View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6033_low_21 (Length: 317)
Name: NF6033_low_21
Description: NF6033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6033_low_21 |
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| [»] scaffold0552 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 6186145 - 6185900
Alignment:
| Q |
1 |
agttccatacgatttctcaaaattcatgtacatctcaaataagtcatnnnnnnntgctacacgagattaactttgtccataactagtgtgttttccaagg |
100 |
Q |
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| T |
6186145 |
agttccataccatttctcaaaattcatgtacatctcaaataagtcataaaaaaatgctacacgagattaactttgtccataactagtgtgttttccaagg |
6186046 |
T |
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| Q |
101 |
caaacactgtatgttagagcaagaatctgtccatgtttctttgcaggcaccttcgattccatcatcacaacacttgcaaacaaccccaagcgtcgcaaaa |
200 |
Q |
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| T |
6186045 |
caaacactgtatgttagagcaagaatctgtccatgtttctttgcaggcaccttcgattccatcatcacaacacttgcaaacaaccccaagcgtcgcaaaa |
6185946 |
T |
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| Q |
201 |
atctttgagtaccctgcaattgaatcacacacaacaatcaacaacc |
246 |
Q |
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| T |
6185945 |
atctttgagtaccctgcaattgaatcacacacaacaatcaacaacc |
6185900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 6763871 - 6763814
Alignment:
| Q |
164 |
atcacaacacttgcaaacaaccccaagcgtcgcaaaaatctttgagtaccctgcaatt |
221 |
Q |
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| T |
6763871 |
atcacaacatttgcaaacaactccaagtgttgcaaaaatcttcgagtaccttgcaatt |
6763814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 10181797 - 10181855
Alignment:
| Q |
163 |
catcacaacacttgcaaacaaccccaagcgtcgcaaaaatctttgagtaccctgcaatt |
221 |
Q |
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| T |
10181797 |
catcacaacatttgcaaacaaatccaagttttgcaaaaatctttgagttccctgcaatt |
10181855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 302
Target Start/End: Complemental strand, 6185874 - 6185846
Alignment:
| Q |
274 |
acatcaaaaggtacaagaacgaaatatct |
302 |
Q |
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| T |
6185874 |
acatcaaaaggtacaagaacgaaatatct |
6185846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0552 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0552
Description:
Target: scaffold0552; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 2133 - 2190
Alignment:
| Q |
164 |
atcacaacacttgcaaacaaccccaagcgtcgcaaaaatctttgagtaccctgcaatt |
221 |
Q |
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| T |
2133 |
atcacaacatttgcaaacaactccaagtgttgcaaaaatcttcgagtaccttgcaatt |
2190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 23733585 - 23733532
Alignment:
| Q |
163 |
catcacaacacttgcaaacaaccccaagcgtcgcaaaaatctttgagtaccctg |
216 |
Q |
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| T |
23733585 |
catcacaacatttgcaaacaactccaagtgttggaaaaatctttgagtaccctg |
23733532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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