Target Start/End: Original strand, 30743270 - 30743317
Alignment:
Q  285 aggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||| |||||||||| |||| ||||||||||| |||||||||    
T  30743270 aggtgaaagttggagatcataccatatcccaagttacacggtttaaat 30743317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 41763709 - 41763637
Alignment:
Q  260 aaaaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| | || ||  || |||||||||| |||||| ||||||||||||||||| || | |||||||    
T  41763709 aaaaggagaagtgggtctaccttggaggtgaaagttggagattatatcataccccaagttgcacgatttaaat 41763637  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 262 - 332
Target Start/End: Complemental strand, 43241039 - 43240969
Alignment:
Q  262 aaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| || ||  || |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  43241039 aaggagaagtagatctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaat 43240969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 262 - 332
Target Start/End: Complemental strand, 51441422 - 51441352
Alignment:
Q  262 aaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| || ||  ||||||||||||| |||||||||||||||||||||||||||  ||||||||    
T  51441422 aaggagaagtaggtctaccttgaaggtgaaagttggagatcatatcataccccaagttacacagtttaaat 51441352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 262 - 332
Target Start/End: Original strand, 51601682 - 51601752
Alignment:
Q  262 aaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| || ||  || |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  51601682 aaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaat 51601752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 34827762 - 34827690
Alignment:
Q  260 aaaaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    ||||| |||||| || |||  ||| ||||||||||||||||||||||||||||| |||||||| |||||||||    
T  34827762 aaaagaagaagtggtcccatgatggaggtgaaagtgggagatcatatcataccctaagttacaaggtttaaat 34827690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 332
Target Start/End: Complemental strand, 49348052 - 49347981
Alignment:
Q  262 aaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttaca-tggtttaaat 332  Q
    |||||||||||| || ||  || |||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  49348052 aaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacactggtttaaat 49347981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 332
Target Start/End: Original strand, 1210369 - 1210439
Alignment:
Q  262 aaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| || ||  || |||||||||| |||||||||||||||||||||||||||  ||||||||    
T  1210369 aaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacagtttaaat 1210439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 332
Target Start/End: Original strand, 8671544 - 8671614
Alignment:
Q  262 aaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| || ||  || |||||||||| |||||||||||||||||| |||||||| |||||||||    
T  8671544 aaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccctaagttacacggtttaaat 8671614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 19936179 - 19936215
Alignment:
Q  296 ggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||||||||||||||||||||||||||||    
T  19936179 ggagatcatatcataccccaagttacatggtttaaat 19936215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 330
Target Start/End: Original strand, 27445545 - 27445590
Alignment:
Q  285 aggtgaaagtgggagatcatatcataccccaagttacatggtttaa 330  Q
    |||||||||| ||||||| ||||||||||||||||||| |||||||    
T  27445545 aggtgaaagttggagatcttatcataccccaagttacacggtttaa 27445590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 40419327 - 40419375
Alignment:
Q  284 aaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    ||||||||||| ||||||||||||||||| |||||||||  ||||||||    
T  40419327 aaggtgaaagttggagatcatatcataccacaagttacacagtttaaat 40419375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 319
Target Start/End: Complemental strand, 32083405 - 32083346
Alignment:
Q  260 aaaaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagtt 319  Q
    |||||||||||| | || ||  || |||||||||| ||||||||||||||||||||||||    
T  32083405 aaaaggagaagtgggtctaccttggaggtgaaagttggagatcatatcataccccaagtt 32083346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 321
Target Start/End: Complemental strand, 32405119 - 32405083
Alignment:
Q  285 aggtgaaagtgggagatcatatcataccccaagttac 321  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  32405119 aggttaaagttggagatcatatcataccccaagttac 32405083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 5814 - 5886
Alignment:
Q  260 aaaaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    ||||||||||||||||  |   || |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  5814 aaaaggagaagtagttatatcttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaat 5886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 10100517 - 10100445
Alignment:
Q  260 aaaaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||| ||||||||| || ||  || |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  10100517 aaaatgagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaat 10100445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 5631439 - 5631511
Alignment:
Q  260 aaaaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||| | || ||  || ||||||||||  |||||||||||||||||||||||||| |||||||||    
T  5631439 aaaaggagaagtgggtctaccttgcaggtgaaagttagagatcatatcataccccaagttacacggtttaaat 5631511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 9706426 - 9706470
Alignment:
Q  288 tgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||    
T  9706426 tgaaagttggagatcatatcataccccaagttacacggtttaaat 9706470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 332
Target Start/End: Complemental strand, 5258783 - 5258738
Alignment:
Q  287 gtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||| |||||||||||||||||||||||||||  ||||||||    
T  5258783 gtgaaagttggagatcatatcataccccaagttacacagtttaaat 5258738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 27790778 - 27790850
Alignment:
Q  260 aaaaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    ||||||| ||||||||| || ||| ||||||| ||||||| |||||  |||| |||| |||||||||||||||    
T  27790778 aaaaggataagtagttctaccatggaggtgaaggtgggaggtcataaaatactccaaattacatggtttaaat 27790850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 332
Target Start/End: Complemental strand, 20428271 - 20428224
Alignment:
Q  285 aggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||| ||||||||||||||||| ||||||||  |||||||||    
T  20428271 aggtgaaagttggagatcatatcataccacaagttacgcggtttaaat 20428224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 2689314 - 2689350
Alignment:
Q  296 ggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||||||||||| |||||||| |||||||||    
T  2689314 ggagatcatatcataccctaagttacacggtttaaat 2689350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 285 - 332
Target Start/End: Complemental strand, 2905 - 2858
Alignment:
Q  285 aggtgaaagtgggagatcatatcataccccaagttacatggtttaaat 332  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  2905 aggtgaaagttggagatcatatcataccccaagttacacggtttaaat 2858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 331
Target Start/End: Original strand, 31092 - 31161
Alignment:
Q  262 aaggagaagtagttccacaatgaaggtgaaagtgggagatcatatcataccccaagttacatggtttaaa 331  Q
    |||||||||||| || ||  || | |||||||| ||||||||||||||||||||||||||| ||||||||    
T  31092 aaggagaagtaggtctaccttggaagtgaaagttggagatcatatcataccccaagttacacggtttaaa 31161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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