View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6033_low_2 (Length: 673)

Name: NF6033_low_2
Description: NF6033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6033_low_2
NF6033_low_2
[»] chr4 (1 HSPs)
chr4 (19-654)||(43396004-43396639)


Alignment Details
Target: chr4 (Bit Score: 592; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 19 - 654
Target Start/End: Original strand, 43396004 - 43396639
Alignment:
Q  19 cctgcacctcagccgcagggaatccaagctcctaattataactccagaagaactttcaagccttctgcactgtctgaaccgttgccggagaatacaagcc 118  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43396004 cctgcacctcagccacagggaatccaagctcctaattataactccagaagaactttcaagccttctgcactgtctgaaccgttgccggagaatacaagcc 43396103  T
Q  119 ggagaacaccacatagtgaggattctttacctctgtcaccgccgaggaacctcgtggaatctgctcaccggagaacgatatcttcttccacgtgttcgtg 218  Q
    || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43396104 ggcgaacaccacatagtgaggattctttacctctgtcaccaccgaggaacctcgtggaatctgctcaccggagaacgatatcttcttccacgtgttcgtg 43396203  T
Q  219 ggagaagatagctccggtgaagaattttgtgaaggaagaagaagaaaatacggaggagtatagtcttaatgggtttttgaaagagcagaggaattagttt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43396204 ggagaagatagctccggtgaagaattttgtgaaggaagaagaagaaactacggaggagtatagtcttaatgggtttttgaaagagcagaggaatttgttt 43396303  T
Q  319 cagagattctcgaagggagagctgcatacaaatgtcgaaataaaaattgtgctttctgggcatttaaacagttagtgaaaaacttgaatgcatgttttct 418  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43396304 cagagattctcgaagggagagcttcatacaaatgtcgaaatcaaaattgtgctttctgggcatttaaacagttagtgaaaaacttgaatgcatgttttct 43396403  T
Q  419 atcatgctaaatttgtcggaatcactgtgagcattataattttcaaaagctacggtagctcgctgtgattttgataaactcacgtgagaccaagcatgga 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  43396404 atcatgctaaatttgtcggaatcactgtgagcattataattttcaaaagctacggtagctcactgtgattttgataaactcacgtgagaccaaacatgga 43396503  T
Q  519 ctgaatttgttttgttgatttgattttgggagtgttggaaagtgtggaatttatttgtatgtggtgcaggtacggcatcgatggtggctgctatttgtca 618  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  43396504 ctgaatttgttttgttgatttgattttgggagtgttggaaagtgtggaatttatttgtatgtggtgcaggtacggcgtcgatggtggctgctatttgcca 43396603  T
Q  619 tgcatggctattgggttatagacagaaagagaatga 654  Q
    ||||||||||||||||||||||||||||||||||||    
T  43396604 tgcatggctattgggttatagacagaaagagaatga 43396639  T

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