View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6033_low_19 (Length: 333)
Name: NF6033_low_19
Description: NF6033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6033_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 4 - 273
Target Start/End: Complemental strand, 581549 - 581268
Alignment:
| Q |
4 |
tctccaagaacttacaattatccaaaaaatatttagctaaagataactcaagatcctccccaataacttcttcaaatttcacaacatggagaaaagccaa |
103 |
Q |
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| T |
581549 |
tctccaagaacttacaattatccaaaaaatatttagctaaagataactcaagatcctccccaataacttgttcaaatttcacaacatggagaaaagccaa |
581450 |
T |
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| Q |
104 |
acgcttgggcacatcagcagaactcaaaagctcttccccaaaatcacatatttcctaaccattaataataaaaagaaataccaaataagactcttacaaa |
203 |
Q |
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| T |
581449 |
acgcttgggcacatcagcagaactcaaaagctcttccccaaaatcacatatttcctaaccattaataat-aaaagaaataccaaataagactcttacaaa |
581351 |
T |
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| Q |
204 |
gcaaacaaattaccagtaagaagccacaaac-------------gacttttatacgatatgaagcttgtattatgaatataat |
273 |
Q |
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| T |
581350 |
gcaaacaaattaccagtaagaagtcacaaacaggaccttactaagacttttatacgaaatgaagcttgtattatgaatataat |
581268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 266 - 333
Target Start/End: Complemental strand, 581218 - 581151
Alignment:
| Q |
266 |
aatataattaattacgaaccttgagaacaagtgtctcgagaaccggtgccttttgaagcaaggttaag |
333 |
Q |
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| T |
581218 |
aatataagtaattacgaaccttgagaacaagtgtctcgagaaccggtgccttttgaagcaaggttaag |
581151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 145
Target Start/End: Complemental strand, 1207909 - 1207768
Alignment:
| Q |
4 |
tctccaagaacttacaattatccaaaaaatatttagctaaagataactcaagatcctccccaataacttcttcaaatttcacaacatggagaaaagccaa |
103 |
Q |
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| T |
1207909 |
tctccaagaccataccattttccaccaaaaattgagctaaaattaactcatgatcatctccattaacttcttcaaatttcacaacatggagagaagccaa |
1207810 |
T |
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| Q |
104 |
acgcttgggcacatcagcagaactcaaaagctcttccccaaa |
145 |
Q |
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|| | ||| ||| ||| |||| |||||||||||||| |||| |
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| T |
1207809 |
acattcgggaacaacagaagaattcaaaagctcttcctcaaa |
1207768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 215
Target Start/End: Complemental strand, 1215140 - 1214960
Alignment:
| Q |
34 |
atttagctaaagataactcaagatcctccccaataacttcttcaaatttcacaacatggagaaaagccaaacgcttgggcacatcagcagaactcaaaag |
133 |
Q |
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||||||||||| ||| |||| ||| || ||| ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||||||| |
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| T |
1215140 |
atttagctaaaaatatctcatgattgtctccattaacttcttcaaatttcacaacatggagagaagccaaactaccgggcaccacggcagaactcaaaag |
1215041 |
T |
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| Q |
134 |
ctcttccccaaaatcacatatttcctaaccattaataataaaaagaaataccaaataagactcttacaaagcaaacaaatta |
215 |
Q |
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|||||| |||| | | |||| ||| || |||||| || |||| ||| |||||||||||||| | |||| ||| |||||| |
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| T |
1215040 |
ttcttcctcaaatttaggtattccctgacaattaatcatcaaaa-aaagtccaaataagactctaaaaaagtaaagaaatta |
1214960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 140
Target Start/End: Complemental strand, 1201712 - 1201639
Alignment:
| Q |
67 |
taacttcttcaaatttcacaacatggagaaaagccaaacgcttgggcacatcagcagaactcaaaagctcttcc |
140 |
Q |
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||||||||| ||||||||||||||||||| ||||||||| | ||||||| |||||||||| | | |||||||| |
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| T |
1201712 |
taacttctttaaatttcacaacatggagagaagccaaacattcgggcacaacagcagaacttagacgctcttcc |
1201639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 127
Target Start/End: Original strand, 929202 - 929300
Alignment:
| Q |
29 |
aaaatatttagctaaagataactcaagatcctccccaataacttcttcaaatttcacaacatggagaaaagccaaacgcttgggcacatcagcagaact |
127 |
Q |
| |
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|||| ||||||| ||| ||| ||| |||| || ||||||||||||| |||||||||||||| |||| ||||||||| | ||||||| |||| ||||| |
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| T |
929202 |
aaaaaatttagccaaaaatagatcatgatcgtctccaataacttctttaaatttcacaacatagagagaagccaaacattcgggcacaacagccgaact |
929300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 320
Target Start/End: Complemental strand, 1201469 - 1201423
Alignment:
| Q |
274 |
taattacgaaccttgagaacaagtgtctcgagaaccggtgccttttg |
320 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||| |||||| |
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| T |
1201469 |
taattacgaaccttgagaactagtgtcttgagaaccggtgtcttttg |
1201423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 1214906 - 1214868
Alignment:
| Q |
235 |
gacttttatacgatatgaagcttgtattatgaatataat |
273 |
Q |
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|||||||||| |||||||||||||||| ||||||||||| |
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| T |
1214906 |
gacttttatatgatatgaagcttgtatcatgaatataat |
1214868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 145
Target Start/End: Original strand, 8188450 - 8188591
Alignment:
| Q |
4 |
tctccaagaacttacaattatccaaaaaatatttagctaaagataactcaagatcctccccaataacttcttcaaatttcacaacatggagaaaagccaa |
103 |
Q |
| |
|
||||||||| | ||| ||| |||| |||| || |||||||| |||||||| |||| || | | ||| ||||||||||||||||||||||||| ||||||| |
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| T |
8188450 |
tctccaagatcataccattttccataaaaaatgtagctaaaaataactcatgatcgtctctattaatttcttcaaatttcacaacatggagagaagccaa |
8188549 |
T |
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| Q |
104 |
acgcttgggcacatcagcagaactcaaaagctcttccccaaa |
145 |
Q |
| |
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|| | ||||||| |||||||||||| |||||||||| |||| |
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| T |
8188550 |
acaatcgggcacaacagcagaactcagaagctcttccacaaa |
8188591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 328
Target Start/End: Original strand, 8188730 - 8188784
Alignment:
| Q |
274 |
taattacgaaccttgagaacaagtgtctcgagaaccggtgccttttgaagcaagg |
328 |
Q |
| |
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||||||| |||||| ||||| ||||||| ||||||||| | |||||||||||||| |
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| T |
8188730 |
taattaccaaccttaagaactagtgtcttgagaaccggcgtcttttgaagcaagg |
8188784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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