View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6033_low_25 (Length: 291)
Name: NF6033_low_25
Description: NF6033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6033_low_25 |
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| [»] scaffold0042 (1 HSPs) |
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| [»] scaffold0502 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 274
Target Start/End: Complemental strand, 47282404 - 47282140
Alignment:
| Q |
11 |
taatactgtctgagtcacaactttaaggacaaaa-tggtgattaagtcaaaactgtggcgaggcctgcaaaacattaaggatgaagaattaacatgattg |
109 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47282404 |
taatactgtctgagtcacaactttaaggacaaaaatggtgattaagtcaaaagtgtggcgaggcctgcaaaacattaaggatgaagaattaacatgattg |
47282305 |
T |
|
| Q |
110 |
gacctgtatgagcagaataggatgatcaatgatttgtttcgtgcttggaacatcatatatgagttcttggaaacaagggaatgggggatgaagagcatca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
47282304 |
gacctgtatgagcagaataggatgatcaatgatttgtttcgtgcttggaacatcatatatgagttcttggaagcaagggaatgggggatgaagagcatca |
47282205 |
T |
|
| Q |
210 |
ccaaattcattaagtgttacatcagcttcagcttcaatgaacatgacaccttcaccaccagtaca |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47282204 |
ccaaattcattaagtgttacatcagcttcagcttcaatgaacatgacaccttcaccaccagtaca |
47282140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 70 - 265
Target Start/End: Complemental strand, 47275604 - 47275408
Alignment:
| Q |
70 |
aggcctgcaaaacattaaggatgaa-gaattaacatgattggacctgtatgagcagaataggatgatcaatgatttgtttcgtgcttggaacatcatata |
168 |
Q |
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|||||||||||||||||||| |||| |||||||||| ||||||||||||| |||||||| ||||||||||| ||||| || |||| ||||||||| |||| |
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| T |
47275604 |
aggcctgcaaaacattaaggttgaaagaattaacataattggacctgtataagcagaatgggatgatcaataatttggtttgtgcctggaacatcgtata |
47275505 |
T |
|
| Q |
169 |
tgagttcttggaaacaagggaatgggggatgaagagcatcaccaaattcattaagtgttacatcagcttcagcttcaatgaacatgacaccttcacc |
265 |
Q |
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| T |
47275504 |
tgagttcttggaagcaagggaatgggggatgcagtgcatcaccaaattcatcaagtgtaacatcagtttcagcttcaatgaacatgactccctcacc |
47275408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 155 - 266
Target Start/End: Complemental strand, 47240954 - 47240843
Alignment:
| Q |
155 |
tggaacatcatatatgagttcttggaaacaagggaatgggggatgaagagcatcaccaaattcattaagtgttacatcagcttcagcttcaatgaacatg |
254 |
Q |
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||||||||| |||| ||||| |||||| ||||||||||| ||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
47240954 |
tggaacatcgtataagagttgttggaagcaagggaatggaggatgcagagcatcaccaaattgatcaagtgttacatcagcttcagcttcaatgaacatg |
47240855 |
T |
|
| Q |
255 |
acaccttcacca |
266 |
Q |
| |
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|||||||||||| |
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|
| T |
47240854 |
acaccttcacca |
47240843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 155 - 266
Target Start/End: Original strand, 47296239 - 47296350
Alignment:
| Q |
155 |
tggaacatcatatatgagttcttggaaacaagggaatgggggatgaagagcatcaccaaattcattaagtgttacatcagcttcagcttcaatgaacatg |
254 |
Q |
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|
|||||||||||||| ||||| |||||| ||||||||||| ||||| || ||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
47296239 |
tggaacatcatataggagttgttggaagcaagggaatggaggatgcagggcatcaccaaattgatcaagtgttacatcagcttcagcttcaatgaacatg |
47296338 |
T |
|
| Q |
255 |
acaccttcacca |
266 |
Q |
| |
|
|||||||||||| |
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|
| T |
47296339 |
acaccttcacca |
47296350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 96 - 259
Target Start/End: Original strand, 47300772 - 47300935
Alignment:
| Q |
96 |
aattaacatgattggacctgtatgagcagaataggatgatcaatgatttgtttcgtgcttggaacatcatatatgagttcttggaaacaagggaatgggg |
195 |
Q |
| |
|
|||||| || |||| ||||||||||| |||| ||| | || || ||||||| || || | |||||||||||| ||||| ||||| ||||||||||| | |
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| T |
47300772 |
aattaatataattgaacctgtatgagtcgaatgggacggtccataatttgttccgagcctcgaacatcatataggagttgatggaagcaagggaatggag |
47300871 |
T |
|
| Q |
196 |
gatgaagagcatcaccaaattcattaagtgttacatcagcttcagcttcaatgaacatgacacc |
259 |
Q |
| |
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|||| || ||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47300872 |
gatgcagggcatcaccaaattgatcaagtgttacatcagcttcagcttcaatgaacatgacacc |
47300935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 155 - 259
Target Start/End: Complemental strand, 47255906 - 47255802
Alignment:
| Q |
155 |
tggaacatcatatatgagttcttggaaacaagggaatgggggatgaagagcatcaccaaattcattaagtgttacatcagcttcagcttcaatgaacatg |
254 |
Q |
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|
|||||||||| ||| | ||||||||| ||||| ||||| || || |||||||||||||||| || |||||||| ||||||||||||||||||||||||| |
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| T |
47255906 |
tggaacatcacatagaatttcttggaagcaaggaaatggaggttgcagagcatcaccaaattgatcaagtgttatatcagcttcagcttcaatgaacatg |
47255807 |
T |
|
| Q |
255 |
acacc |
259 |
Q |
| |
|
||||| |
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|
| T |
47255806 |
acacc |
47255802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 253
Target Start/End: Complemental strand, 47264994 - 47264852
Alignment:
| Q |
111 |
acctgtatgagcagaataggatgatcaatgatttgtttcgtgcttggaacatcatatatgagttcttggaaacaagggaatgggggatgaagagcatcac |
210 |
Q |
| |
|
||||||||||| |||| ||| | ||||| ||| ||| || | ||||||||| |||| ||||||| ||| || |||| ||||||||| | ||| |||| |
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| T |
47264994 |
acctgtatgagtcgaatgggacggtcaataattagttccgatcctggaacatcgtatagaagttcttcgaagcatgggagtgggggatgcaaagcgtcac |
47264895 |
T |
|
| Q |
211 |
caaattcattaagtgttacatcagcttcagcttcaatgaacat |
253 |
Q |
| |
|
| ||||||| ||| |||||||||||||||||||||| |||||| |
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|
| T |
47264894 |
cgaattcatcaagggttacatcagcttcagcttcaacgaacat |
47264852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 106 - 266
Target Start/End: Complemental strand, 32729668 - 32729508
Alignment:
| Q |
106 |
attggacctgtatgagcagaataggatgatcaatgatttgtttcgtgcttggaacatcatatatgagttcttggaaacaagggaatgggggatgaagagc |
205 |
Q |
| |
|
|||||||||||||||| |||| ||| | ||||| || |||| | || ||||||||| |||| ||||| |||||| ||||||||||| ||||| ||||| |
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|
| T |
32729668 |
attggacctgtatgagtcgaatgggacggtcaataatatgttctgagcctggaacatcgtataagagttgttggaagcaagggaatggaggatgcagagc |
32729569 |
T |
|
| Q |
206 |
atcaccaaattcattaagtgttacatcagcttcagcttcaatgaacatgacaccttcacca |
266 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||||| |||||| |||||| |
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|
| T |
32729568 |
atcaccaaattgatcaagtgttacatcagcttcagcttcaatgaacacgacaccctcacca |
32729508 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 20511925 - 20511845
Alignment:
| Q |
186 |
gggaatgggggatgaagagcatcaccaaattcattaagtgttacatcagcttcagcttcaatgaacatgacaccttcacca |
266 |
Q |
| |
|
|||||||||||||| | | | |||||||| |||| ||||||||||| ||||||||||||||||||||||||||| |||||| |
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|
| T |
20511925 |
gggaatgggggatgcaaaccgtcaccaaagtcatcaagtgttacattagcttcagcttcaatgaacatgacaccctcacca |
20511845 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 262
Target Start/End: Original strand, 14880039 - 14880118
Alignment:
| Q |
183 |
caagggaatgggggatgaagagcatcaccaaattcattaagtgttacatcagcttcagcttcaatgaacatgacaccttc |
262 |
Q |
| |
|
||||| ||||| |||||||||||||||||||| || ||||| || ||||| || ||||||||||| |||| |||||||| |
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|
| T |
14880039 |
caaggaaatggaggatgaagagcatcaccaaactctttaagagtaacatctgcatcagcttcaataaacaaaacaccttc |
14880118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 262
Target Start/End: Original strand, 91715 - 91788
Alignment:
| Q |
189 |
aatgggggatgaagagcatcaccaaattcattaagtgttacatcagcttcagcttcaatgaacatgacaccttc |
262 |
Q |
| |
|
||||| |||||||| ||||||||||||| ||||| || |||||||| ||||||||||| |||| |||||||| |
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|
| T |
91715 |
aatggaggatgaagtgcatcaccaaattgtttaagagtaacatcagcatcagcttcaataaacaaaacaccttc |
91788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0502 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0502
Description:
Target: scaffold0502; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 263
Target Start/End: Original strand, 11534 - 11576
Alignment:
| Q |
221 |
aagtgttacatcagcttcagcttcaatgaacatgacaccttca |
263 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||| ||||||| |
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|
| T |
11534 |
aagtgttacatctgcatcagcttcaatgaacatgataccttca |
11576 |
T |
|
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